Wall clock time and date at job start Tue Mar 31 2020 13:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86805 * 120.00293 * 2 1 4 4 H 1.48495 * 109.47010 * 90.00071 * 3 2 1 5 5 H 1.48503 * 109.46918 * 210.00115 * 3 2 1 6 6 H 1.48499 * 109.46762 * 329.99931 * 3 2 1 7 7 C 1.40030 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00428 * 180.02562 * 7 2 1 9 9 C 1.41339 * 119.99580 * 359.97438 * 7 2 1 10 10 C 1.40621 * 119.78847 * 179.97438 * 9 7 2 11 11 C 1.38296 * 119.13021 * 179.97438 * 10 9 7 12 12 C 1.38706 * 118.66899 * 0.02562 * 11 10 9 13 13 C 1.39630 * 119.49550 * 359.97438 * 12 11 10 14 14 N 1.39275 * 119.57348 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99820 * 174.46051 * 14 13 12 16 16 O 1.21272 * 120.00227 * 4.96148 * 15 14 13 17 17 C 1.50701 * 119.99393 * 184.97146 * 15 14 13 18 18 C 1.53004 * 109.46438 * 184.61716 * 17 15 14 19 19 H 1.08998 * 110.27492 * 56.02194 * 18 17 15 20 20 C 1.54344 * 110.30369 * 293.93880 * 18 17 15 21 21 C 1.54343 * 102.39422 * 214.73446 * 20 18 17 22 22 C 1.51365 * 105.17271 * 26.34844 * 21 20 18 23 23 C 1.38498 * 130.39441 * 162.81275 * 22 21 20 24 24 C 1.38105 * 120.21214 * 180.02562 * 23 22 21 25 25 C 1.38252 * 119.93984 * 359.97438 * 24 23 22 26 26 C 1.38099 * 119.93387 * 0.02562 * 25 24 23 27 27 C 1.38222 * 109.75805 * 342.81219 * 22 21 20 28 28 N 1.31928 * 120.85152 * 359.74551 * 13 12 11 29 29 H 0.97004 * 119.99679 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.42941 * 0.02562 * 10 9 7 31 31 H 1.08003 * 120.66960 * 179.97438 * 11 10 9 32 32 H 1.08003 * 120.25104 * 179.97438 * 12 11 10 33 33 H 0.96997 * 119.99926 * 354.45256 * 14 13 12 34 34 H 1.08996 * 109.47094 * 304.60952 * 17 15 14 35 35 H 1.08996 * 109.47811 * 64.61470 * 17 15 14 36 36 H 1.09006 * 110.82495 * 332.96178 * 20 18 17 37 37 H 1.08996 * 110.82291 * 96.50672 * 20 18 17 38 38 H 1.08998 * 110.30572 * 145.27729 * 21 20 18 39 39 H 1.09006 * 110.30407 * 267.42529 * 21 20 18 40 40 H 1.07995 * 119.89258 * 359.97438 * 23 22 21 41 41 H 1.08004 * 120.02802 * 180.02562 * 24 23 22 42 42 H 1.08000 * 120.03588 * 179.97438 * 25 24 23 43 43 H 1.07996 * 119.89294 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 1.4000 5 1 3.5390 1.4401 -0.7001 6 1 1.4389 2.6526 -0.7001 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0001 9 6 1.3008 -2.4367 -0.0005 10 6 2.0083 -3.6519 -0.0016 11 6 1.3030 -4.8415 -0.0011 12 6 -0.0832 -4.7933 0.0000 13 6 -0.7280 -3.5548 0.0010 14 7 -2.1198 -3.5045 0.0027 15 6 -2.7511 -2.3192 0.1163 16 8 -2.1106 -1.2895 0.1266 17 6 -4.2531 -2.2735 0.2309 18 6 -4.7203 -0.8166 0.2310 19 1 -4.3584 -0.3038 -0.6602 20 6 -4.2248 -0.0953 1.5024 21 6 -5.3873 0.8727 1.8084 22 6 -6.6142 0.2211 1.2073 23 6 -7.9594 0.4587 1.4352 24 6 -8.9182 -0.2712 0.7605 25 6 -8.5349 -1.2421 -0.1461 26 6 -7.1940 -1.4805 -0.3748 27 6 -6.2310 -0.7495 0.3009 28 7 -0.0358 -2.4317 0.0060 29 1 -0.4850 0.8401 0.0004 30 1 3.0882 -3.6561 -0.0021 31 1 1.8212 -5.7892 -0.0023 32 1 -0.6594 -5.7068 0.0000 33 1 -2.6348 -4.3225 -0.0781 34 1 -4.6981 -2.7977 -0.6148 35 1 -4.5615 -2.7541 1.1593 36 1 -4.0845 -0.8029 2.3196 37 1 -3.3052 0.4545 1.3024 38 1 -5.5098 0.9883 2.8853 39 1 -5.2062 1.8410 1.3416 40 1 -8.2596 1.2167 2.1435 41 1 -9.9664 -0.0832 0.9402 42 1 -9.2833 -1.8141 -0.6743 43 1 -6.8953 -2.2393 -1.0828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882475355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:51 Heat of formation + Delta-G solvation = 23.723280 kcal Electronic energy + Delta-G solvation = -26386.999330 eV Core-core repulsion = 22782.535286 eV Total energy + Delta-G solvation = -3604.464044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.41798 -40.63382 -39.20618 -36.74683 -35.80553 -34.78103 -33.20338 -32.20215 -31.31682 -30.36253 -29.59203 -27.53498 -26.28971 -23.73279 -23.48880 -23.02821 -21.82704 -21.37933 -20.54142 -19.50727 -17.96402 -17.85212 -17.03109 -16.50282 -16.27046 -16.15338 -16.12489 -15.82065 -15.69853 -15.44663 -14.74746 -14.48749 -14.42300 -13.94005 -13.91846 -13.60897 -13.55113 -13.47754 -12.92123 -12.76747 -12.72447 -12.55023 -12.41752 -12.31152 -11.99400 -11.83501 -11.75943 -11.66454 -11.55940 -11.44097 -10.82706 -10.50417 -9.87340 -9.67304 -9.39974 -9.03588 -8.77628 -8.03264 -6.40105 0.48524 0.52725 0.94686 1.26993 1.39880 1.51002 1.53564 2.22384 2.26903 2.40504 2.89987 3.01611 3.49779 3.60743 3.93319 4.03833 4.08691 4.11163 4.22134 4.26551 4.38761 4.39468 4.53261 4.58128 4.65038 4.71436 4.78028 4.87550 4.94642 4.96649 4.98781 5.02358 5.09749 5.17195 5.19329 5.30724 5.35075 5.38555 5.63047 5.66068 5.70215 5.82335 5.89501 5.94470 6.16450 6.17879 6.40102 6.78722 6.88764 7.11013 7.78605 8.37619 8.58365 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.003668 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.250179 B = 7632.107788 C = 9276.640214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.684 5.684 2 C 0.014 3.986 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.258 1.258 6 H -0.273 1.273 7 C -0.466 4.466 8 H 0.083 0.917 9 C 0.237 3.763 10 C -0.332 4.332 11 C -0.036 4.036 12 C -0.349 4.349 13 C 0.351 3.649 14 N -0.659 5.659 15 C 0.458 3.542 16 O -0.451 6.451 17 C -0.112 4.112 18 C -0.025 4.025 19 H 0.068 0.932 20 C -0.104 4.104 21 C -0.080 4.080 22 C -0.109 4.109 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.114 4.114 27 C -0.101 4.101 28 N -0.506 5.506 29 H 0.270 0.730 30 H 0.102 0.898 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.419 0.581 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.134 0.866 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.471 -1.668 1.460 18.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.303 5.303 2 C -0.212 4.212 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.182 1.182 6 H -0.198 1.198 7 C -0.497 4.497 8 H 0.101 0.899 9 C 0.111 3.889 10 C -0.355 4.355 11 C -0.060 4.060 12 C -0.375 4.375 13 C 0.112 3.888 14 N -0.309 5.309 15 C 0.242 3.758 16 O -0.317 6.317 17 C -0.152 4.152 18 C -0.044 4.044 19 H 0.086 0.914 20 C -0.142 4.142 21 C -0.117 4.117 22 C -0.109 4.109 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.132 4.132 27 C -0.101 4.101 28 N -0.226 5.226 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.257 0.743 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.152 0.848 41 H 0.165 0.835 42 H 0.166 0.834 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.695 0.093 1.493 18.755 hybrid contribution 1.080 -0.576 -0.086 1.227 sum -17.615 -0.483 1.407 17.678 Atomic orbital electron populations 1.70509 1.07051 1.27876 1.24889 1.26957 0.96041 1.03676 0.94526 0.85388 0.79172 0.77148 0.79093 1.19147 1.18161 1.19791 1.19868 0.94332 0.90514 1.44958 0.89906 1.18884 0.88121 0.93287 0.88609 1.21796 0.99114 0.93951 1.20683 1.21030 0.93677 0.97264 0.94047 1.20988 0.95146 0.95891 1.25443 1.19174 0.85442 0.90943 0.93219 1.43511 1.03439 1.10831 1.73092 1.21709 0.91375 0.84142 0.78564 1.91132 1.66989 1.32184 1.41375 1.21667 0.89778 0.98217 1.05542 1.20264 0.90335 0.94827 0.98975 0.91380 1.22189 0.97530 0.98058 0.96416 1.21064 0.91031 0.98438 1.01166 1.20787 0.94785 0.97426 0.97928 1.20893 0.91111 1.00780 1.00898 1.21384 1.00229 0.96025 0.96517 1.21371 0.95631 0.98579 0.98700 1.20900 0.92606 0.99886 0.99795 1.20599 0.94399 0.97469 0.97678 1.68682 1.07136 1.25330 1.21423 0.91905 0.87990 0.84746 0.85203 0.74344 0.87017 0.87684 0.92141 0.92192 0.89885 0.90417 0.84840 0.83462 0.83447 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -39.05 9.00 21.84 0.20 -38.86 16 2 C 0.01 0.76 5.50 85.29 0.47 1.22 16 3 Si 0.97 40.97 29.56 68.60 2.03 43.00 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 7 C -0.47 -26.80 9.14 23.47 0.21 -26.59 16 8 H 0.08 4.49 7.85 -2.91 -0.02 4.47 16 9 C 0.24 13.82 6.55 40.21 0.26 14.09 16 10 C -0.33 -17.12 9.83 22.87 0.22 -16.89 16 11 C -0.04 -1.60 10.15 22.40 0.23 -1.37 16 12 C -0.35 -15.10 9.96 22.72 0.23 -14.88 16 13 C 0.35 17.05 7.43 133.23 0.99 18.04 16 14 N -0.66 -25.11 5.38 -308.38 -1.66 -26.77 16 15 C 0.46 17.85 7.60 87.66 0.67 18.51 16 16 O -0.45 -22.30 10.37 -3.01 -0.03 -22.33 16 17 C -0.11 -3.01 4.99 29.85 0.15 -2.86 16 18 C -0.03 -0.73 2.52 -10.87 -0.03 -0.76 16 19 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 20 C -0.10 -3.24 5.54 31.51 0.17 -3.06 16 21 C -0.08 -2.01 6.77 30.52 0.21 -1.81 16 22 C -0.11 -2.63 6.14 -19.59 -0.12 -2.75 16 23 C -0.12 -2.34 10.04 22.30 0.22 -2.11 16 24 C -0.12 -2.05 10.05 22.24 0.22 -1.82 16 25 C -0.13 -2.09 10.05 22.24 0.22 -1.87 16 26 C -0.11 -2.30 9.72 22.30 0.22 -2.08 16 27 C -0.10 -2.50 5.61 -19.59 -0.11 -2.61 16 28 N -0.51 -29.14 5.74 -186.35 -1.07 -30.21 16 29 H 0.27 14.51 8.29 -92.71 -0.77 13.74 16 30 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 31 H 0.13 4.80 8.06 -2.91 -0.02 4.77 16 32 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 33 H 0.42 11.62 8.70 -92.71 -0.81 10.81 16 34 H 0.11 2.33 7.75 -2.39 -0.02 2.31 16 35 H 0.10 2.46 8.07 -2.39 -0.02 2.44 16 36 H 0.06 1.90 7.86 -2.38 -0.02 1.88 16 37 H 0.06 2.27 7.44 -2.39 -0.02 2.25 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.13 2.21 7.76 -2.91 -0.02 2.18 16 Total: -1.00 -73.85 355.35 4.13 -69.72 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: 0.23 Total: 35.04 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: 4.44 Total: -29.59 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -2.53 Total: -95.84 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.03 Total: -22.33 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -73.85 4.13 -69.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.445 kcal (2) G-P(sol) polarization free energy of solvation -73.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds