Wall clock time and date at job start Tue Mar 31 2020 13:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86793 * 120.00025 * 2 1 4 4 H 1.48504 * 109.47011 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47255 * 119.99730 * 3 2 1 6 6 H 1.48493 * 109.47525 * 239.99994 * 3 2 1 7 7 C 1.40034 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00061 * 4.83179 * 7 2 1 9 9 C 1.41333 * 119.99709 * 184.82367 * 7 2 1 10 10 C 1.40614 * 119.78422 * 185.13331 * 9 7 2 11 11 C 1.38307 * 119.12588 * 179.97438 * 10 9 7 12 12 C 1.38699 * 118.67117 * 0.02562 * 11 10 9 13 13 C 1.39628 * 119.49211 * 359.97438 * 12 11 10 14 14 N 1.39280 * 119.56943 * 180.02562 * 13 12 11 15 15 C 1.34770 * 119.99867 * 339.09966 * 14 13 12 16 16 O 1.21273 * 120.00695 * 3.71209 * 15 14 13 17 17 C 1.50707 * 119.99836 * 183.71715 * 15 14 13 18 18 C 1.50692 * 109.47276 * 179.97438 * 17 15 14 19 19 C 1.38261 * 119.99719 * 269.72604 * 18 17 15 20 20 C 1.38215 * 120.00093 * 179.78631 * 19 18 17 21 21 C 1.38262 * 119.99629 * 0.46435 * 20 19 18 22 22 C 1.38217 * 120.00185 * 359.76825 * 21 20 19 23 23 C 1.50694 * 120.00202 * 180.02562 * 22 21 20 24 24 C 1.53003 * 117.49929 * 8.64141 * 23 22 21 25 25 C 1.53000 * 60.00116 * 252.51068 * 24 23 22 26 26 C 1.38211 * 120.00261 * 89.99745 * 18 17 15 27 27 N 1.31929 * 120.85530 * 359.72563 * 13 12 11 28 28 H 0.97005 * 119.99682 * 174.98970 * 1 2 3 29 29 H 1.07998 * 120.43936 * 359.97438 * 10 9 7 30 30 H 1.07999 * 120.66583 * 180.02562 * 11 10 9 31 31 H 1.08003 * 120.25255 * 179.97438 * 12 11 10 32 32 H 0.97005 * 119.99467 * 159.09511 * 14 13 12 33 33 H 1.09000 * 109.46943 * 300.00184 * 17 15 14 34 34 H 1.08996 * 109.47117 * 59.99471 * 17 15 14 35 35 H 1.08002 * 120.00295 * 359.97438 * 19 18 17 36 36 H 1.07997 * 120.00710 * 180.24902 * 20 19 18 37 37 H 1.07998 * 119.99768 * 179.78808 * 21 20 19 38 38 H 1.08997 * 115.55414 * 154.34606 * 23 22 21 39 39 H 1.09010 * 117.49825 * 0.02562 * 24 23 22 40 40 H 1.08997 * 117.50209 * 145.01545 * 24 23 22 41 41 H 1.08998 * 117.49600 * 252.50798 * 25 24 23 42 42 H 1.09003 * 117.51501 * 107.47786 * 25 24 23 43 43 H 1.07994 * 119.99967 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2764 2.7464 0.0006 5 1 3.0951 1.6964 1.2125 6 1 3.0951 1.6964 -1.2124 7 6 2.0076 -1.2127 0.0005 8 1 1.4705 -2.1464 -0.0778 9 6 3.4172 -1.2148 0.1035 10 6 4.1236 -2.4257 -0.0050 11 6 5.5029 -2.4119 0.0972 12 6 6.1427 -1.1989 0.3046 13 6 5.3850 -0.0303 0.4038 14 7 6.0259 1.1888 0.6115 15 6 7.2708 1.2164 1.1269 16 8 7.8592 0.1790 1.3470 17 6 7.9318 2.5364 1.4298 18 6 9.3076 2.2916 1.9939 19 6 9.4816 2.1604 3.3592 20 6 10.7428 1.9314 3.8763 21 6 11.8317 1.8431 3.0289 22 6 11.6585 1.9791 1.6644 23 6 12.8453 1.8823 0.7408 24 6 14.1769 1.4336 1.3462 25 6 13.9765 2.8939 0.9358 26 6 10.3962 2.2038 1.1469 27 7 4.0705 -0.0650 0.2974 28 1 -0.4850 -0.8369 -0.0734 29 1 3.5963 -3.3543 -0.1661 30 1 6.0703 -3.3273 0.0172 31 1 7.2187 -1.1586 0.3887 32 1 5.5761 2.0179 0.3850 33 1 8.0132 3.1208 0.5133 34 1 7.3332 3.0839 2.1577 35 1 8.6316 2.2338 4.0215 36 1 10.8782 1.8249 4.9424 37 1 12.8177 1.6676 3.4333 38 1 12.6234 1.5657 -0.2783 39 1 14.1944 1.2080 2.4126 40 1 14.8311 0.8215 0.7255 41 1 14.4991 3.2425 0.0450 42 1 13.8621 3.6296 1.7319 43 1 10.2609 2.3102 0.0808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882471069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:38 Heat of formation + Delta-G solvation = 40.101636 kcal Electronic energy + Delta-G solvation = -25495.214827 eV Core-core repulsion = 21891.461001 eV Total energy + Delta-G solvation = -3603.753825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.43589 -39.61647 -38.16894 -36.96563 -34.57140 -33.53941 -32.76481 -31.11467 -30.90952 -29.71479 -27.60203 -25.32091 -23.99704 -23.02866 -22.54398 -21.93240 -21.70962 -20.15288 -19.57686 -18.37153 -17.44332 -16.98665 -16.54275 -16.15473 -15.48278 -15.09817 -14.97726 -14.63112 -14.35077 -14.24568 -13.90533 -13.64543 -13.24356 -12.97249 -12.91745 -12.69724 -12.38588 -12.25933 -12.04333 -11.88685 -11.84980 -11.33797 -11.19683 -11.08909 -10.85841 -10.84084 -10.60377 -10.34348 -10.00223 -9.67923 -9.24723 -9.14827 -8.82731 -8.60020 -8.55220 -7.76124 -7.48929 -7.23133 -4.79030 1.20685 1.30859 2.21731 2.63525 3.02061 3.21362 3.48529 3.52807 3.62521 3.89431 3.96227 4.26204 4.37607 4.51516 4.60953 4.63259 4.70166 4.80915 4.84935 4.98839 5.00677 5.16685 5.26943 5.34351 5.39253 5.49049 5.50943 5.59522 5.76157 5.78820 5.85828 5.93042 5.97632 6.08301 6.37343 6.45025 6.47368 6.51202 6.51745 6.57529 6.90680 7.12726 7.18820 7.42368 7.55793 7.62988 7.76047 8.10530 8.28419 8.45277 8.64163 9.39256 9.98424 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.023596 B = 0.002706 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.352089 B =10344.066045 C =10849.759606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.042 3.958 3 Si 1.155 2.845 4 H -0.333 1.333 5 H -0.280 1.280 6 H -0.295 1.295 7 C -0.476 4.476 8 H 0.083 0.917 9 C 0.273 3.727 10 C -0.276 4.276 11 C -0.036 4.036 12 C -0.314 4.314 13 C 0.385 3.615 14 N -0.656 5.656 15 C 0.515 3.485 16 O -0.504 6.504 17 C -0.102 4.102 18 C -0.058 4.058 19 C -0.107 4.107 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.053 4.053 23 C -0.116 4.116 24 C -0.178 4.178 25 C -0.170 4.170 26 C -0.097 4.097 27 N -0.599 5.599 28 H 0.283 0.717 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.145 0.855 32 H 0.407 0.593 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.205 8.506 3.276 24.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.179 4.179 3 Si 0.990 3.010 4 H -0.266 1.266 5 H -0.208 1.208 6 H -0.223 1.223 7 C -0.508 4.508 8 H 0.101 0.899 9 C 0.148 3.852 10 C -0.299 4.299 11 C -0.061 4.061 12 C -0.338 4.338 13 C 0.154 3.846 14 N -0.300 5.300 15 C 0.302 3.698 16 O -0.378 6.378 17 C -0.142 4.142 18 C -0.058 4.058 19 C -0.125 4.125 20 C -0.133 4.133 21 C -0.141 4.141 22 C -0.053 4.053 23 C -0.134 4.134 24 C -0.214 4.214 25 C -0.207 4.207 26 C -0.115 4.115 27 N -0.325 5.325 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.163 0.837 32 H 0.242 0.758 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 21.874 10.036 3.578 24.331 hybrid contribution 0.074 -2.412 -0.246 2.425 sum 21.948 7.625 3.331 23.472 Atomic orbital electron populations 1.70647 1.08164 1.32802 1.31152 1.27794 0.95342 1.06218 0.88533 0.81843 0.70730 0.69601 0.78778 1.26640 1.20772 1.22285 1.20721 0.90351 0.96345 1.43421 0.89889 1.18275 0.93448 0.85941 0.87493 1.21613 0.94017 0.98363 1.15885 1.20965 0.94156 0.96569 0.94362 1.21753 1.01409 0.91469 1.19178 1.18129 0.88580 0.84379 0.93466 1.43304 1.15994 1.08622 1.62127 1.20491 0.80825 0.91483 0.77035 1.90617 1.63087 1.33786 1.50312 1.20697 0.94159 0.95662 1.03698 1.19200 0.93293 0.99799 0.93556 1.21003 0.97372 0.99577 0.94564 1.21040 0.92596 1.00088 0.99599 1.20980 0.98874 1.01269 0.92933 1.19025 0.93217 0.99868 0.93188 1.21032 0.87896 1.05066 0.99403 1.23062 0.98950 0.97597 1.01833 1.23021 1.01506 0.92669 1.03527 1.20747 0.91475 0.99845 0.99398 1.65978 1.06795 1.29732 1.29974 0.90588 0.87713 0.87644 0.83739 0.75829 0.87582 0.87476 0.86107 0.86077 0.86248 0.86942 0.88364 0.88474 0.88526 0.88620 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.93 13.65 55.55 0.76 -21.17 16 2 C 0.04 1.14 5.52 -17.34 -0.10 1.05 16 3 Si 1.15 27.60 25.61 -169.99 -4.35 23.25 16 4 H -0.33 -7.86 7.11 56.52 0.40 -7.46 16 5 H -0.28 -6.55 6.61 56.52 0.37 -6.18 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.48 -13.04 9.57 -37.73 -0.36 -13.40 16 8 H 0.08 2.27 8.05 -52.49 -0.42 1.84 16 9 C 0.27 7.22 6.40 -85.00 -0.54 6.67 16 10 C -0.28 -6.68 9.83 -38.66 -0.38 -7.06 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 12 C -0.31 -7.14 8.90 -38.89 -0.35 -7.49 16 13 C 0.38 8.83 7.51 -154.96 -1.16 7.67 16 14 N -0.66 -11.92 5.41 -11.40 -0.06 -11.98 16 15 C 0.52 8.36 7.72 -10.98 -0.08 8.27 16 16 O -0.50 -9.88 12.70 5.56 0.07 -9.81 16 17 C -0.10 -1.13 5.83 -29.04 -0.17 -1.30 16 18 C -0.06 -0.70 4.37 -104.63 -0.46 -1.15 16 19 C -0.11 -1.25 9.70 -39.58 -0.38 -1.63 16 20 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 21 C -0.12 -1.27 9.30 -39.58 -0.37 -1.64 16 22 C -0.05 -0.58 5.61 -104.62 -0.59 -1.16 16 23 C -0.12 -1.04 6.04 -91.77 -0.55 -1.59 16 24 C -0.18 -1.32 9.86 -26.73 -0.26 -1.58 16 25 C -0.17 -1.23 10.16 -26.73 -0.27 -1.50 16 26 C -0.10 -1.12 9.39 -39.58 -0.37 -1.50 16 27 N -0.60 -15.19 4.53 -10.26 -0.05 -15.24 16 28 H 0.28 7.38 8.72 -40.82 -0.36 7.02 16 29 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 30 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.15 3.24 5.17 -52.92 -0.27 2.97 16 32 H 0.41 6.34 8.82 -40.82 -0.36 5.98 16 33 H 0.11 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.11 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 1.00 6.02 -52.49 -0.32 0.69 16 38 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.10 0.70 6.18 -51.92 -0.32 0.37 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -32.09 360.63 -10.92 -43.01 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.52 Total: 6.68 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -7.20 Total: -20.18 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.65 Total: -48.39 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 14 Polarization: 27.60 SS G_CDS: -4.35 Total: 23.25 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.09 -10.92 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.111 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds