Wall clock time and date at job start Tue Mar 31 2020 13:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86806 * 119.99646 * 2 1 4 4 H 1.48503 * 109.47413 * 270.00271 * 3 2 1 5 5 H 1.48499 * 109.46887 * 30.00345 * 3 2 1 6 6 H 1.48502 * 109.46752 * 150.00078 * 3 2 1 7 7 C 1.40280 * 120.00682 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00377 * 184.07916 * 7 2 1 9 9 C 1.40877 * 119.99512 * 4.07786 * 7 2 1 10 10 C 1.40711 * 120.33138 * 324.07931 * 9 7 2 11 11 C 1.37582 * 119.88760 * 180.02562 * 10 9 7 12 12 C 1.38847 * 120.57211 * 359.72771 * 11 10 9 13 13 C 1.38198 * 120.67925 * 0.55666 * 12 11 10 14 14 C 1.39258 * 120.09070 * 359.44557 * 13 12 11 15 15 C 1.47369 * 120.28593 * 180.29743 * 14 13 12 16 16 O 1.21615 * 120.00186 * 173.97225 * 15 14 13 17 17 N 1.34779 * 119.99915 * 353.96508 * 15 14 13 18 18 C 1.39283 * 120.00122 * 185.37003 * 17 15 14 19 19 C 1.38942 * 119.79496 * 185.34059 * 18 17 15 20 20 C 1.38759 * 119.28237 * 179.97438 * 19 18 17 21 21 C 1.38086 * 118.56495 * 359.79889 * 20 19 18 22 22 C 1.38627 * 119.05397 * 0.30009 * 21 20 19 23 23 N 1.31737 * 121.13227 * 359.54042 * 22 21 20 24 24 C 1.50493 * 122.46973 * 180.40578 * 21 20 19 25 25 C 1.52789 * 110.46475 * 342.12515 * 24 21 20 26 26 C 1.53308 * 108.51811 * 51.18264 * 25 24 21 27 27 C 1.50353 * 118.64610 * 179.47335 * 20 19 18 28 28 H 0.96993 * 120.00311 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.05307 * 0.02562 * 10 9 7 30 30 H 1.07990 * 119.71729 * 180.02562 * 11 10 9 31 31 H 1.08000 * 119.65742 * 180.29944 * 12 11 10 32 32 H 1.08000 * 119.95715 * 179.72089 * 13 12 11 33 33 H 0.97000 * 120.00465 * 5.37542 * 17 15 14 34 34 H 1.08004 * 120.35961 * 359.96789 * 19 18 17 35 35 H 1.08000 * 119.43446 * 179.79981 * 22 21 20 36 36 H 1.09004 * 109.30282 * 102.42675 * 24 21 20 37 37 H 1.08997 * 109.30261 * 221.81954 * 24 21 20 38 38 H 1.08996 * 109.63430 * 170.89411 * 25 24 21 39 39 H 1.09006 * 109.62627 * 291.47486 * 25 24 21 40 40 H 1.09002 * 109.63744 * 49.82759 * 26 25 24 41 41 H 1.09000 * 109.63196 * 170.23219 * 26 25 24 42 42 H 1.09002 * 109.30680 * 283.05654 * 27 20 19 43 43 H 1.09005 * 109.30874 * 42.44816 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4876 2.0466 -1.4001 5 1 1.4375 2.6527 0.7001 6 1 3.5377 1.4403 0.7000 7 6 2.0078 -1.2148 -0.0005 8 1 3.0857 -1.2159 0.0660 9 6 1.3061 -2.4332 -0.0879 10 6 0.0576 -2.5811 0.5441 11 6 -0.6196 -3.7753 0.4533 12 6 -0.0845 -4.8379 -0.2625 13 6 1.1425 -4.7205 -0.8874 14 6 1.8519 -3.5244 -0.8137 15 6 3.1577 -3.3923 -1.4840 16 8 3.7218 -2.3152 -1.5098 17 7 3.7270 -4.4652 -2.0682 18 6 5.0092 -4.3684 -2.6033 19 6 5.5486 -5.4415 -3.3019 20 6 6.8268 -5.3333 -3.8310 21 6 7.5201 -4.1535 -3.6466 22 6 6.9208 -3.1243 -2.9370 23 7 5.7044 -3.2526 -2.4477 24 6 8.9069 -3.9378 -4.1898 25 6 9.5579 -5.2753 -4.5387 26 6 8.5924 -6.0702 -5.4255 27 6 7.4011 -6.5075 -4.5740 28 1 -0.4850 0.8400 0.0004 29 1 -0.3684 -1.7585 1.0994 30 1 -1.5777 -3.8857 0.9390 31 1 -0.6309 -5.7672 -0.3281 32 1 1.5498 -5.5560 -1.4374 33 1 3.2436 -5.3049 -2.1161 34 1 4.9792 -6.3501 -3.4317 35 1 7.4587 -2.2000 -2.7863 36 1 8.8507 -3.3198 -5.0860 37 1 9.5119 -3.4271 -3.4407 38 1 10.4893 -5.1000 -5.0770 39 1 9.7596 -5.8338 -3.6246 40 1 8.2453 -5.4409 -6.2450 41 1 9.1010 -6.9467 -5.8268 42 1 7.7273 -7.2623 -3.8584 43 1 6.6343 -6.9353 -5.2199 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868489082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:06 Heat of formation + Delta-G solvation = 0.166656 kcal Electronic energy + Delta-G solvation = -26042.905976 eV Core-core repulsion = 22437.420440 eV Total energy + Delta-G solvation = -3605.485536 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.90859 -40.54869 -38.77671 -37.57399 -35.87654 -35.28584 -33.49866 -32.08726 -31.65350 -31.28376 -29.42087 -27.35675 -25.20133 -24.92614 -23.66728 -23.41739 -22.65148 -21.28002 -20.40040 -19.50890 -18.53309 -18.02020 -17.13390 -16.81113 -16.48811 -16.13554 -15.93084 -15.91738 -15.48755 -15.36948 -14.96163 -14.68266 -14.54094 -14.51267 -14.11018 -13.93165 -13.52606 -13.43838 -13.16370 -13.05230 -12.94223 -12.78325 -12.53480 -12.31535 -11.89921 -11.77002 -11.72059 -11.56979 -11.37688 -11.33273 -11.22992 -10.61569 -10.30255 -9.79059 -9.47606 -9.21997 -8.97925 -8.64590 -6.41410 0.09464 0.39019 0.60285 1.00298 1.29682 1.43495 1.47191 2.09599 2.19216 2.30039 2.75127 2.99304 3.52532 3.69003 3.72137 3.84581 4.00870 4.03421 4.09708 4.29626 4.32868 4.42583 4.51045 4.58118 4.65523 4.68522 4.73983 4.84440 4.90238 5.00958 5.06891 5.09712 5.11111 5.21223 5.24376 5.32055 5.32724 5.45362 5.50663 5.59758 5.61714 5.78912 5.94218 6.07504 6.09168 6.30116 6.42185 6.70192 6.86275 6.94247 7.26320 7.64275 8.27810 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.003426 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.766987 B = 8170.830673 C = 9808.190968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.031 3.969 3 Si 0.981 3.019 4 H -0.274 1.274 5 H -0.253 1.253 6 H -0.268 1.268 7 C -0.453 4.453 8 H 0.074 0.926 9 C 0.110 3.890 10 C -0.175 4.175 11 C -0.094 4.094 12 C -0.229 4.229 13 C -0.058 4.058 14 C -0.276 4.276 15 C 0.546 3.454 16 O -0.514 6.514 17 N -0.659 5.659 18 C 0.337 3.663 19 C -0.210 4.210 20 C -0.011 4.011 21 C -0.165 4.165 22 C 0.110 3.890 23 N -0.529 5.529 24 C -0.070 4.070 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.079 4.079 28 H 0.289 0.711 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.424 0.576 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.756 -13.817 -9.682 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.183 4.183 3 Si 0.802 3.198 4 H -0.200 1.200 5 H -0.177 1.177 6 H -0.193 1.193 7 C -0.482 4.482 8 H 0.092 0.908 9 C 0.106 3.894 10 C -0.195 4.195 11 C -0.112 4.112 12 C -0.248 4.248 13 C -0.077 4.077 14 C -0.281 4.281 15 C 0.339 3.661 16 O -0.388 6.388 17 N -0.307 5.307 18 C 0.107 3.893 19 C -0.233 4.233 20 C -0.019 4.019 21 C -0.169 4.169 22 C -0.049 4.049 23 N -0.244 5.244 24 C -0.107 4.107 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.116 4.116 28 H 0.099 0.901 29 H 0.131 0.869 30 H 0.140 0.860 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.264 0.736 34 H 0.180 0.820 35 H 0.175 0.825 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.444 -12.170 -9.153 20.313 hybrid contribution -0.087 0.303 -0.123 0.339 sum 13.356 -11.866 -9.276 20.131 Atomic orbital electron populations 1.69702 1.08283 1.30373 1.36730 1.26730 0.95709 1.04143 0.91692 0.85234 0.78963 0.76562 0.78999 1.19952 1.17664 1.19256 1.20033 0.95323 0.91218 1.41610 0.90816 1.17880 0.92195 0.91801 0.87529 1.21564 0.97315 0.97445 1.03128 1.21263 0.98815 0.93181 0.97945 1.20854 0.97842 0.99755 1.06351 1.21083 0.94621 0.94785 0.97206 1.19787 0.98193 0.98983 1.11127 1.18751 0.85855 0.83331 0.78144 1.90764 1.63763 1.27034 1.57197 1.43590 1.13981 1.15351 1.57794 1.18839 0.86323 0.91105 0.92992 1.21704 0.98288 0.99691 1.03653 1.20029 0.91969 0.95655 0.94284 1.20718 0.99499 0.94388 1.02302 1.22981 0.89462 0.99255 0.93231 1.67538 1.08894 1.24878 1.23113 1.20376 0.89982 0.99342 1.01047 1.21567 0.98743 0.94850 1.00270 1.21579 0.95356 1.00967 0.97620 1.20559 0.98768 0.93616 0.98607 0.90052 0.86942 0.85999 0.84558 0.84722 0.73624 0.81982 0.82526 0.90148 0.90178 0.89580 0.91698 0.91969 0.89137 0.88694 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.93 10.69 21.88 0.23 -44.69 16 2 C 0.03 1.73 5.42 85.37 0.46 2.19 16 3 Si 0.98 44.26 29.56 68.60 2.03 46.28 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.45 -27.09 7.61 23.41 0.18 -26.91 16 8 H 0.07 4.71 6.02 -2.91 -0.02 4.69 16 9 C 0.11 6.21 5.56 -21.11 -0.12 6.09 16 10 C -0.18 -9.19 8.65 22.72 0.20 -8.99 16 11 C -0.09 -4.07 10.01 22.26 0.22 -3.84 16 12 C -0.23 -8.86 10.03 22.41 0.22 -8.63 16 13 C -0.06 -2.34 9.53 22.51 0.21 -2.13 16 14 C -0.28 -13.83 5.92 -19.70 -0.12 -13.95 16 15 C 0.55 27.24 7.66 86.65 0.66 27.90 16 16 O -0.51 -30.00 11.93 -4.08 -0.05 -30.05 16 17 N -0.66 -25.21 5.34 -311.56 -1.66 -26.87 16 18 C 0.34 12.43 7.40 132.93 0.98 13.42 16 19 C -0.21 -5.52 9.57 22.56 0.22 -5.30 16 20 C -0.01 -0.26 5.74 -19.88 -0.11 -0.37 16 21 C -0.17 -4.08 5.74 -19.87 -0.11 -4.19 16 22 C 0.11 3.60 10.79 84.80 0.91 4.52 16 23 N -0.53 -22.34 7.93 -192.89 -1.53 -23.87 16 24 C -0.07 -1.16 5.71 29.71 0.17 -0.99 16 25 C -0.12 -1.39 5.97 30.63 0.18 -1.21 16 26 C -0.12 -1.30 5.98 30.64 0.18 -1.12 16 27 C -0.08 -1.07 5.71 29.68 0.17 -0.90 16 28 H 0.29 14.21 8.29 -92.71 -0.77 13.44 16 29 H 0.11 6.20 6.25 -2.91 -0.02 6.18 16 30 H 0.12 4.50 8.06 -2.92 -0.02 4.47 16 31 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 32 H 0.14 4.03 6.42 -2.91 -0.02 4.02 16 33 H 0.42 12.39 6.76 -92.71 -0.63 11.77 16 34 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 35 H 0.16 4.59 8.06 -2.91 -0.02 4.56 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.23 8.13 -2.39 -0.02 1.21 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.80 8.10 -2.38 -0.02 0.78 16 40 H 0.06 0.76 8.10 -2.39 -0.02 0.74 16 41 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -76.81 350.77 3.97 -72.85 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 0.42 Total: 30.75 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 4.52 Total: -24.41 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -2.96 Total: -95.43 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.05 Total: -30.05 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -76.81 3.97 -72.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868489082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.015 kcal (2) G-P(sol) polarization free energy of solvation -76.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds