Wall clock time and date at job start Tue Mar 31 2020 13:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86792 * 120.00296 * 2 1 4 4 H 1.48493 * 109.47520 * 270.00183 * 3 2 1 5 5 H 1.48504 * 109.46900 * 30.00073 * 3 2 1 6 6 H 1.48501 * 109.47082 * 149.99896 * 3 2 1 7 7 C 1.40029 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99850 * 186.91086 * 7 2 1 9 9 C 1.41336 * 120.00276 * 6.91990 * 7 2 1 10 10 C 1.40612 * 119.79191 * 186.90592 * 9 7 2 11 11 C 1.38304 * 119.13321 * 180.02562 * 10 9 7 12 12 C 1.38702 * 118.66433 * 359.97334 * 11 10 9 13 13 C 1.39620 * 119.49944 * 0.02562 * 12 11 10 14 14 N 1.39275 * 119.57815 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99709 * 338.63112 * 14 13 12 16 16 O 1.21274 * 119.99978 * 3.75590 * 15 14 13 17 17 C 1.50702 * 120.00072 * 183.75223 * 15 14 13 18 18 C 1.53004 * 115.55107 * 298.09393 * 17 15 14 19 19 C 1.50702 * 109.46947 * 293.64600 * 18 17 15 20 20 C 1.38236 * 119.99898 * 276.84891 * 19 18 17 21 21 C 1.38232 * 119.99429 * 179.79010 * 20 19 18 22 22 C 1.38232 * 120.00352 * 0.44199 * 21 20 19 23 23 C 1.38241 * 119.99987 * 359.81400 * 22 21 20 24 24 C 1.38227 * 119.99637 * 359.97438 * 23 22 21 25 25 C 1.53003 * 117.49771 * 152.42504 * 17 15 14 26 26 C 1.53004 * 117.49678 * 83.76649 * 17 15 14 27 27 N 1.31937 * 120.85331 * 0.02562 * 13 12 11 28 28 H 0.97003 * 120.00086 * 354.99848 * 1 2 3 29 29 H 1.08000 * 120.43162 * 359.97438 * 10 9 7 30 30 H 1.07996 * 120.67043 * 179.97438 * 11 10 9 31 31 H 1.08004 * 120.24690 * 180.27324 * 12 11 10 32 32 H 0.97002 * 120.00435 * 158.62661 * 14 13 12 33 33 H 1.09003 * 109.46988 * 53.64461 * 18 17 15 34 34 H 1.08999 * 109.46942 * 173.64812 * 18 17 15 35 35 H 1.08000 * 119.99725 * 0.02562 * 20 19 18 36 36 H 1.08005 * 119.99490 * 180.27294 * 21 20 19 37 37 H 1.07997 * 119.99891 * 179.83034 * 22 21 20 38 38 H 1.07997 * 119.99705 * 179.97438 * 23 22 21 39 39 H 1.08004 * 119.99878 * 180.02562 * 24 23 22 40 40 H 1.08995 * 117.50128 * 0.02562 * 25 17 15 41 41 H 1.09004 * 117.49627 * 145.02271 * 25 17 15 42 42 H 1.08995 * 117.49601 * 214.98040 * 26 17 15 43 43 H 1.08992 * 117.49851 * 359.97355 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4389 2.6526 0.7001 6 1 3.5390 1.4400 0.7001 7 6 2.0075 -1.2127 0.0005 8 1 3.0816 -1.2161 0.1131 9 6 1.3086 -2.4323 -0.1464 10 6 1.9931 -3.6519 -0.0001 11 6 1.2958 -4.8372 -0.1472 12 6 -0.0599 -4.7804 -0.4346 13 6 -0.6830 -3.5380 -0.5678 14 7 -2.0441 -3.4790 -0.8569 15 6 -2.6595 -4.5368 -1.4215 16 8 -2.0443 -5.5638 -1.6154 17 6 -4.1121 -4.4434 -1.8119 18 6 -5.0896 -4.1916 -0.6620 19 6 -5.1043 -5.3870 0.2555 20 6 -5.8927 -6.4813 -0.0476 21 6 -5.9029 -7.5795 0.7918 22 6 -5.1318 -7.5798 1.9391 23 6 -4.3474 -6.4833 2.2450 24 6 -4.3339 -5.3869 1.4033 25 6 -4.5915 -5.3258 -2.9662 26 6 -4.4401 -3.8160 -3.1682 27 7 0.0013 -2.4191 -0.4245 28 1 -0.4850 0.8369 0.0732 29 1 3.0496 -3.6628 0.2234 30 1 1.7968 -5.7879 -0.0405 31 1 -0.6301 -5.6903 -0.5504 32 1 -2.5492 -2.6767 -0.6518 33 1 -4.7751 -3.3094 -0.1044 34 1 -6.0897 -4.0299 -1.0642 35 1 -6.4977 -6.4797 -0.9423 36 1 -6.5155 -8.4363 0.5527 37 1 -5.1419 -8.4367 2.5963 38 1 -3.7453 -6.4834 3.1415 39 1 -3.7208 -4.5304 1.6420 40 1 -3.8564 -5.9741 -3.4430 41 1 -5.6034 -5.7266 -2.9067 42 1 -5.3525 -3.2242 -3.2415 43 1 -3.6054 -3.4704 -3.7780 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882474295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:29 Heat of formation + Delta-G solvation = 39.745974 kcal Electronic energy + Delta-G solvation = -26453.581998 eV Core-core repulsion = 22849.812750 eV Total energy + Delta-G solvation = -3603.769248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.78438 -40.27802 -39.56707 -37.76420 -36.02559 -35.10202 -33.21485 -32.36442 -31.75464 -31.16951 -28.28776 -27.50031 -25.37119 -23.60145 -23.53856 -23.23566 -22.80040 -22.22518 -20.56459 -19.30040 -18.56658 -17.89694 -17.41227 -16.78012 -16.55599 -16.44526 -16.19507 -16.05137 -15.74480 -15.47269 -14.97667 -14.73109 -14.27964 -14.19467 -14.05838 -13.95296 -13.79195 -13.23267 -13.18193 -12.93042 -12.85244 -12.67056 -12.61215 -12.41275 -12.23304 -11.88860 -11.85109 -11.60025 -11.40259 -11.04579 -11.03197 -10.47384 -10.01941 -9.79335 -9.67769 -9.57991 -9.03229 -8.35552 -6.52637 0.45903 0.52526 0.70499 1.05478 1.41788 1.51015 1.55371 1.70621 2.01465 2.23168 2.68794 2.84016 2.93191 3.55105 3.66621 3.81519 3.88162 3.92745 4.03593 4.15436 4.19418 4.29161 4.32610 4.53694 4.61088 4.64997 4.74395 4.76895 4.83878 4.85526 4.87791 4.93903 4.95412 5.00806 5.17565 5.20482 5.22549 5.23349 5.58770 5.59428 5.64028 5.64328 5.72508 5.90325 6.04915 6.15855 6.24085 6.49695 6.75512 6.91458 7.20986 8.06148 8.43028 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015626 B = 0.003481 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.447513 B = 8042.437201 C = 8415.336604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.030 3.970 3 Si 0.989 3.011 4 H -0.266 1.266 5 H -0.265 1.265 6 H -0.256 1.256 7 C -0.468 4.468 8 H 0.091 0.909 9 C 0.247 3.753 10 C -0.307 4.307 11 C -0.051 4.051 12 C -0.330 4.330 13 C 0.348 3.652 14 N -0.638 5.638 15 C 0.549 3.451 16 O -0.553 6.553 17 C -0.163 4.163 18 C -0.033 4.033 19 C -0.089 4.089 20 C -0.113 4.113 21 C -0.125 4.125 22 C -0.132 4.132 23 C -0.137 4.137 24 C -0.137 4.137 25 C -0.132 4.132 26 C -0.140 4.140 27 N -0.533 5.533 28 H 0.281 0.719 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.413 0.587 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.139 0.861 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.211 -6.274 -1.407 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.192 4.192 3 Si 0.809 3.191 4 H -0.191 1.191 5 H -0.189 1.189 6 H -0.180 1.180 7 C -0.499 4.499 8 H 0.109 0.891 9 C 0.120 3.880 10 C -0.329 4.329 11 C -0.075 4.075 12 C -0.354 4.354 13 C 0.112 3.888 14 N -0.282 5.282 15 C 0.338 3.662 16 O -0.431 6.431 17 C -0.166 4.166 18 C -0.070 4.070 19 C -0.089 4.089 20 C -0.131 4.131 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.155 4.155 24 C -0.155 4.155 25 C -0.169 4.169 26 C -0.177 4.177 27 N -0.252 5.252 28 H 0.092 0.908 29 H 0.131 0.869 30 H 0.146 0.854 31 H 0.151 0.849 32 H 0.250 0.750 33 H 0.094 0.906 34 H 0.141 0.859 35 H 0.167 0.833 36 H 0.166 0.834 37 H 0.157 0.843 38 H 0.139 0.861 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.156 0.844 42 H 0.161 0.839 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.420 -6.074 -1.702 17.590 hybrid contribution 1.345 0.199 0.570 1.474 sum -15.075 -5.875 -1.132 16.219 Atomic orbital electron populations 1.70115 1.08858 1.29502 1.29227 1.26932 0.95760 1.04333 0.92193 0.85120 0.79079 0.75644 0.79267 1.19131 1.18917 1.17997 1.19939 0.95438 0.90300 1.44266 0.89056 1.18684 0.87263 0.93380 0.88627 1.21903 1.00455 0.93428 1.17130 1.21181 0.93816 0.97644 0.94871 1.21966 0.96626 0.97803 1.19043 1.18866 0.85344 0.90657 0.93889 1.43190 1.06870 1.18490 1.59636 1.20332 0.88846 0.81730 0.75279 1.90535 1.67054 1.30940 1.54562 1.21313 0.89572 1.12388 0.93302 1.20160 0.99321 0.95149 0.92400 1.19961 0.97012 0.97115 0.94856 1.21324 0.99005 0.92623 1.00132 1.21506 0.99297 0.99036 0.94410 1.21423 0.96941 0.98281 0.98359 1.21325 0.99779 0.94339 1.00069 1.21172 0.99380 0.98875 0.96063 1.23116 1.03606 0.93461 0.96731 1.23288 1.04445 0.96706 0.93236 1.68035 1.08906 1.26048 1.22242 0.90799 0.86870 0.85434 0.84870 0.75030 0.90618 0.85878 0.83307 0.83392 0.84309 0.86147 0.88309 0.89985 0.84416 0.83874 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -39.58 11.55 21.84 0.25 -39.33 16 2 C 0.03 1.51 5.47 85.29 0.47 1.98 16 3 Si 0.99 37.67 29.57 68.60 2.03 39.70 16 4 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 6 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 7 C -0.47 -25.62 9.13 23.47 0.21 -25.41 16 8 H 0.09 4.68 7.86 -2.91 -0.02 4.65 16 9 C 0.25 14.15 6.52 40.21 0.26 14.41 16 10 C -0.31 -16.05 9.83 22.87 0.22 -15.83 16 11 C -0.05 -2.51 10.15 22.40 0.23 -2.28 16 12 C -0.33 -17.05 8.88 22.71 0.20 -16.85 16 13 C 0.35 18.08 7.50 133.23 1.00 19.08 16 14 N -0.64 -26.90 5.41 -308.38 -1.67 -28.57 16 15 C 0.55 20.83 6.69 87.66 0.59 21.42 16 16 O -0.55 -25.11 13.29 -3.01 -0.04 -25.15 16 17 C -0.16 -4.12 1.88 -52.92 -0.10 -4.22 16 18 C -0.03 -0.69 5.22 29.85 0.16 -0.53 16 19 C -0.09 -2.19 4.86 -19.86 -0.10 -2.29 16 20 C -0.11 -2.28 9.72 22.27 0.22 -2.06 16 21 C -0.12 -2.46 10.05 22.27 0.22 -2.23 16 22 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 23 C -0.14 -3.71 10.05 22.27 0.22 -3.49 16 24 C -0.14 -4.02 9.66 22.27 0.22 -3.80 16 25 C -0.13 -2.71 9.76 30.62 0.30 -2.42 16 26 C -0.14 -2.76 9.92 30.62 0.30 -2.46 16 27 N -0.53 -30.24 7.99 -186.36 -1.49 -31.73 16 28 H 0.28 13.18 8.30 -92.71 -0.77 12.41 16 29 H 0.11 5.41 8.06 -2.91 -0.02 5.38 16 30 H 0.13 5.36 8.06 -2.91 -0.02 5.34 16 31 H 0.13 6.92 5.21 -7.40 -0.04 6.88 16 32 H 0.41 15.90 8.74 -92.71 -0.81 15.09 16 33 H 0.08 1.65 7.95 -2.39 -0.02 1.63 16 34 H 0.12 1.60 8.07 -2.39 -0.02 1.59 16 35 H 0.15 2.02 7.63 -2.91 -0.02 1.99 16 36 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 38 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 39 H 0.10 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.08 2.09 7.93 -2.39 -0.02 2.07 16 41 H 0.14 1.81 7.71 -2.39 -0.02 1.79 16 42 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -72.63 368.50 4.13 -68.50 By element: Atomic # 1 Polarization: 46.08 SS G_CDS: 0.20 Total: 46.28 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 4.85 Total: -29.70 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -2.91 Total: -99.63 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.04 Total: -25.15 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Total: -72.63 4.13 -68.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.245 kcal (2) G-P(sol) polarization free energy of solvation -72.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds