Wall clock time and date at job start Tue Mar 31 2020 13:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86793 * 120.00025 * 2 1 4 4 H 1.48504 * 109.47011 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47255 * 119.99730 * 3 2 1 6 6 H 1.48493 * 109.47525 * 239.99994 * 3 2 1 7 7 C 1.40034 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00061 * 4.83179 * 7 2 1 9 9 C 1.41333 * 119.99709 * 184.82367 * 7 2 1 10 10 C 1.40614 * 119.78422 * 185.13331 * 9 7 2 11 11 C 1.38307 * 119.12588 * 179.97438 * 10 9 7 12 12 C 1.38699 * 118.67117 * 0.02562 * 11 10 9 13 13 C 1.39628 * 119.49211 * 359.97438 * 12 11 10 14 14 N 1.39280 * 119.56943 * 180.02562 * 13 12 11 15 15 C 1.34770 * 119.99867 * 339.09966 * 14 13 12 16 16 O 1.21273 * 120.00695 * 3.71209 * 15 14 13 17 17 C 1.50707 * 119.99836 * 183.71715 * 15 14 13 18 18 C 1.50692 * 109.47276 * 179.97438 * 17 15 14 19 19 C 1.38261 * 119.99719 * 269.72604 * 18 17 15 20 20 C 1.38215 * 120.00093 * 179.78631 * 19 18 17 21 21 C 1.38262 * 119.99629 * 0.46435 * 20 19 18 22 22 C 1.38217 * 120.00185 * 359.76825 * 21 20 19 23 23 C 1.50694 * 120.00202 * 180.02562 * 22 21 20 24 24 C 1.53003 * 117.49929 * 8.64141 * 23 22 21 25 25 C 1.53000 * 60.00116 * 252.51068 * 24 23 22 26 26 C 1.38211 * 120.00261 * 89.99745 * 18 17 15 27 27 N 1.31929 * 120.85530 * 359.72563 * 13 12 11 28 28 H 0.97005 * 119.99682 * 174.98970 * 1 2 3 29 29 H 1.07998 * 120.43936 * 359.97438 * 10 9 7 30 30 H 1.07999 * 120.66583 * 180.02562 * 11 10 9 31 31 H 1.08003 * 120.25255 * 179.97438 * 12 11 10 32 32 H 0.97005 * 119.99467 * 159.09511 * 14 13 12 33 33 H 1.09000 * 109.46943 * 300.00184 * 17 15 14 34 34 H 1.08996 * 109.47117 * 59.99471 * 17 15 14 35 35 H 1.08002 * 120.00295 * 359.97438 * 19 18 17 36 36 H 1.07997 * 120.00710 * 180.24902 * 20 19 18 37 37 H 1.07998 * 119.99768 * 179.78808 * 21 20 19 38 38 H 1.08997 * 115.55414 * 154.34606 * 23 22 21 39 39 H 1.09010 * 117.49825 * 0.02562 * 24 23 22 40 40 H 1.08997 * 117.50209 * 145.01545 * 24 23 22 41 41 H 1.08998 * 117.49600 * 252.50798 * 25 24 23 42 42 H 1.09003 * 117.51501 * 107.47786 * 25 24 23 43 43 H 1.07994 * 119.99967 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2764 2.7464 0.0006 5 1 3.0951 1.6964 1.2125 6 1 3.0951 1.6964 -1.2124 7 6 2.0076 -1.2127 0.0005 8 1 1.4705 -2.1464 -0.0778 9 6 3.4172 -1.2148 0.1035 10 6 4.1236 -2.4257 -0.0050 11 6 5.5029 -2.4119 0.0972 12 6 6.1427 -1.1989 0.3046 13 6 5.3850 -0.0303 0.4038 14 7 6.0259 1.1888 0.6115 15 6 7.2708 1.2164 1.1269 16 8 7.8592 0.1790 1.3470 17 6 7.9318 2.5364 1.4298 18 6 9.3076 2.2916 1.9939 19 6 9.4816 2.1604 3.3592 20 6 10.7428 1.9314 3.8763 21 6 11.8317 1.8431 3.0289 22 6 11.6585 1.9791 1.6644 23 6 12.8453 1.8823 0.7408 24 6 14.1769 1.4336 1.3462 25 6 13.9765 2.8939 0.9358 26 6 10.3962 2.2038 1.1469 27 7 4.0705 -0.0650 0.2974 28 1 -0.4850 -0.8369 -0.0734 29 1 3.5963 -3.3543 -0.1661 30 1 6.0703 -3.3273 0.0172 31 1 7.2187 -1.1586 0.3887 32 1 5.5761 2.0179 0.3850 33 1 8.0132 3.1208 0.5133 34 1 7.3332 3.0839 2.1577 35 1 8.6316 2.2338 4.0215 36 1 10.8782 1.8249 4.9424 37 1 12.8177 1.6676 3.4333 38 1 12.6234 1.5657 -0.2783 39 1 14.1944 1.2080 2.4126 40 1 14.8311 0.8215 0.7255 41 1 14.4991 3.2425 0.0450 42 1 13.8621 3.6296 1.7319 43 1 10.2609 2.3102 0.0808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:37 Heat of formation + Delta-G solvation = 24.082527 kcal Electronic energy + Delta-G solvation = -25495.909468 eV Core-core repulsion = 21891.461001 eV Total energy + Delta-G solvation = -3604.448466 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77841 -40.63834 -39.75054 -37.69297 -36.24313 -35.36830 -33.70786 -32.99333 -31.69772 -31.39319 -28.68087 -27.20264 -24.79598 -24.19108 -23.61553 -23.31247 -22.78940 -21.57861 -20.61696 -20.21933 -18.85891 -18.07971 -17.77567 -17.06530 -16.93296 -16.57319 -16.21048 -15.88544 -15.55248 -15.41400 -15.22954 -14.85789 -14.65114 -14.63026 -14.26862 -14.01584 -13.74577 -13.57628 -13.14725 -12.98036 -12.89140 -12.68885 -12.45024 -12.21489 -12.03284 -11.83498 -11.71523 -11.65177 -11.52935 -11.21880 -11.12313 -10.68343 -10.40886 -9.70541 -9.67857 -9.38389 -9.35935 -9.17943 -6.83401 0.37684 0.49572 0.52070 0.72183 1.55799 1.57360 1.75835 1.89038 2.10394 2.47339 2.66525 2.71163 3.17735 3.52786 3.55112 3.68036 3.85724 3.99806 4.02744 4.09431 4.16299 4.19972 4.26454 4.40672 4.41772 4.52711 4.60193 4.65320 4.67821 4.77749 4.81065 4.82662 4.98199 5.12315 5.15488 5.21028 5.26628 5.34060 5.38206 5.42395 5.58100 5.66704 5.71488 5.72704 5.80989 5.92951 6.12169 6.31655 6.40986 6.64764 7.08951 7.48833 7.93836 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.023596 B = 0.002706 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.352089 B =10344.066045 C =10849.759606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.011 3.989 3 Si 1.187 2.813 4 H -0.329 1.329 5 H -0.273 1.273 6 H -0.290 1.290 7 C -0.508 4.508 8 H 0.066 0.934 9 C 0.257 3.743 10 C -0.294 4.294 11 C -0.030 4.030 12 C -0.312 4.312 13 C 0.376 3.624 14 N -0.653 5.653 15 C 0.517 3.483 16 O -0.538 6.538 17 C -0.091 4.091 18 C -0.073 4.073 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.130 4.130 22 C -0.061 4.061 23 C -0.135 4.135 24 C -0.175 4.175 25 C -0.159 4.159 26 C -0.113 4.113 27 N -0.610 5.610 28 H 0.280 0.720 29 H 0.113 0.887 30 H 0.141 0.859 31 H 0.154 0.846 32 H 0.420 0.580 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.170 9.844 3.614 27.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.205 4.205 3 Si 1.019 2.981 4 H -0.263 1.263 5 H -0.200 1.200 6 H -0.218 1.218 7 C -0.541 4.541 8 H 0.085 0.915 9 C 0.132 3.868 10 C -0.316 4.316 11 C -0.054 4.054 12 C -0.336 4.336 13 C 0.145 3.855 14 N -0.299 5.299 15 C 0.307 3.693 16 O -0.414 6.414 17 C -0.130 4.130 18 C -0.074 4.074 19 C -0.143 4.143 20 C -0.141 4.141 21 C -0.147 4.147 22 C -0.061 4.061 23 C -0.153 4.153 24 C -0.212 4.212 25 C -0.196 4.196 26 C -0.131 4.131 27 N -0.336 5.336 28 H 0.091 0.909 29 H 0.131 0.869 30 H 0.159 0.841 31 H 0.171 0.829 32 H 0.257 0.743 33 H 0.156 0.844 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.130 0.870 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.114 0.886 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 24.856 11.394 3.919 27.622 hybrid contribution -0.579 -2.901 -0.316 2.975 sum 24.276 8.493 3.604 25.970 Atomic orbital electron populations 1.70675 1.08476 1.32648 1.33337 1.28682 0.95620 1.08190 0.87987 0.81453 0.70113 0.67460 0.79062 1.26291 1.20037 1.21794 1.20713 0.91247 0.96005 1.46090 0.91538 1.18454 0.93424 0.87334 0.87616 1.21762 0.95014 0.98080 1.16761 1.21358 0.93573 0.97988 0.92490 1.22098 1.01944 0.91778 1.17784 1.18504 0.88038 0.86482 0.92453 1.43426 1.16611 1.07582 1.62328 1.21451 0.79640 0.93016 0.75213 1.90581 1.63623 1.35685 1.51500 1.20760 0.93471 0.92809 1.05928 1.19356 0.93700 1.00487 0.93835 1.21241 0.98126 1.00116 0.94837 1.21343 0.92429 0.99554 1.00758 1.21256 0.99721 1.00838 0.92910 1.19313 0.93731 0.99257 0.93830 1.21072 0.88011 1.07051 0.99210 1.23160 0.97847 0.98005 1.02140 1.23076 1.00063 0.92494 1.03991 1.20970 0.91912 1.00304 0.99888 1.66001 1.07978 1.29446 1.30203 0.90940 0.86896 0.84139 0.82928 0.74275 0.84383 0.84859 0.85475 0.84264 0.84548 0.87038 0.88065 0.87500 0.87240 0.88551 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.19 13.65 21.84 0.30 -45.90 16 2 C 0.01 0.63 5.52 85.29 0.47 1.10 16 3 Si 1.19 55.60 25.61 68.60 1.76 57.36 16 4 H -0.33 -15.08 7.11 99.48 0.71 -14.37 16 5 H -0.27 -12.32 6.61 99.48 0.66 -11.66 16 6 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 7 C -0.51 -28.58 9.57 23.47 0.22 -28.36 16 8 H 0.07 3.81 8.05 -2.91 -0.02 3.79 16 9 C 0.26 13.65 6.40 40.21 0.26 13.91 16 10 C -0.29 -14.06 9.83 22.87 0.22 -13.84 16 11 C -0.03 -1.28 10.15 22.40 0.23 -1.05 16 12 C -0.31 -13.61 8.90 22.72 0.20 -13.41 16 13 C 0.38 16.64 7.51 133.23 1.00 17.64 16 14 N -0.65 -22.17 5.41 -308.38 -1.67 -23.84 16 15 C 0.52 15.49 7.72 87.66 0.68 16.17 16 16 O -0.54 -20.06 12.70 -3.01 -0.04 -20.10 16 17 C -0.09 -1.71 5.83 29.10 0.17 -1.54 16 18 C -0.07 -1.60 4.37 -19.87 -0.09 -1.69 16 19 C -0.13 -2.69 9.70 22.27 0.22 -2.48 16 20 C -0.12 -2.39 10.05 22.27 0.22 -2.17 16 21 C -0.13 -2.45 9.30 22.27 0.21 -2.24 16 22 C -0.06 -1.23 5.61 -19.87 -0.11 -1.35 16 23 C -0.14 -2.18 6.04 -11.54 -0.07 -2.25 16 24 C -0.17 -2.21 9.86 30.60 0.30 -1.91 16 25 C -0.16 -1.93 10.16 30.60 0.31 -1.62 16 26 C -0.11 -2.42 9.39 22.27 0.21 -2.21 16 27 N -0.61 -30.40 4.53 -186.36 -0.85 -31.24 16 28 H 0.28 15.17 8.72 -92.70 -0.81 14.36 16 29 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 30 H 0.14 4.93 8.06 -2.91 -0.02 4.90 16 31 H 0.15 6.52 5.17 -9.82 -0.05 6.46 16 32 H 0.42 11.90 8.82 -92.70 -0.82 11.08 16 33 H 0.14 1.76 8.09 -2.39 -0.02 1.74 16 34 H 0.13 1.88 8.08 -2.39 -0.02 1.86 16 35 H 0.13 2.45 8.06 -2.91 -0.02 2.42 16 36 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.14 1.99 6.02 -2.91 -0.02 1.97 16 38 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.10 1.20 6.18 -2.38 -0.01 1.19 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -69.49 360.63 4.26 -65.23 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.10 Total: 25.78 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 4.65 Total: -27.29 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -2.22 Total: -100.98 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.04 Total: -20.10 kcal Atomic # 14 Polarization: 55.60 SS G_CDS: 1.76 Total: 57.36 kcal Total: -69.49 4.26 -65.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.309 kcal (2) G-P(sol) polarization free energy of solvation -69.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds