Wall clock time and date at job start Tue Mar 31 2020 13:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86802 * 120.00523 * 2 1 4 4 H 1.48501 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46845 * 300.00231 * 3 2 1 6 6 H 1.48493 * 109.46823 * 59.99730 * 3 2 1 7 7 C 1.40029 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00244 * 179.97438 * 7 2 1 9 9 C 1.41340 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.40619 * 119.78746 * 179.97438 * 9 7 2 11 11 C 1.38298 * 119.12779 * 179.97438 * 10 9 7 12 12 C 1.38694 * 118.66853 * 0.02562 * 11 10 9 13 13 C 1.39628 * 119.49962 * 0.02562 * 12 11 10 14 14 N 1.39272 * 119.57743 * 180.02562 * 13 12 11 15 15 C 1.34772 * 120.00170 * 185.34027 * 14 13 12 16 16 O 1.21279 * 120.00148 * 354.85491 * 15 14 13 17 17 C 1.50699 * 120.00184 * 174.85920 * 15 14 13 18 18 H 1.09008 * 109.47038 * 299.99902 * 17 15 14 19 19 C 1.50700 * 109.47261 * 180.02562 * 17 15 14 20 20 C 1.38234 * 120.00014 * 119.99959 * 19 17 15 21 21 C 1.38237 * 119.99888 * 179.97438 * 20 19 17 22 22 C 1.38230 * 120.00362 * 359.97438 * 21 20 19 23 23 C 1.38242 * 119.99599 * 0.27289 * 22 21 20 24 24 C 1.38231 * 120.00060 * 359.53564 * 23 22 21 25 25 C 1.53002 * 109.47216 * 59.99814 * 17 15 14 26 26 C 1.53004 * 117.49806 * 248.62258 * 25 17 15 27 27 C 1.53000 * 60.00153 * 252.51148 * 26 25 17 28 28 N 1.31929 * 120.85233 * 0.27183 * 13 12 11 29 29 H 0.97001 * 119.99283 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.43258 * 359.97438 * 10 9 7 31 31 H 1.07996 * 120.66729 * 179.97438 * 11 10 9 32 32 H 1.08004 * 120.24975 * 180.02562 * 12 11 10 33 33 H 0.97001 * 119.99828 * 5.33847 * 14 13 12 34 34 H 1.08002 * 120.00242 * 0.02562 * 20 19 17 35 35 H 1.08005 * 119.99993 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.00302 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.99947 * 179.73040 * 23 22 21 38 38 H 1.07996 * 120.00390 * 180.23243 * 24 23 22 39 39 H 1.08993 * 115.55102 * 34.33354 * 25 17 15 40 40 H 1.09001 * 117.50208 * 0.02562 * 26 25 17 41 41 H 1.08999 * 117.49653 * 145.01653 * 26 25 17 42 42 H 1.08999 * 117.49792 * 252.51297 * 27 26 25 43 43 H 1.08996 * 117.52247 * 107.47962 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7016 1.3462 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8828 2.3963 1.2124 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2129 0.0001 9 6 1.3007 -2.4367 0.0005 10 6 2.0082 -3.6520 0.0005 11 6 1.3029 -4.8416 0.0011 12 6 -0.0832 -4.7933 0.0011 13 6 -0.7280 -3.5548 0.0000 14 7 -2.1198 -3.5045 0.0005 15 6 -2.7513 -2.3189 -0.1092 16 8 -2.1110 -1.2890 -0.1144 17 6 -4.2531 -2.2730 -0.2253 18 1 -4.5657 -2.8211 -1.1142 19 6 -4.7049 -0.8395 -0.3349 20 6 -5.4032 -0.4183 -1.4511 21 6 -5.8180 0.8965 -1.5514 22 6 -5.5351 1.7901 -0.5354 23 6 -4.8323 1.3701 0.5785 24 6 -4.4209 0.0544 0.6806 25 6 -4.8803 -2.9125 1.0151 26 6 -5.6111 -4.2440 0.8304 27 6 -6.4078 -2.9634 1.0878 28 7 -0.0359 -2.4317 -0.0064 29 1 -0.4849 0.8401 -0.0004 30 1 3.0882 -3.6562 0.0001 31 1 1.8211 -5.7891 0.0007 32 1 -0.6594 -5.7068 0.0019 33 1 -2.6347 -4.3227 0.0798 34 1 -5.6254 -1.1166 -2.2445 35 1 -6.3633 1.2257 -2.4237 36 1 -5.8596 2.8172 -0.6136 37 1 -4.6074 2.0692 1.3704 38 1 -3.8751 -0.2747 1.5525 39 1 -4.3369 -2.7614 1.9477 40 1 -5.6447 -4.6646 -0.1746 41 1 -5.5483 -4.9693 1.6417 42 1 -6.8691 -2.8462 2.0684 43 1 -6.9658 -2.5408 0.2523 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882472873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:47 Heat of formation + Delta-G solvation = 57.354784 kcal Electronic energy + Delta-G solvation = -26968.130514 eV Core-core repulsion = 23365.124841 eV Total energy + Delta-G solvation = -3603.005673 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.42008 -40.17286 -38.98008 -37.91006 -35.89475 -34.79645 -33.13625 -32.19953 -31.70211 -31.02500 -28.68693 -27.34280 -24.11496 -23.60375 -23.33710 -23.00543 -22.64476 -21.75207 -20.48489 -19.54880 -18.03986 -17.93383 -17.55352 -16.51030 -16.33955 -16.26343 -16.08399 -15.75517 -15.48453 -15.42151 -14.78266 -14.71420 -14.38889 -14.19837 -13.90516 -13.74041 -13.59693 -13.31657 -12.93096 -12.73099 -12.54873 -12.52424 -12.31927 -12.28595 -12.04126 -11.78270 -11.75204 -11.46811 -11.38995 -10.97185 -10.84316 -10.44494 -9.88143 -9.71163 -9.54019 -9.04095 -8.78376 -8.04328 -6.41074 0.50952 0.60978 0.92975 1.25986 1.37497 1.49443 1.51796 2.16996 2.25003 2.36771 2.86118 2.99097 3.02682 3.64294 3.83689 3.94723 4.03229 4.07368 4.19892 4.23085 4.23339 4.33751 4.36709 4.44398 4.62216 4.71211 4.77136 4.85101 4.86049 4.91272 4.96632 5.06632 5.08986 5.16385 5.21724 5.26315 5.30194 5.33280 5.62170 5.68554 5.69695 5.79903 5.88827 5.93919 6.15871 6.20291 6.39301 6.76893 6.87270 7.09843 7.75259 8.36593 8.56711 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010696 B = 0.005377 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.230125 B = 5206.362058 C = 7416.112256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.684 5.684 2 C 0.012 3.988 3 Si 0.969 3.031 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.466 4.466 8 H 0.083 0.917 9 C 0.237 3.763 10 C -0.331 4.331 11 C -0.035 4.035 12 C -0.347 4.347 13 C 0.350 3.650 14 N -0.652 5.652 15 C 0.467 3.533 16 O -0.446 6.446 17 C -0.020 4.020 18 H 0.116 0.884 19 C -0.065 4.065 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.137 4.137 24 C -0.094 4.094 25 C -0.162 4.162 26 C -0.158 4.158 27 C -0.159 4.159 28 N -0.506 5.506 29 H 0.268 0.732 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.418 0.582 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.321 -3.005 -0.560 16.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.303 5.303 2 C -0.213 4.213 3 Si 0.791 3.209 4 H -0.177 1.177 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.497 4.497 8 H 0.102 0.898 9 C 0.112 3.888 10 C -0.354 4.354 11 C -0.059 4.059 12 C -0.372 4.372 13 C 0.111 3.889 14 N -0.301 5.301 15 C 0.251 3.749 16 O -0.312 6.312 17 C -0.042 4.042 18 H 0.134 0.866 19 C -0.065 4.065 20 C -0.141 4.141 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.155 4.155 24 C -0.112 4.112 25 C -0.181 4.181 26 C -0.195 4.195 27 C -0.196 4.196 28 N -0.225 5.225 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.255 0.745 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.142 0.858 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.118 0.882 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.537 -1.250 -0.589 16.595 hybrid contribution 1.120 -0.454 0.303 1.246 sum -15.418 -1.704 -0.286 15.514 Atomic orbital electron populations 1.70524 1.07042 1.27670 1.25031 1.26980 0.96017 1.03754 0.94576 0.85350 0.79726 0.77510 0.78338 1.17715 1.19713 1.19622 1.19892 0.94335 0.90479 1.44979 0.89845 1.18880 0.88075 0.93303 0.88591 1.21794 0.99117 0.93917 1.20579 1.21020 0.93610 0.97261 0.93999 1.20974 0.95147 0.95800 1.25280 1.19182 0.85319 0.91027 0.93374 1.43379 1.03352 1.10495 1.72890 1.21390 0.90603 0.84255 0.78687 1.91165 1.66567 1.32323 1.41100 1.19848 0.89768 0.94486 1.00090 0.86569 1.19353 0.98185 0.94049 0.94963 1.21250 0.98756 0.97186 0.96915 1.21375 1.00559 0.93122 0.99443 1.21384 0.98751 1.00596 0.93772 1.21287 0.99228 0.95558 0.99428 1.20825 0.97681 0.94207 0.98519 1.21895 0.96047 1.03211 0.96933 1.23225 1.01732 0.90095 1.04435 1.22945 0.91583 1.01350 1.03699 1.68684 1.07183 1.25341 1.21329 0.92143 0.87962 0.84651 0.85145 0.74459 0.84435 0.83588 0.84074 0.85796 0.89063 0.89528 0.86970 0.87404 0.88210 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -40.00 9.00 21.84 0.20 -39.80 16 2 C 0.01 0.69 5.50 85.29 0.47 1.16 16 3 Si 0.97 41.78 29.56 68.60 2.03 43.81 16 4 H -0.25 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.47 -27.08 9.14 23.47 0.21 -26.86 16 8 H 0.08 4.57 7.85 -2.91 -0.02 4.55 16 9 C 0.24 13.95 6.55 40.21 0.26 14.21 16 10 C -0.33 -17.07 9.83 22.87 0.22 -16.85 16 11 C -0.03 -1.54 10.15 22.39 0.23 -1.31 16 12 C -0.35 -15.02 9.95 22.71 0.23 -14.79 16 13 C 0.35 17.16 7.43 133.23 0.99 18.15 16 14 N -0.65 -25.45 5.31 -308.38 -1.64 -27.09 16 15 C 0.47 18.97 6.96 87.66 0.61 19.58 16 16 O -0.45 -23.05 10.88 -3.03 -0.03 -23.08 16 17 C -0.02 -0.59 2.54 -12.29 -0.03 -0.62 16 18 H 0.12 2.75 7.63 -2.38 -0.02 2.73 16 19 C -0.07 -1.99 4.05 -19.87 -0.08 -2.07 16 20 C -0.12 -3.21 9.67 22.27 0.22 -3.00 16 21 C -0.13 -3.03 10.05 22.27 0.22 -2.80 16 22 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16 23 C -0.14 -4.08 10.05 22.27 0.22 -3.85 16 24 C -0.09 -3.19 8.04 22.27 0.18 -3.01 16 25 C -0.16 -3.80 4.54 -10.79 -0.05 -3.85 16 26 C -0.16 -2.55 10.18 30.60 0.31 -2.24 16 27 C -0.16 -2.84 9.87 30.60 0.30 -2.54 16 28 N -0.51 -29.40 5.74 -186.35 -1.07 -30.47 16 29 H 0.27 14.92 8.29 -92.71 -0.77 14.15 16 30 H 0.10 4.94 8.06 -2.91 -0.02 4.91 16 31 H 0.14 4.81 8.06 -2.91 -0.02 4.78 16 32 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 33 H 0.42 12.26 8.52 -92.71 -0.79 11.47 16 34 H 0.14 2.87 7.95 -2.91 -0.02 2.85 16 35 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 36 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 37 H 0.12 3.32 8.06 -2.91 -0.02 3.30 16 38 H 0.09 3.48 7.99 -2.91 -0.02 3.46 16 39 H 0.09 2.41 8.11 -2.39 -0.02 2.39 16 40 H 0.11 1.48 8.05 -2.39 -0.02 1.46 16 41 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -75.26 363.50 4.46 -70.79 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: 0.24 Total: 39.51 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: 4.74 Total: -33.67 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -2.51 Total: -97.36 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.03 Total: -23.08 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -75.26 4.46 -70.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.146 kcal (2) G-P(sol) polarization free energy of solvation -75.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds