Wall clock time and date at job start Tue Mar 31 2020 13:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86805 * 120.00293 * 2 1 4 4 H 1.48495 * 109.47010 * 90.00071 * 3 2 1 5 5 H 1.48503 * 109.46918 * 210.00115 * 3 2 1 6 6 H 1.48499 * 109.46762 * 329.99931 * 3 2 1 7 7 C 1.40030 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00428 * 180.02562 * 7 2 1 9 9 C 1.41339 * 119.99580 * 359.97438 * 7 2 1 10 10 C 1.40621 * 119.78847 * 179.97438 * 9 7 2 11 11 C 1.38296 * 119.13021 * 179.97438 * 10 9 7 12 12 C 1.38706 * 118.66899 * 0.02562 * 11 10 9 13 13 C 1.39630 * 119.49550 * 359.97438 * 12 11 10 14 14 N 1.39275 * 119.57348 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99820 * 174.46051 * 14 13 12 16 16 O 1.21272 * 120.00227 * 4.96148 * 15 14 13 17 17 C 1.50701 * 119.99393 * 184.97146 * 15 14 13 18 18 C 1.53004 * 109.46438 * 184.61716 * 17 15 14 19 19 H 1.08998 * 110.27492 * 56.02194 * 18 17 15 20 20 C 1.54344 * 110.30369 * 293.93880 * 18 17 15 21 21 C 1.54343 * 102.39422 * 214.73446 * 20 18 17 22 22 C 1.51365 * 105.17271 * 26.34844 * 21 20 18 23 23 C 1.38498 * 130.39441 * 162.81275 * 22 21 20 24 24 C 1.38105 * 120.21214 * 180.02562 * 23 22 21 25 25 C 1.38252 * 119.93984 * 359.97438 * 24 23 22 26 26 C 1.38099 * 119.93387 * 0.02562 * 25 24 23 27 27 C 1.38222 * 109.75805 * 342.81219 * 22 21 20 28 28 N 1.31928 * 120.85152 * 359.74551 * 13 12 11 29 29 H 0.97004 * 119.99679 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.42941 * 0.02562 * 10 9 7 31 31 H 1.08003 * 120.66960 * 179.97438 * 11 10 9 32 32 H 1.08003 * 120.25104 * 179.97438 * 12 11 10 33 33 H 0.96997 * 119.99926 * 354.45256 * 14 13 12 34 34 H 1.08996 * 109.47094 * 304.60952 * 17 15 14 35 35 H 1.08996 * 109.47811 * 64.61470 * 17 15 14 36 36 H 1.09006 * 110.82495 * 332.96178 * 20 18 17 37 37 H 1.08996 * 110.82291 * 96.50672 * 20 18 17 38 38 H 1.08998 * 110.30572 * 145.27729 * 21 20 18 39 39 H 1.09006 * 110.30407 * 267.42529 * 21 20 18 40 40 H 1.07995 * 119.89258 * 359.97438 * 23 22 21 41 41 H 1.08004 * 120.02802 * 180.02562 * 24 23 22 42 42 H 1.08000 * 120.03588 * 179.97438 * 25 24 23 43 43 H 1.07996 * 119.89294 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 1.4000 5 1 3.5390 1.4401 -0.7001 6 1 1.4389 2.6526 -0.7001 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0001 9 6 1.3008 -2.4367 -0.0005 10 6 2.0083 -3.6519 -0.0016 11 6 1.3030 -4.8415 -0.0011 12 6 -0.0832 -4.7933 0.0000 13 6 -0.7280 -3.5548 0.0010 14 7 -2.1198 -3.5045 0.0027 15 6 -2.7511 -2.3192 0.1163 16 8 -2.1106 -1.2895 0.1266 17 6 -4.2531 -2.2735 0.2309 18 6 -4.7203 -0.8166 0.2310 19 1 -4.3584 -0.3038 -0.6602 20 6 -4.2248 -0.0953 1.5024 21 6 -5.3873 0.8727 1.8084 22 6 -6.6142 0.2211 1.2073 23 6 -7.9594 0.4587 1.4352 24 6 -8.9182 -0.2712 0.7605 25 6 -8.5349 -1.2421 -0.1461 26 6 -7.1940 -1.4805 -0.3748 27 6 -6.2310 -0.7495 0.3009 28 7 -0.0358 -2.4317 0.0060 29 1 -0.4850 0.8401 0.0004 30 1 3.0882 -3.6561 -0.0021 31 1 1.8212 -5.7892 -0.0023 32 1 -0.6594 -5.7068 0.0000 33 1 -2.6348 -4.3225 -0.0781 34 1 -4.6981 -2.7977 -0.6148 35 1 -4.5615 -2.7541 1.1593 36 1 -4.0845 -0.8029 2.3196 37 1 -3.3052 0.4545 1.3024 38 1 -5.5098 0.9883 2.8853 39 1 -5.2062 1.8410 1.3416 40 1 -8.2596 1.2167 2.1435 41 1 -9.9664 -0.0832 0.9402 42 1 -9.2833 -1.8141 -0.6743 43 1 -6.8953 -2.2393 -1.0828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882475355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:52 Heat of formation + Delta-G solvation = 39.634378 kcal Electronic energy + Delta-G solvation = -26386.309373 eV Core-core repulsion = 22782.535286 eV Total energy + Delta-G solvation = -3603.774087 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.33387 -39.10405 -37.51596 -35.69051 -34.03881 -32.96520 -32.17209 -30.34278 -29.98113 -28.94194 -28.53476 -25.74821 -24.97885 -22.58344 -22.01344 -21.21936 -20.90796 -20.12928 -19.06691 -17.69371 -16.67855 -16.15945 -15.85098 -15.22683 -15.00974 -14.83110 -14.61012 -14.49646 -14.41994 -13.63766 -13.30272 -13.22151 -13.02766 -12.78637 -12.61404 -12.51894 -12.04374 -11.91460 -11.64014 -11.31756 -11.12563 -11.09201 -10.94787 -10.80871 -10.64946 -10.59495 -10.53757 -10.45993 -9.92370 -9.63332 -8.99547 -8.91363 -8.80944 -8.49518 -7.94814 -7.18136 -6.93654 -6.12903 -4.38658 1.33661 1.35407 2.79812 3.08771 3.17571 3.19866 3.27694 3.71037 3.79251 3.91673 4.06942 4.45766 4.66716 4.93015 4.94232 4.96626 5.09944 5.16718 5.32428 5.38371 5.51438 5.55826 5.62601 5.68431 5.86719 5.95470 6.02792 6.06963 6.11760 6.14498 6.19501 6.36070 6.45315 6.47839 6.51248 6.65250 6.69475 6.72999 6.85559 6.87077 6.97412 7.25577 7.57323 7.65127 7.82857 8.09508 8.22306 8.49927 8.76131 9.06707 9.32381 10.26431 10.49050 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.003668 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.250179 B = 7632.107788 C = 9276.640214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.654 5.654 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.264 1.264 6 H -0.278 1.278 7 C -0.425 4.425 8 H 0.081 0.919 9 C 0.271 3.729 10 C -0.306 4.306 11 C -0.037 4.037 12 C -0.358 4.358 13 C 0.373 3.627 14 N -0.669 5.669 15 C 0.468 3.532 16 O -0.405 6.405 17 C -0.130 4.130 18 C -0.030 4.030 19 H 0.094 0.906 20 C -0.105 4.105 21 C -0.086 4.086 22 C -0.092 4.092 23 C -0.112 4.112 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.107 4.107 27 C -0.085 4.085 28 N -0.473 5.473 29 H 0.271 0.729 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.398 0.602 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.879 -0.399 1.472 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.273 5.273 2 C -0.170 4.170 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.188 1.188 6 H -0.203 1.203 7 C -0.456 4.456 8 H 0.099 0.901 9 C 0.146 3.854 10 C -0.329 4.329 11 C -0.061 4.061 12 C -0.384 4.384 13 C 0.134 3.866 14 N -0.316 5.316 15 C 0.250 3.750 16 O -0.269 6.269 17 C -0.171 4.171 18 C -0.049 4.049 19 H 0.112 0.888 20 C -0.143 4.143 21 C -0.123 4.123 22 C -0.092 4.092 23 C -0.130 4.130 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.125 4.125 27 C -0.085 4.085 28 N -0.192 5.192 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.231 0.769 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.068 1.417 1.508 16.200 hybrid contribution 0.382 -0.803 -0.087 0.893 sum -15.686 0.614 1.421 15.762 Atomic orbital electron populations 1.70330 1.05676 1.27233 1.24026 1.26152 0.95137 1.00461 0.95247 0.86548 0.80611 0.81987 0.79001 1.19683 1.18815 1.20328 1.19567 0.94024 0.89383 1.42630 0.90058 1.18401 0.87260 0.91922 0.87856 1.21624 0.98526 0.93576 1.19184 1.20562 0.93229 0.96505 0.95840 1.20510 0.94796 0.95032 1.28093 1.18641 0.83462 0.90860 0.93642 1.43486 1.05035 1.09424 1.73694 1.20732 0.89288 0.84931 0.80080 1.91124 1.65452 1.30624 1.39663 1.21750 0.94180 0.97803 1.03379 1.20428 0.88783 0.95049 1.00602 0.88755 1.22342 0.98023 0.97796 0.96123 1.21158 0.91659 0.99151 1.00355 1.20720 0.94155 0.97000 0.97374 1.20621 0.91729 1.00200 1.00433 1.20987 0.98987 0.96912 0.97482 1.20998 0.95650 0.98673 0.98983 1.20656 0.92255 0.99781 0.99829 1.20725 0.95543 0.96033 0.96232 1.68712 1.06910 1.23205 1.20347 0.91704 0.88643 0.88712 0.89190 0.76929 0.90039 0.89635 0.91476 0.88622 0.91051 0.90291 0.86541 0.86264 0.86184 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -17.63 9.00 55.55 0.50 -17.13 16 2 C 0.06 1.54 5.50 -17.35 -0.10 1.44 16 3 Si 0.89 19.09 29.56 -169.99 -5.02 14.07 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 7 C -0.43 -11.65 9.14 -37.73 -0.34 -12.00 16 8 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 9 C 0.27 7.60 6.55 -84.99 -0.56 7.04 16 10 C -0.31 -7.74 9.83 -38.66 -0.38 -8.12 16 11 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 12 C -0.36 -8.08 9.96 -38.89 -0.39 -8.47 16 13 C 0.37 9.03 7.43 -154.97 -1.15 7.87 16 14 N -0.67 -12.94 5.38 -11.40 -0.06 -13.01 16 15 C 0.47 8.98 7.60 -10.99 -0.08 8.89 16 16 O -0.41 -9.50 10.37 5.56 0.06 -9.44 16 17 C -0.13 -1.81 4.99 -27.88 -0.14 -1.95 16 18 C -0.03 -0.43 2.52 -90.73 -0.23 -0.66 16 19 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 20 C -0.11 -1.54 5.54 -25.32 -0.14 -1.68 16 21 C -0.09 -1.06 6.77 -26.85 -0.18 -1.24 16 22 C -0.09 -1.16 6.14 -104.21 -0.64 -1.80 16 23 C -0.11 -1.23 10.04 -39.53 -0.40 -1.63 16 24 C -0.13 -1.26 10.05 -39.62 -0.40 -1.66 16 25 C -0.13 -1.27 10.05 -39.63 -0.40 -1.67 16 26 C -0.11 -1.22 9.72 -39.54 -0.38 -1.60 16 27 C -0.09 -1.10 5.61 -104.20 -0.58 -1.68 16 28 N -0.47 -13.13 5.74 -10.25 -0.06 -13.19 16 29 H 0.27 6.82 8.29 -40.82 -0.34 6.48 16 30 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 31 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 32 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 33 H 0.40 5.94 8.70 -40.82 -0.36 5.58 16 34 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 35 H 0.09 1.08 8.07 -51.93 -0.42 0.66 16 36 H 0.07 1.00 7.86 -51.93 -0.41 0.59 16 37 H 0.10 1.63 7.44 -51.93 -0.39 1.24 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.12 1.17 7.76 -52.49 -0.41 0.76 16 LS Contribution 355.35 15.07 5.36 5.36 Total: -1.00 -31.91 355.35 -11.85 -43.75 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.73 Total: 9.74 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -6.89 Total: -20.15 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.38 Total: -43.32 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.06 Total: -9.44 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.91 -11.85 -43.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.388 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds