Wall clock time and date at job start Tue Mar 31 2020 13:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30623 * 1 3 3 Si 1.86800 * 120.00054 * 2 1 4 4 H 1.48495 * 109.46992 * 269.99556 * 3 2 1 5 5 H 1.48500 * 109.47000 * 30.00240 * 3 2 1 6 6 H 1.48501 * 109.47101 * 149.99944 * 3 2 1 7 7 C 1.40275 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00246 * 171.68175 * 7 2 1 9 9 C 1.40892 * 119.99844 * 351.69083 * 7 2 1 10 10 C 1.40705 * 120.32855 * 329.26989 * 9 7 2 11 11 C 1.37590 * 119.88367 * 179.97438 * 10 9 7 12 12 C 1.38830 * 120.56986 * 359.97438 * 11 10 9 13 13 C 1.38214 * 120.67616 * 0.02576 * 12 11 10 14 14 C 1.39230 * 120.09294 * 359.97438 * 13 12 11 15 15 C 1.47432 * 120.28144 * 179.97438 * 14 13 12 16 16 O 1.21610 * 119.99573 * 133.33412 * 15 14 13 17 17 N 1.34773 * 120.00240 * 313.33590 * 15 14 13 18 18 C 1.47027 * 125.64834 * 4.62008 * 17 15 14 19 19 C 1.54306 * 107.27475 * 180.97135 * 18 17 15 20 20 C 1.55153 * 102.86761 * 22.52463 * 19 18 17 21 21 H 1.08999 * 111.00611 * 82.37746 * 20 19 18 22 22 C 1.50706 * 111.03773 * 206.21608 * 20 19 18 23 23 C 1.38225 * 119.61598 * 78.40142 * 22 20 19 24 24 C 1.38636 * 119.15957 * 179.75445 * 23 22 20 25 25 C 1.38668 * 118.41747 * 0.50192 * 24 23 22 26 26 C 1.38190 * 119.16576 * 359.73451 * 25 24 23 27 27 N 1.31852 * 119.61776 * 258.66841 * 22 20 19 28 28 C 1.47417 * 125.65028 * 184.92920 * 17 15 14 29 29 H 0.97000 * 120.00076 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.05582 * 359.95940 * 10 9 7 31 31 H 1.08007 * 119.71848 * 180.02562 * 11 10 9 32 32 H 1.08005 * 119.65669 * 179.74432 * 12 11 10 33 33 H 1.07998 * 119.95359 * 179.97438 * 13 12 11 34 34 H 1.09000 * 109.88107 * 300.51764 * 18 17 15 35 35 H 1.08996 * 109.88168 * 61.67917 * 18 17 15 36 36 H 1.09005 * 110.92523 * 264.10869 * 19 18 17 37 37 H 1.09003 * 110.74780 * 140.85639 * 19 18 17 38 38 H 1.08001 * 120.42380 * 359.97231 * 23 22 20 39 39 H 1.07997 * 120.78945 * 180.21384 * 24 23 22 40 40 H 1.08002 * 120.42088 * 179.75285 * 25 24 23 41 41 H 1.07999 * 119.61781 * 179.97438 * 26 25 24 42 42 H 1.09003 * 110.37199 * 274.67317 * 28 17 15 43 43 H 1.09004 * 110.36892 * 36.99627 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.4878 2.0463 -1.4000 5 1 1.4377 2.6526 0.7001 6 1 3.5378 1.4401 0.7001 7 6 2.0076 -1.2148 0.0005 8 1 3.0791 -1.2198 -0.1348 9 6 1.3142 -2.4285 0.1774 10 6 0.1429 -2.4706 0.9559 11 6 -0.5273 -3.6607 1.1221 12 6 -0.0584 -4.8242 0.5272 13 6 1.0897 -4.8095 -0.2422 14 6 1.7898 -3.6206 -0.4288 15 6 3.0153 -3.6003 -1.2483 16 8 3.1713 -2.7339 -2.0873 17 7 3.9625 -4.5418 -1.0675 18 6 3.8621 -5.6955 -0.1616 19 6 5.1872 -6.4788 -0.2687 20 6 6.1799 -5.4085 -0.7944 21 1 6.5581 -4.7923 0.0212 22 6 7.3130 -6.0484 -1.5545 23 6 7.1106 -6.4709 -2.8550 24 6 8.1610 -7.0537 -3.5471 25 6 9.3780 -7.1999 -2.8988 26 6 9.5042 -6.7580 -1.5956 27 7 8.4844 -6.2037 -0.9695 28 6 5.2735 -4.5819 -1.7405 29 1 -0.4850 0.8400 0.0004 30 1 -0.2293 -1.5704 1.4223 31 1 -1.4264 -3.6900 1.7199 32 1 -0.5938 -5.7511 0.6709 33 1 1.4443 -5.7215 -0.6992 34 1 3.7145 -5.3513 0.8620 35 1 3.0314 -6.3330 -0.4640 36 1 5.0967 -7.3020 -0.9775 37 1 5.4987 -6.8464 0.7091 38 1 6.1474 -6.3453 -3.3272 39 1 8.0330 -7.3900 -4.5654 40 1 10.2169 -7.6532 -3.4061 41 1 10.4487 -6.8687 -1.0836 42 1 5.1878 -5.0740 -2.7094 43 1 5.6697 -3.5735 -1.8600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868031893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:40 Heat of formation + Delta-G solvation = 8.888185 kcal Electronic energy + Delta-G solvation = -26207.471246 eV Core-core repulsion = 22602.363904 eV Total energy + Delta-G solvation = -3605.107342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.60439 -40.74530 -39.02684 -38.03171 -35.63351 -34.06925 -33.35072 -31.92865 -31.48262 -31.09189 -29.34620 -27.40158 -25.72469 -24.45345 -23.92874 -22.93858 -22.77401 -21.48199 -20.42538 -19.13693 -18.20128 -18.07562 -17.37049 -17.21988 -16.62485 -16.48977 -16.16704 -16.00909 -15.45770 -15.02703 -14.75738 -14.65949 -14.53250 -14.32523 -14.21585 -13.89497 -13.80223 -13.50453 -13.28280 -13.02324 -12.91785 -12.80157 -12.65991 -12.41581 -12.24355 -12.18993 -11.85774 -11.73292 -11.43680 -11.16769 -10.79967 -10.58086 -10.36837 -9.87228 -9.62471 -9.35103 -9.29323 -8.67475 -6.42044 0.15561 0.37971 0.62987 1.01383 1.29994 1.42856 1.47120 1.96051 2.16756 2.22996 2.72458 2.80331 3.21534 3.48434 3.60477 3.66366 3.91638 3.99850 4.09825 4.13863 4.17004 4.28845 4.31409 4.38376 4.43775 4.61053 4.63180 4.71049 4.81775 4.85343 4.86376 4.92204 5.01507 5.07818 5.11802 5.23188 5.29768 5.31094 5.34491 5.48797 5.60223 5.80317 5.85547 6.01228 6.10725 6.28656 6.53616 6.67600 6.85943 6.93694 7.06316 7.43405 8.27857 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.003343 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.359703 B = 8372.858654 C = 9561.067932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.035 3.965 3 Si 0.977 3.023 4 H -0.272 1.272 5 H -0.252 1.252 6 H -0.263 1.263 7 C -0.468 4.468 8 H 0.054 0.946 9 C 0.114 3.886 10 C -0.179 4.179 11 C -0.094 4.094 12 C -0.231 4.231 13 C -0.059 4.059 14 C -0.265 4.265 15 C 0.590 3.410 16 O -0.586 6.586 17 N -0.624 5.624 18 C 0.101 3.899 19 C -0.102 4.102 20 C -0.045 4.045 21 H 0.088 0.912 22 C 0.130 3.870 23 C -0.179 4.179 24 C -0.073 4.073 25 C -0.172 4.172 26 C 0.088 3.912 27 N -0.512 5.512 28 C 0.113 3.887 29 H 0.290 0.710 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.143 0.857 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.178 0.822 42 H 0.083 0.917 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.849 -16.094 -2.533 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.175 1.175 6 H -0.187 1.187 7 C -0.498 4.498 8 H 0.073 0.927 9 C 0.111 3.889 10 C -0.199 4.199 11 C -0.112 4.112 12 C -0.250 4.250 13 C -0.078 4.078 14 C -0.270 4.270 15 C 0.383 3.617 16 O -0.466 6.466 17 N -0.358 5.358 18 C -0.021 4.021 19 C -0.140 4.140 20 C -0.065 4.065 21 H 0.106 0.894 22 C -0.007 4.007 23 C -0.199 4.199 24 C -0.099 4.099 25 C -0.192 4.192 26 C -0.069 4.069 27 N -0.222 5.222 28 C -0.010 4.010 29 H 0.101 0.899 30 H 0.125 0.875 31 H 0.138 0.862 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.160 0.840 39 H 0.180 0.820 40 H 0.184 0.816 41 H 0.195 0.805 42 H 0.101 0.899 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.769 -15.138 -2.123 20.573 hybrid contribution 0.034 1.022 -0.937 1.388 sum 13.804 -14.116 -3.061 19.979 Atomic orbital electron populations 1.69712 1.08470 1.30586 1.35933 1.26674 0.95720 1.04138 0.91428 0.85296 0.79226 0.76537 0.79192 1.19685 1.17535 1.18700 1.19588 0.94856 0.91872 1.43465 0.92731 1.17746 0.91730 0.91510 0.87957 1.21350 0.98620 0.97550 1.02348 1.21181 0.98552 0.92859 0.98603 1.20787 0.99879 0.98175 1.06191 1.21044 0.95029 0.95194 0.96513 1.19704 1.00938 0.96543 1.09797 1.18242 0.83038 0.78763 0.81680 1.90657 1.80204 1.38655 1.37104 1.48447 1.16111 1.26615 1.44625 1.22291 0.99389 0.86531 0.93898 1.22670 0.91059 0.96504 1.03769 1.21042 0.91702 0.96741 0.97056 0.89388 1.20723 0.92087 0.95756 0.92158 1.22193 1.01712 1.00703 0.95277 1.21991 0.92231 0.94546 1.01147 1.22518 0.99438 1.01095 0.96118 1.23248 0.97366 0.93183 0.93074 1.67404 1.00352 1.14959 1.39456 1.22313 0.82433 0.99914 0.96328 0.89889 0.87474 0.86160 0.84890 0.85344 0.91889 0.89631 0.88641 0.87984 0.83954 0.82045 0.81595 0.80504 0.89867 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.73 10.85 21.88 0.24 -44.50 16 2 C 0.04 1.92 5.29 85.37 0.45 2.37 16 3 Si 0.98 42.35 29.57 68.60 2.03 44.38 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.47 -27.57 7.80 23.42 0.18 -27.38 16 8 H 0.05 3.35 7.04 -2.91 -0.02 3.32 16 9 C 0.11 6.40 5.56 -21.11 -0.12 6.29 16 10 C -0.18 -9.39 8.64 22.72 0.20 -9.19 16 11 C -0.09 -4.10 10.01 22.26 0.22 -3.88 16 12 C -0.23 -9.13 10.03 22.41 0.22 -8.91 16 13 C -0.06 -2.46 8.51 22.50 0.19 -2.26 16 14 C -0.27 -13.32 5.48 -19.70 -0.11 -13.43 16 15 C 0.59 28.98 6.76 86.67 0.59 29.56 16 16 O -0.59 -33.73 15.99 -4.06 -0.06 -33.79 16 17 N -0.62 -23.24 3.33 -815.69 -2.71 -25.95 16 18 C 0.10 2.81 5.62 86.72 0.49 3.30 16 19 C -0.10 -2.13 6.41 31.78 0.20 -1.92 16 20 C -0.05 -1.15 3.41 -10.15 -0.03 -1.18 16 21 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 22 C 0.13 2.99 5.89 42.55 0.25 3.24 16 23 C -0.18 -3.39 9.13 22.36 0.20 -3.18 16 24 C -0.07 -1.03 10.18 22.47 0.23 -0.80 16 25 C -0.17 -2.18 10.11 22.36 0.23 -1.95 16 26 C 0.09 1.47 11.18 84.67 0.95 2.42 16 27 N -0.51 -12.00 10.27 -183.88 -1.89 -13.89 16 28 C 0.11 3.55 6.18 86.86 0.54 4.08 16 29 H 0.29 14.22 8.29 -92.71 -0.77 13.45 16 30 H 0.11 5.86 6.28 -2.91 -0.02 5.84 16 31 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 32 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 33 H 0.13 4.34 5.86 -2.91 -0.02 4.32 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.09 2.13 5.95 -2.39 -0.01 2.12 16 36 H 0.10 1.64 8.00 -2.38 -0.02 1.63 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.14 2.49 6.11 -2.91 -0.02 2.47 16 39 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 40 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 41 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.08 2.30 5.72 -2.39 -0.01 2.29 16 43 H 0.05 1.85 8.09 -2.39 -0.02 1.84 16 Total: -1.00 -74.82 353.57 3.51 -71.30 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 1.04 Total: 25.28 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 4.88 Total: -22.83 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -4.37 Total: -84.34 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.06 Total: -33.79 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -74.82 3.51 -71.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868031893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.193 kcal (2) G-P(sol) polarization free energy of solvation -74.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds