Wall clock time and date at job start Tue Mar 31 2020 13:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86796 * 119.99876 * 2 1 4 4 H 1.48504 * 109.47365 * 264.99292 * 3 2 1 5 5 H 1.48500 * 109.47163 * 24.98944 * 3 2 1 6 6 H 1.48495 * 109.47241 * 144.98928 * 3 2 1 7 7 C 1.40027 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99491 * 188.10106 * 7 2 1 9 9 C 1.41332 * 120.00074 * 8.09042 * 7 2 1 10 10 C 1.40614 * 119.78657 * 188.34846 * 9 7 2 11 11 C 1.38317 * 119.12885 * 180.29456 * 10 9 7 12 12 C 1.38699 * 118.66592 * 359.49157 * 11 10 9 13 13 C 1.39634 * 119.49413 * 0.24860 * 12 11 10 14 14 N 1.39272 * 119.57239 * 179.97438 * 13 12 11 15 15 C 1.34784 * 119.99767 * 338.69716 * 14 13 12 16 16 O 1.21272 * 120.00117 * 3.12178 * 15 14 13 17 17 C 1.50703 * 119.99532 * 183.12157 * 15 14 13 18 18 C 1.50701 * 112.84896 * 59.92316 * 17 15 14 19 19 C 1.38234 * 120.00303 * 111.73955 * 18 17 15 20 20 C 1.38232 * 120.00215 * 179.78671 * 19 18 17 21 21 C 1.38237 * 119.99715 * 0.46147 * 20 19 18 22 22 C 1.38233 * 120.00115 * 359.77227 * 21 20 19 23 23 C 1.38236 * 120.00129 * 0.02562 * 22 21 20 24 24 C 1.53779 * 113.61520 * 288.60956 * 17 15 14 25 25 C 1.53777 * 87.08259 * 270.88699 * 24 17 15 26 26 C 1.53781 * 113.60938 * 191.11331 * 17 15 14 27 27 N 1.31927 * 120.85704 * 0.02562 * 13 12 11 28 28 H 0.96993 * 119.99899 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.44184 * 0.05920 * 10 9 7 30 30 H 1.07994 * 120.66582 * 179.76447 * 11 10 9 31 31 H 1.07990 * 120.25057 * 180.22385 * 12 11 10 32 32 H 0.97002 * 120.00196 * 158.69186 * 14 13 12 33 33 H 1.08006 * 119.99717 * 0.02562 * 19 18 17 34 34 H 1.08003 * 120.00239 * 180.25408 * 20 19 18 35 35 H 1.08000 * 119.99895 * 179.79081 * 21 20 19 36 36 H 1.08006 * 119.99968 * 180.02562 * 22 21 20 37 37 H 1.07996 * 119.99955 * 179.97438 * 23 22 21 38 38 H 1.09001 * 113.61637 * 25.44067 * 24 17 15 39 39 H 1.08999 * 113.60862 * 156.33939 * 24 17 15 40 40 H 1.08998 * 113.61555 * 220.02179 * 25 24 17 41 41 H 1.09000 * 113.61536 * 89.11451 * 25 24 17 42 42 H 1.09006 * 113.61387 * 203.66604 * 26 17 15 43 43 H 1.09003 * 113.61981 * 334.48515 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.5948 1.9854 -1.3947 5 1 1.3899 2.6809 0.5915 6 1 3.4820 1.4731 0.8032 7 6 2.0076 -1.2127 -0.0005 8 1 3.0796 -1.2173 0.1313 9 6 1.3115 -2.4305 -0.1733 10 6 1.9864 -3.6517 0.0014 11 6 1.2935 -4.8354 -0.1771 12 6 -0.0509 -4.7752 -0.5132 13 6 -0.6660 -3.5312 -0.6670 14 7 -2.0157 -3.4689 -1.0050 15 6 -2.6129 -4.5252 -1.5918 16 8 -1.9902 -5.5497 -1.7741 17 6 -4.0545 -4.4329 -2.0213 18 6 -4.2955 -3.3400 -3.0305 19 6 -4.6366 -3.6628 -4.3307 20 6 -4.8620 -2.6602 -5.2553 21 6 -4.7371 -1.3350 -4.8822 22 6 -4.3913 -1.0124 -3.5833 23 6 -4.1700 -2.0148 -2.6576 24 6 -5.0475 -4.4198 -0.8471 25 6 -5.0612 -5.9544 -0.9442 26 6 -4.6659 -5.7862 -2.4208 27 7 0.0149 -2.4140 -0.4975 28 1 -0.4849 0.8400 0.0004 29 1 3.0329 -3.6653 0.2677 30 1 1.7882 -5.7873 -0.0530 31 1 -0.6173 -5.6836 -0.6551 32 1 -2.5259 -2.6654 -0.8179 33 1 -4.7306 -4.6982 -4.6231 34 1 -5.1325 -2.9123 -6.2701 35 1 -4.9099 -0.5518 -5.6054 36 1 -4.2941 0.0230 -3.2917 37 1 -3.8994 -1.7627 -1.6429 38 1 -4.6195 -4.0449 0.0826 39 1 -6.0046 -3.9583 -1.0900 40 1 -6.0497 -6.3920 -0.8040 41 1 -4.2938 -6.4371 -0.3391 42 1 -5.5188 -5.6983 -3.0939 43 1 -3.9301 -6.5139 -2.7629 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882476591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:12 Heat of formation + Delta-G solvation = 56.848540 kcal Electronic energy + Delta-G solvation = -26834.961508 eV Core-core repulsion = 23231.933883 eV Total energy + Delta-G solvation = -3603.027625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.07862 -38.99823 -38.05430 -36.86994 -34.32922 -33.29347 -31.27752 -30.91491 -30.41103 -29.25428 -26.37054 -25.82264 -25.34060 -22.76115 -22.25854 -21.68443 -21.50550 -20.55385 -18.85536 -17.57315 -17.23365 -16.83039 -16.08179 -15.51763 -15.19650 -14.82559 -14.78492 -14.42871 -14.39721 -14.05852 -13.59170 -13.42926 -13.29948 -12.86505 -12.69304 -12.44591 -12.21518 -12.02746 -11.92053 -11.59444 -11.28042 -11.20555 -11.08340 -10.97013 -10.77203 -10.67444 -10.45156 -10.30951 -10.13757 -9.80725 -9.22589 -9.08288 -8.87591 -8.51943 -8.05907 -7.69364 -7.14243 -6.48215 -4.50146 1.32797 1.44170 2.48067 2.88247 3.07669 3.10610 3.21674 3.29427 3.50546 3.87838 3.94170 4.32028 4.57624 4.61959 4.74068 4.75899 4.91905 5.03751 5.07765 5.14492 5.40511 5.52814 5.60569 5.63720 5.68185 5.85100 5.89013 5.97239 6.01944 6.06303 6.07679 6.16611 6.32288 6.41977 6.49477 6.55298 6.59602 6.76366 6.79401 6.84796 7.01170 7.13149 7.46465 7.50416 7.83997 7.90325 8.12050 8.29002 8.64067 8.71254 8.95269 10.02113 10.29310 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.004491 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.544898 B = 6233.508800 C = 7859.492354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.726 5.726 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.439 4.439 8 H 0.085 0.915 9 C 0.282 3.718 10 C -0.287 4.287 11 C -0.051 4.051 12 C -0.314 4.314 13 C 0.355 3.645 14 N -0.640 5.640 15 C 0.542 3.458 16 O -0.515 6.515 17 C -0.068 4.068 18 C -0.066 4.066 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.111 4.111 23 C -0.105 4.105 24 C -0.120 4.120 25 C -0.140 4.140 26 C -0.116 4.116 27 N -0.509 5.509 28 H 0.272 0.728 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.136 0.864 32 H 0.405 0.595 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.535 -2.892 -5.292 14.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.348 5.348 2 C -0.149 4.149 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.471 4.471 8 H 0.103 0.897 9 C 0.155 3.845 10 C -0.310 4.310 11 C -0.075 4.075 12 C -0.338 4.338 13 C 0.121 3.879 14 N -0.284 5.284 15 C 0.327 3.673 16 O -0.390 6.390 17 C -0.071 4.071 18 C -0.066 4.066 19 C -0.129 4.129 20 C -0.139 4.139 21 C -0.141 4.141 22 C -0.130 4.130 23 C -0.123 4.123 24 C -0.158 4.158 25 C -0.177 4.177 26 C -0.153 4.153 27 N -0.227 5.227 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.153 0.847 32 H 0.241 0.759 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.704 -2.676 -5.516 15.013 hybrid contribution 0.704 0.596 0.118 0.930 sum -13.000 -2.080 -5.397 14.229 Atomic orbital electron populations 1.70031 1.07334 1.27783 1.29675 1.25989 0.94813 1.00954 0.93129 0.86368 0.80404 0.80750 0.79416 1.19346 1.20274 1.18625 1.19524 0.94992 0.89516 1.43023 0.89688 1.18155 0.86468 0.92070 0.87759 1.21740 1.00069 0.93512 1.15667 1.20840 0.93950 0.96681 0.96053 1.21765 0.96479 0.97617 1.17975 1.18486 0.83715 0.91062 0.94657 1.43218 1.09597 1.17422 1.58182 1.19627 0.87260 0.83279 0.77089 1.90570 1.64254 1.29946 1.54215 1.20931 0.92730 0.96499 0.96977 1.19387 1.00090 0.93130 0.93984 1.21024 0.99795 0.99587 0.92464 1.21099 1.00656 0.92939 0.99242 1.21153 1.00218 0.96394 0.96326 1.21146 0.98959 0.99448 0.93400 1.21030 0.99189 0.92109 1.00014 1.22993 0.98515 0.97496 0.96758 1.22835 1.02055 0.95783 0.97045 1.22893 1.00432 0.94787 0.97224 1.67944 1.08811 1.25306 1.20662 0.91713 0.88220 0.88320 0.84699 0.75875 0.85775 0.86153 0.86228 0.85782 0.86012 0.90653 0.88857 0.90940 0.89623 0.89160 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.78 11.59 55.55 0.64 -18.14 16 2 C 0.08 1.91 5.46 -17.34 -0.09 1.82 16 3 Si 0.91 18.50 29.57 -169.99 -5.03 13.47 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.44 -11.76 9.13 -37.74 -0.34 -12.10 16 8 H 0.09 2.14 7.86 -52.49 -0.41 1.72 16 9 C 0.28 7.83 6.51 -85.00 -0.55 7.27 16 10 C -0.29 -7.29 9.83 -38.66 -0.38 -7.67 16 11 C -0.05 -1.21 10.15 -39.38 -0.40 -1.61 16 12 C -0.31 -7.78 8.88 -38.89 -0.35 -8.13 16 13 C 0.36 8.94 7.50 -154.97 -1.16 7.78 16 14 N -0.64 -13.25 5.20 -11.40 -0.06 -13.31 16 15 C 0.54 10.18 6.39 -10.98 -0.07 10.11 16 16 O -0.51 -11.05 12.58 5.56 0.07 -10.98 16 17 C -0.07 -0.95 0.95 -156.00 -0.15 -1.10 16 18 C -0.07 -0.90 4.86 -104.62 -0.51 -1.41 16 19 C -0.11 -1.38 9.04 -39.59 -0.36 -1.74 16 20 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 21 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 22 C -0.11 -1.43 10.05 -39.58 -0.40 -1.83 16 23 C -0.11 -1.47 8.89 -39.58 -0.35 -1.82 16 24 C -0.12 -1.38 7.07 -25.92 -0.18 -1.57 16 25 C -0.14 -1.56 7.80 -25.92 -0.20 -1.76 16 26 C -0.12 -1.38 6.12 -25.92 -0.16 -1.54 16 27 N -0.51 -13.98 8.03 -10.26 -0.08 -14.07 16 28 H 0.27 6.35 8.29 -40.82 -0.34 6.01 16 29 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 30 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 31 H 0.14 3.28 5.21 -52.76 -0.27 3.01 16 32 H 0.40 7.72 6.50 -40.82 -0.27 7.45 16 33 H 0.12 1.35 6.54 -52.48 -0.34 1.01 16 34 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 37 H 0.12 1.69 6.29 -52.49 -0.33 1.36 16 38 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 39 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.09 0.87 6.93 -51.93 -0.36 0.51 16 43 H 0.09 1.17 7.35 -51.93 -0.38 0.78 16 LS Contribution 354.75 15.07 5.35 5.35 Total: -1.00 -31.19 354.75 -10.86 -42.05 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -5.30 Total: 14.55 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -6.45 Total: -18.93 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.50 Total: -45.51 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.07 Total: -10.98 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.19 -10.86 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882476591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.901 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds