Wall clock time and date at job start Tue Mar 31 2020 13:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86806 * 119.99646 * 2 1 4 4 H 1.48503 * 109.47413 * 270.00271 * 3 2 1 5 5 H 1.48499 * 109.46887 * 30.00345 * 3 2 1 6 6 H 1.48502 * 109.46752 * 150.00078 * 3 2 1 7 7 C 1.40280 * 120.00682 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00377 * 184.07916 * 7 2 1 9 9 C 1.40877 * 119.99512 * 4.07786 * 7 2 1 10 10 C 1.40711 * 120.33138 * 324.07931 * 9 7 2 11 11 C 1.37582 * 119.88760 * 180.02562 * 10 9 7 12 12 C 1.38847 * 120.57211 * 359.72771 * 11 10 9 13 13 C 1.38198 * 120.67925 * 0.55666 * 12 11 10 14 14 C 1.39258 * 120.09070 * 359.44557 * 13 12 11 15 15 C 1.47369 * 120.28593 * 180.29743 * 14 13 12 16 16 O 1.21615 * 120.00186 * 173.97225 * 15 14 13 17 17 N 1.34779 * 119.99915 * 353.96508 * 15 14 13 18 18 C 1.39283 * 120.00122 * 185.37003 * 17 15 14 19 19 C 1.38942 * 119.79496 * 185.34059 * 18 17 15 20 20 C 1.38759 * 119.28237 * 179.97438 * 19 18 17 21 21 C 1.38086 * 118.56495 * 359.79889 * 20 19 18 22 22 C 1.38627 * 119.05397 * 0.30009 * 21 20 19 23 23 N 1.31737 * 121.13227 * 359.54042 * 22 21 20 24 24 C 1.50493 * 122.46973 * 180.40578 * 21 20 19 25 25 C 1.52789 * 110.46475 * 342.12515 * 24 21 20 26 26 C 1.53308 * 108.51811 * 51.18264 * 25 24 21 27 27 C 1.50353 * 118.64610 * 179.47335 * 20 19 18 28 28 H 0.96993 * 120.00311 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.05307 * 0.02562 * 10 9 7 30 30 H 1.07990 * 119.71729 * 180.02562 * 11 10 9 31 31 H 1.08000 * 119.65742 * 180.29944 * 12 11 10 32 32 H 1.08000 * 119.95715 * 179.72089 * 13 12 11 33 33 H 0.97000 * 120.00465 * 5.37542 * 17 15 14 34 34 H 1.08004 * 120.35961 * 359.96789 * 19 18 17 35 35 H 1.08000 * 119.43446 * 179.79981 * 22 21 20 36 36 H 1.09004 * 109.30282 * 102.42675 * 24 21 20 37 37 H 1.08997 * 109.30261 * 221.81954 * 24 21 20 38 38 H 1.08996 * 109.63430 * 170.89411 * 25 24 21 39 39 H 1.09006 * 109.62627 * 291.47486 * 25 24 21 40 40 H 1.09002 * 109.63744 * 49.82759 * 26 25 24 41 41 H 1.09000 * 109.63196 * 170.23219 * 26 25 24 42 42 H 1.09002 * 109.30680 * 283.05654 * 27 20 19 43 43 H 1.09005 * 109.30874 * 42.44816 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4876 2.0466 -1.4001 5 1 1.4375 2.6527 0.7001 6 1 3.5377 1.4403 0.7000 7 6 2.0078 -1.2148 -0.0005 8 1 3.0857 -1.2159 0.0660 9 6 1.3061 -2.4332 -0.0879 10 6 0.0576 -2.5811 0.5441 11 6 -0.6196 -3.7753 0.4533 12 6 -0.0845 -4.8379 -0.2625 13 6 1.1425 -4.7205 -0.8874 14 6 1.8519 -3.5244 -0.8137 15 6 3.1577 -3.3923 -1.4840 16 8 3.7218 -2.3152 -1.5098 17 7 3.7270 -4.4652 -2.0682 18 6 5.0092 -4.3684 -2.6033 19 6 5.5486 -5.4415 -3.3019 20 6 6.8268 -5.3333 -3.8310 21 6 7.5201 -4.1535 -3.6466 22 6 6.9208 -3.1243 -2.9370 23 7 5.7044 -3.2526 -2.4477 24 6 8.9069 -3.9378 -4.1898 25 6 9.5579 -5.2753 -4.5387 26 6 8.5924 -6.0702 -5.4255 27 6 7.4011 -6.5075 -4.5740 28 1 -0.4850 0.8400 0.0004 29 1 -0.3684 -1.7585 1.0994 30 1 -1.5777 -3.8857 0.9390 31 1 -0.6309 -5.7672 -0.3281 32 1 1.5498 -5.5560 -1.4374 33 1 3.2436 -5.3049 -2.1161 34 1 4.9792 -6.3501 -3.4317 35 1 7.4587 -2.2000 -2.7863 36 1 8.8507 -3.3198 -5.0860 37 1 9.5119 -3.4271 -3.4407 38 1 10.4893 -5.1000 -5.0770 39 1 9.7596 -5.8338 -3.6246 40 1 8.2453 -5.4409 -6.2450 41 1 9.1010 -6.9467 -5.8268 42 1 7.7273 -7.2623 -3.8584 43 1 6.6343 -6.9353 -5.2199 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868489082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:07 Heat of formation + Delta-G solvation = 17.083384 kcal Electronic energy + Delta-G solvation = -26042.172412 eV Core-core repulsion = 22437.420440 eV Total energy + Delta-G solvation = -3604.751972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.67530 -38.98030 -37.25198 -36.28557 -34.22397 -33.56747 -32.47450 -30.85291 -30.01862 -29.63409 -28.24025 -25.50128 -24.23813 -23.50875 -22.67599 -21.99568 -20.93840 -19.86978 -19.18633 -17.82199 -16.93745 -16.63672 -15.67846 -15.36980 -15.20028 -14.93298 -14.54233 -14.33729 -14.18666 -14.02746 -13.90391 -13.30749 -13.20952 -12.94394 -12.70912 -12.63310 -12.28902 -12.22382 -12.13848 -11.56455 -11.13457 -11.10892 -11.05576 -11.00328 -10.71070 -10.68971 -10.51969 -10.07641 -9.94025 -9.75859 -9.37177 -9.25007 -9.09369 -8.18700 -7.75711 -7.58617 -7.34895 -6.75236 -4.42757 1.35462 1.53540 2.34152 2.80727 3.12132 3.21137 3.26194 3.50960 3.90230 4.00541 4.34562 4.48208 4.57939 4.68939 4.70764 4.80120 4.92852 5.05568 5.27570 5.34660 5.37078 5.47600 5.49635 5.58496 5.65368 5.73816 5.80623 5.83831 5.91274 5.94169 6.04822 6.10857 6.19817 6.25789 6.44700 6.54801 6.72712 6.94108 7.08059 7.15982 7.28526 7.44354 7.57449 7.77700 7.92201 8.05787 8.16789 8.56535 8.65951 8.80479 8.87307 9.33010 10.15266 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.003426 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.766987 B = 8170.830673 C = 9808.190968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.067 3.933 3 Si 0.924 3.076 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.411 4.411 8 H 0.103 0.897 9 C 0.141 3.859 10 C -0.144 4.144 11 C -0.098 4.098 12 C -0.240 4.240 13 C -0.063 4.063 14 C -0.259 4.259 15 C 0.549 3.451 16 O -0.467 6.467 17 N -0.671 5.671 18 C 0.378 3.622 19 C -0.227 4.227 20 C -0.008 4.008 21 C -0.183 4.183 22 C 0.139 3.861 23 N -0.473 5.473 24 C -0.067 4.067 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.081 4.081 28 H 0.281 0.719 29 H 0.131 0.869 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.408 0.592 34 H 0.129 0.871 35 H 0.152 0.848 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.725 -10.260 -7.781 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.150 4.150 3 Si 0.749 3.251 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.440 4.440 8 H 0.121 0.879 9 C 0.137 3.863 10 C -0.164 4.164 11 C -0.117 4.117 12 C -0.260 4.260 13 C -0.081 4.081 14 C -0.264 4.264 15 C 0.343 3.657 16 O -0.338 6.338 17 N -0.317 5.317 18 C 0.147 3.853 19 C -0.251 4.251 20 C -0.016 4.016 21 C -0.187 4.187 22 C -0.022 4.022 23 N -0.187 5.187 24 C -0.105 4.105 25 C -0.157 4.157 26 C -0.156 4.156 27 C -0.118 4.118 28 H 0.093 0.907 29 H 0.148 0.852 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.245 0.755 34 H 0.147 0.853 35 H 0.169 0.831 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.395 -8.561 -7.235 16.711 hybrid contribution 0.124 -0.535 -0.606 0.818 sum 12.519 -9.096 -7.841 17.348 Atomic orbital electron populations 1.69677 1.07720 1.29468 1.35532 1.26129 0.94855 1.01957 0.92065 0.86037 0.80257 0.79363 0.79472 1.19285 1.20474 1.18236 1.20145 0.96525 0.89392 1.37901 0.87937 1.17508 0.91099 0.91053 0.86653 1.21647 0.96822 0.96221 1.01667 1.20872 0.98100 0.94104 0.98654 1.20310 0.98146 0.98811 1.08700 1.20627 0.94893 0.94892 0.97734 1.19423 0.97412 0.98176 1.11427 1.18693 0.85988 0.82832 0.78197 1.90793 1.62615 1.24931 1.55452 1.44058 1.13321 1.16099 1.58225 1.18563 0.86445 0.89801 0.90447 1.21373 0.97699 1.00151 1.05909 1.19478 0.92620 0.94575 0.94899 1.20308 0.98251 0.95310 1.04812 1.22721 0.90031 0.97642 0.91810 1.67754 1.06888 1.22839 1.21247 1.20246 0.91993 0.97619 1.00650 1.21546 0.98004 0.96219 0.99896 1.21547 0.95880 1.00099 0.98105 1.20438 0.97879 0.95175 0.98263 0.90749 0.85169 0.88962 0.89012 0.89377 0.75516 0.85284 0.83076 0.91050 0.90940 0.91585 0.91689 0.91579 0.91505 0.90288 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.68 10.69 55.56 0.59 -20.09 16 2 C 0.07 1.75 5.42 -17.30 -0.09 1.66 16 3 Si 0.92 20.30 29.56 -169.99 -5.03 15.27 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16 7 C -0.41 -11.40 7.61 -37.82 -0.29 -11.69 16 8 H 0.10 2.97 6.02 -52.49 -0.32 2.65 16 9 C 0.14 3.80 5.56 -106.54 -0.59 3.20 16 10 C -0.14 -3.67 8.65 -38.89 -0.34 -4.00 16 11 C -0.10 -2.21 10.01 -39.60 -0.40 -2.60 16 12 C -0.24 -5.05 10.03 -39.37 -0.39 -5.44 16 13 C -0.06 -1.32 9.53 -39.22 -0.37 -1.69 16 14 C -0.26 -6.35 5.92 -104.37 -0.62 -6.97 16 15 C 0.55 13.12 7.66 -12.54 -0.10 13.02 16 16 O -0.47 -12.68 11.93 5.26 0.06 -12.62 16 17 N -0.67 -12.77 5.34 -12.45 -0.07 -12.83 16 18 C 0.38 6.92 7.40 -154.83 -1.15 5.77 16 19 C -0.23 -3.21 9.57 -39.13 -0.37 -3.59 16 20 C -0.01 -0.10 5.74 -104.65 -0.60 -0.70 16 21 C -0.18 -2.36 5.74 -104.63 -0.60 -2.96 16 22 C 0.14 2.20 10.79 -17.45 -0.19 2.01 16 23 N -0.47 -9.50 7.93 -12.32 -0.10 -9.60 16 24 C -0.07 -0.64 5.71 -28.09 -0.16 -0.80 16 25 C -0.12 -0.93 5.97 -26.68 -0.16 -1.09 16 26 C -0.12 -0.91 5.98 -26.67 -0.16 -1.07 16 27 C -0.08 -0.72 5.71 -28.14 -0.16 -0.88 16 28 H 0.28 6.65 8.29 -40.82 -0.34 6.31 16 29 H 0.13 3.39 6.25 -52.48 -0.33 3.07 16 30 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 31 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.09 1.50 6.42 -52.49 -0.34 1.16 16 33 H 0.41 6.31 6.76 -40.82 -0.28 6.03 16 34 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 40 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -31.68 350.77 -11.44 -43.12 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.46 Total: 9.28 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -6.74 Total: -17.82 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.43 Total: -42.52 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.06 Total: -12.62 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.68 -11.44 -43.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868489082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.205 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds