Wall clock time and date at job start Tue Mar 31 2020 13:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86794 * 120.00069 * 2 1 4 4 H 1.48496 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47040 * 300.00418 * 3 2 1 6 6 H 1.48500 * 109.47231 * 60.00255 * 3 2 1 7 7 C 1.40028 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99770 * 179.97438 * 7 2 1 9 9 C 1.41334 * 120.00225 * 359.71652 * 7 2 1 10 10 C 1.40621 * 119.78975 * 180.28361 * 9 7 2 11 11 C 1.38304 * 119.12702 * 180.02562 * 10 9 7 12 12 C 1.38700 * 118.66906 * 359.97438 * 11 10 9 13 13 C 1.39628 * 119.49936 * 0.02562 * 12 11 10 14 14 N 1.39272 * 119.57332 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99730 * 174.71541 * 14 13 12 16 16 O 1.21272 * 119.99969 * 5.15080 * 15 14 13 17 17 C 1.50700 * 120.00024 * 185.15353 * 15 14 13 18 18 H 1.09004 * 109.67661 * 300.51903 * 17 15 14 19 19 C 1.53326 * 109.68324 * 180.02562 * 17 15 14 20 20 C 1.52736 * 108.39579 * 170.41308 * 19 17 15 21 21 C 1.50631 * 110.59753 * 51.04923 * 20 19 17 22 22 C 1.38922 * 117.75126 * 162.32884 * 21 20 19 23 23 C 1.37932 * 120.54295 * 179.74439 * 22 21 20 24 24 C 1.38265 * 119.77462 * 359.96917 * 23 22 21 25 25 C 1.37937 * 119.76913 * 0.13307 * 24 23 22 26 26 C 1.37658 * 122.56724 * 342.27848 * 21 20 19 27 27 C 1.50631 * 122.56591 * 0.72296 * 26 21 20 28 28 N 1.31934 * 120.84989 * 359.72083 * 13 12 11 29 29 H 0.96998 * 119.99922 * 359.97438 * 1 2 3 30 30 H 1.07991 * 120.43343 * 359.96925 * 10 9 7 31 31 H 1.07996 * 120.66462 * 179.97438 * 11 10 9 32 32 H 1.07999 * 120.24616 * 179.97438 * 12 11 10 33 33 H 0.96993 * 120.00003 * 354.71000 * 14 13 12 34 34 H 1.09006 * 109.67602 * 290.13541 * 19 17 15 35 35 H 1.08994 * 109.68142 * 50.64525 * 19 17 15 36 36 H 1.09003 * 109.24878 * 171.33836 * 20 19 17 37 37 H 1.08997 * 109.24924 * 290.76291 * 20 19 17 38 38 H 1.07995 * 119.72897 * 359.71503 * 22 21 20 39 39 H 1.08000 * 120.11279 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.11488 * 180.14806 * 24 23 22 41 41 H 1.08005 * 119.72450 * 180.02562 * 25 24 23 42 42 H 1.08994 * 109.26559 * 221.88280 * 27 26 21 43 43 H 1.09001 * 109.24491 * 102.44942 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7013 1.3463 -0.0006 5 1 1.8825 2.3964 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3009 -2.4367 0.0050 10 6 2.0085 -3.6519 0.0104 11 6 1.3032 -4.8416 0.0153 12 6 -0.0830 -4.7934 0.0151 13 6 -0.7279 -3.5549 0.0095 14 7 -2.1197 -3.5047 0.0087 15 6 -2.7512 -2.3185 0.1109 16 8 -2.1109 -1.2886 0.1094 17 6 -4.2530 -2.2719 0.2271 18 1 -4.7035 -2.7408 -0.6477 19 6 -4.7182 -0.8144 0.3284 20 6 -6.2401 -0.7844 0.2031 21 6 -6.8701 -1.7610 1.1614 22 6 -8.2197 -1.6040 1.4510 23 6 -8.8561 -2.4689 2.3167 24 6 -8.1460 -3.5013 2.9011 25 6 -6.8054 -3.6576 2.6165 26 6 -6.1620 -2.7860 1.7471 27 6 -4.6942 -3.0073 1.4910 28 7 -0.0357 -2.4317 0.0100 29 1 -0.4850 0.8400 0.0004 30 1 3.0884 -3.6561 0.0100 31 1 1.8214 -5.7891 0.0191 32 1 -0.6591 -5.7068 0.0183 33 1 -2.6344 -4.3234 -0.0654 34 1 -4.4210 -0.4004 1.2920 35 1 -4.2715 -0.2298 -0.4757 36 1 -6.5993 0.2203 0.4259 37 1 -6.5220 -1.0484 -0.8162 38 1 -8.7750 -0.7978 0.9949 39 1 -9.9054 -2.3401 2.5372 40 1 -8.6394 -4.1832 3.5780 41 1 -6.2516 -4.4646 3.0731 42 1 -4.5071 -4.0742 1.3700 43 1 -4.1214 -2.6366 2.3411 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882471321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:54 Heat of formation + Delta-G solvation = 31.580267 kcal Electronic energy + Delta-G solvation = -26409.081065 eV Core-core repulsion = 22804.957725 eV Total energy + Delta-G solvation = -3604.123340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.32193 -39.09458 -37.59735 -35.52185 -34.09141 -33.05130 -32.56693 -30.48095 -30.21805 -29.28953 -28.49779 -25.57125 -24.26945 -23.20404 -22.21840 -21.77457 -21.11738 -19.75727 -18.87867 -17.71195 -16.57964 -16.24471 -16.06301 -15.66322 -14.84304 -14.68859 -14.44107 -14.35464 -14.01818 -13.87016 -13.63532 -13.42082 -13.14637 -12.88108 -12.78270 -12.57565 -12.07889 -11.89405 -11.87420 -11.44611 -11.40784 -11.14486 -10.93595 -10.85647 -10.69555 -10.61840 -10.46564 -10.32895 -9.90220 -9.65257 -9.00507 -8.86606 -8.83207 -8.60156 -7.95187 -7.18631 -6.94246 -6.12746 -4.38684 1.28918 1.29550 2.78737 3.07873 3.18436 3.21819 3.27333 3.66235 3.73894 3.87913 4.07364 4.59283 4.66690 4.87292 4.91717 4.92671 5.00050 5.13307 5.16003 5.29715 5.42540 5.52707 5.54661 5.69624 5.75922 5.88555 5.92751 6.00421 6.05826 6.06602 6.14156 6.27961 6.41957 6.45915 6.49146 6.50714 6.63332 6.71695 6.85434 6.86719 6.94759 7.25348 7.57030 7.64760 7.82690 8.09275 8.22040 8.49433 8.76008 9.06615 9.30746 10.26338 10.49373 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.003481 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.185134 B = 8041.068544 C = 9436.213613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.655 5.655 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.270 3.730 10 C -0.306 4.306 11 C -0.037 4.037 12 C -0.358 4.358 13 C 0.372 3.628 14 N -0.667 5.667 15 C 0.474 3.526 16 O -0.406 6.406 17 C -0.104 4.104 18 H 0.090 0.910 19 C -0.097 4.097 20 C -0.082 4.082 21 C -0.073 4.073 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.126 4.126 25 C -0.120 4.120 26 C -0.069 4.069 27 C -0.071 4.071 28 N -0.474 5.474 29 H 0.271 0.729 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.397 0.603 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.077 0.923 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.439 -3.622 2.460 17.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.274 5.274 2 C -0.171 4.171 3 Si 0.720 3.280 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.145 3.855 10 C -0.329 4.329 11 C -0.061 4.061 12 C -0.384 4.384 13 C 0.134 3.866 14 N -0.314 5.314 15 C 0.256 3.744 16 O -0.269 6.269 17 C -0.126 4.126 18 H 0.108 0.892 19 C -0.135 4.135 20 C -0.119 4.119 21 C -0.073 4.073 22 C -0.140 4.140 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.138 4.138 26 C -0.069 4.069 27 C -0.108 4.108 28 N -0.193 5.193 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.231 0.769 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.096 0.904 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.622 -1.804 2.483 16.903 hybrid contribution 0.409 -0.800 0.045 0.900 sum -16.213 -2.604 2.528 16.615 Atomic orbital electron populations 1.70333 1.05728 1.27252 1.24045 1.26175 0.95135 1.00561 0.95246 0.86471 0.80920 0.82285 0.78363 1.18637 1.20072 1.20070 1.19611 0.94068 0.89367 1.42523 0.89966 1.18408 0.87233 0.91960 0.87876 1.21625 0.98535 0.93559 1.19150 1.20562 0.93224 0.96503 0.95831 1.20500 0.94793 0.94999 1.28084 1.18640 0.83439 0.90872 0.93693 1.43468 1.05004 1.09245 1.73674 1.20640 0.88916 0.84920 0.79969 1.91142 1.65193 1.30860 1.39659 1.21357 0.93944 0.98393 0.98938 0.89228 1.21340 0.93317 0.94835 1.04026 1.20543 0.95767 0.97651 0.97894 1.19719 0.93593 0.96018 0.97963 1.21158 0.94256 0.99723 0.98876 1.21030 0.99693 0.95779 0.97951 1.21031 0.94497 0.98466 1.00381 1.21177 0.94840 0.99425 0.98329 1.19631 0.95506 0.94928 0.96838 1.20434 0.91714 1.00684 0.98011 1.68714 1.06967 1.23248 1.20348 0.91687 0.88617 0.88690 0.89167 0.76931 0.91030 0.90032 0.90591 0.90614 0.86320 0.86388 0.86320 0.86135 0.90415 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.05 8.99 55.55 0.50 -17.55 16 2 C 0.06 1.52 5.50 -17.35 -0.10 1.43 16 3 Si 0.90 19.28 29.56 -169.99 -5.02 14.26 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.43 -11.73 9.14 -37.73 -0.34 -12.08 16 8 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 9 C 0.27 7.63 6.55 -84.99 -0.56 7.08 16 10 C -0.31 -7.75 9.83 -38.66 -0.38 -8.13 16 11 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 12 C -0.36 -8.06 9.95 -38.89 -0.39 -8.45 16 13 C 0.37 9.05 7.43 -154.97 -1.15 7.90 16 14 N -0.67 -12.94 5.29 -11.40 -0.06 -13.00 16 15 C 0.47 9.27 7.09 -10.99 -0.08 9.19 16 16 O -0.41 -9.92 11.63 5.56 0.06 -9.85 16 17 C -0.10 -1.48 2.55 -91.74 -0.23 -1.71 16 18 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 19 C -0.10 -1.35 4.71 -26.70 -0.13 -1.48 16 20 C -0.08 -0.90 5.67 -28.05 -0.16 -1.06 16 21 C -0.07 -0.84 5.74 -104.61 -0.60 -1.44 16 22 C -0.12 -1.25 9.61 -39.44 -0.38 -1.63 16 23 C -0.13 -1.21 10.05 -39.68 -0.40 -1.61 16 24 C -0.13 -1.23 10.05 -39.68 -0.40 -1.63 16 25 C -0.12 -1.29 9.61 -39.44 -0.38 -1.67 16 26 C -0.07 -0.82 5.74 -104.62 -0.60 -1.42 16 27 C -0.07 -0.89 4.89 -28.05 -0.14 -1.03 16 28 N -0.47 -13.29 5.74 -10.25 -0.06 -13.35 16 29 H 0.27 6.98 8.29 -40.82 -0.34 6.65 16 30 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 31 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.40 5.99 8.60 -40.82 -0.35 5.63 16 34 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 35 H 0.08 1.24 7.82 -51.93 -0.41 0.83 16 36 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.12 0.99 8.05 -52.49 -0.42 0.57 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.12 1.12 8.05 -52.48 -0.42 0.69 16 42 H 0.08 0.85 8.02 -51.93 -0.42 0.43 16 43 H 0.08 1.16 8.11 -51.93 -0.42 0.74 16 LS Contribution 354.32 15.07 5.34 5.34 Total: -1.00 -32.59 354.32 -11.83 -44.42 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.79 Total: 8.74 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -6.80 Total: -19.00 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.38 Total: -43.90 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.06 Total: -9.85 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.59 -11.83 -44.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.001 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds