Wall clock time and date at job start Tue Mar 31 2020 13:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86796 * 119.99876 * 2 1 4 4 H 1.48504 * 109.47365 * 264.99292 * 3 2 1 5 5 H 1.48500 * 109.47163 * 24.98944 * 3 2 1 6 6 H 1.48495 * 109.47241 * 144.98928 * 3 2 1 7 7 C 1.40027 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99491 * 188.10106 * 7 2 1 9 9 C 1.41332 * 120.00074 * 8.09042 * 7 2 1 10 10 C 1.40614 * 119.78657 * 188.34846 * 9 7 2 11 11 C 1.38317 * 119.12885 * 180.29456 * 10 9 7 12 12 C 1.38699 * 118.66592 * 359.49157 * 11 10 9 13 13 C 1.39634 * 119.49413 * 0.24860 * 12 11 10 14 14 N 1.39272 * 119.57239 * 179.97438 * 13 12 11 15 15 C 1.34784 * 119.99767 * 338.69716 * 14 13 12 16 16 O 1.21272 * 120.00117 * 3.12178 * 15 14 13 17 17 C 1.50703 * 119.99532 * 183.12157 * 15 14 13 18 18 C 1.50701 * 112.84896 * 59.92316 * 17 15 14 19 19 C 1.38234 * 120.00303 * 111.73955 * 18 17 15 20 20 C 1.38232 * 120.00215 * 179.78671 * 19 18 17 21 21 C 1.38237 * 119.99715 * 0.46147 * 20 19 18 22 22 C 1.38233 * 120.00115 * 359.77227 * 21 20 19 23 23 C 1.38236 * 120.00129 * 0.02562 * 22 21 20 24 24 C 1.53779 * 113.61520 * 288.60956 * 17 15 14 25 25 C 1.53777 * 87.08259 * 270.88699 * 24 17 15 26 26 C 1.53781 * 113.60938 * 191.11331 * 17 15 14 27 27 N 1.31927 * 120.85704 * 0.02562 * 13 12 11 28 28 H 0.96993 * 119.99899 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.44184 * 0.05920 * 10 9 7 30 30 H 1.07994 * 120.66582 * 179.76447 * 11 10 9 31 31 H 1.07990 * 120.25057 * 180.22385 * 12 11 10 32 32 H 0.97002 * 120.00196 * 158.69186 * 14 13 12 33 33 H 1.08006 * 119.99717 * 0.02562 * 19 18 17 34 34 H 1.08003 * 120.00239 * 180.25408 * 20 19 18 35 35 H 1.08000 * 119.99895 * 179.79081 * 21 20 19 36 36 H 1.08006 * 119.99968 * 180.02562 * 22 21 20 37 37 H 1.07996 * 119.99955 * 179.97438 * 23 22 21 38 38 H 1.09001 * 113.61637 * 25.44067 * 24 17 15 39 39 H 1.08999 * 113.60862 * 156.33939 * 24 17 15 40 40 H 1.08998 * 113.61555 * 220.02179 * 25 24 17 41 41 H 1.09000 * 113.61536 * 89.11451 * 25 24 17 42 42 H 1.09006 * 113.61387 * 203.66604 * 26 17 15 43 43 H 1.09003 * 113.61981 * 334.48515 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.5948 1.9854 -1.3947 5 1 1.3899 2.6809 0.5915 6 1 3.4820 1.4731 0.8032 7 6 2.0076 -1.2127 -0.0005 8 1 3.0796 -1.2173 0.1313 9 6 1.3115 -2.4305 -0.1733 10 6 1.9864 -3.6517 0.0014 11 6 1.2935 -4.8354 -0.1771 12 6 -0.0509 -4.7752 -0.5132 13 6 -0.6660 -3.5312 -0.6670 14 7 -2.0157 -3.4689 -1.0050 15 6 -2.6129 -4.5252 -1.5918 16 8 -1.9902 -5.5497 -1.7741 17 6 -4.0545 -4.4329 -2.0213 18 6 -4.2955 -3.3400 -3.0305 19 6 -4.6366 -3.6628 -4.3307 20 6 -4.8620 -2.6602 -5.2553 21 6 -4.7371 -1.3350 -4.8822 22 6 -4.3913 -1.0124 -3.5833 23 6 -4.1700 -2.0148 -2.6576 24 6 -5.0475 -4.4198 -0.8471 25 6 -5.0612 -5.9544 -0.9442 26 6 -4.6659 -5.7862 -2.4208 27 7 0.0149 -2.4140 -0.4975 28 1 -0.4849 0.8400 0.0004 29 1 3.0329 -3.6653 0.2677 30 1 1.7882 -5.7873 -0.0530 31 1 -0.6173 -5.6836 -0.6551 32 1 -2.5259 -2.6654 -0.8179 33 1 -4.7306 -4.6982 -4.6231 34 1 -5.1325 -2.9123 -6.2701 35 1 -4.9099 -0.5518 -5.6054 36 1 -4.2941 0.0230 -3.2917 37 1 -3.8994 -1.7627 -1.6429 38 1 -4.6195 -4.0449 0.0826 39 1 -6.0046 -3.9583 -1.0900 40 1 -6.0497 -6.3920 -0.8040 41 1 -4.2938 -6.4371 -0.3391 42 1 -5.5188 -5.6983 -3.0939 43 1 -3.9301 -6.5139 -2.7629 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882476591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:12 Heat of formation + Delta-G solvation = 41.283354 kcal Electronic energy + Delta-G solvation = -26835.636466 eV Core-core repulsion = 23231.933883 eV Total energy + Delta-G solvation = -3603.702582 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.35964 -40.47984 -39.46526 -38.20336 -36.07984 -35.15521 -32.42827 -32.25324 -31.87080 -31.07117 -27.83867 -26.99306 -26.77645 -24.20816 -23.58425 -23.21330 -22.61273 -22.14240 -20.28852 -19.33132 -18.47655 -18.26115 -17.55804 -16.86313 -16.62892 -16.30758 -16.22160 -15.80451 -15.76044 -15.48998 -15.08974 -14.74577 -14.44158 -14.27619 -14.14553 -13.84305 -13.70940 -13.36082 -13.00995 -12.94438 -12.88357 -12.71312 -12.60936 -12.48731 -12.05507 -11.88176 -11.81186 -11.58918 -11.41294 -11.29404 -11.04048 -10.64392 -10.03235 -9.83710 -9.68204 -9.60560 -9.06367 -8.38297 -6.52201 0.33911 0.48166 0.69088 1.05200 1.40958 1.50113 1.53902 1.66626 1.99276 2.22627 2.82351 2.87216 3.28167 3.54728 3.59436 3.67713 3.81643 3.89531 4.11419 4.13683 4.25893 4.30548 4.41524 4.58148 4.61833 4.69411 4.74071 4.77461 4.83947 4.89428 4.91553 4.98324 5.04533 5.08526 5.11338 5.12812 5.21805 5.40326 5.55865 5.58283 5.60818 5.61675 5.62912 5.89602 6.03180 6.08089 6.23104 6.44910 6.74625 6.89688 7.12533 8.04915 8.42027 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.004491 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.544898 B = 6233.508800 C = 7859.492354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.031 3.969 3 Si 0.987 3.013 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.255 1.255 7 C -0.469 4.469 8 H 0.092 0.908 9 C 0.247 3.753 10 C -0.306 4.306 11 C -0.049 4.049 12 C -0.330 4.330 13 C 0.344 3.656 14 N -0.639 5.639 15 C 0.539 3.461 16 O -0.545 6.545 17 C -0.069 4.069 18 C -0.079 4.079 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.112 4.112 25 C -0.135 4.135 26 C -0.108 4.108 27 N -0.535 5.535 28 H 0.281 0.719 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.410 0.590 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.121 0.879 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.911 -2.230 -6.496 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.191 1.191 5 H -0.190 1.190 6 H -0.179 1.179 7 C -0.500 4.500 8 H 0.110 0.890 9 C 0.121 3.879 10 C -0.329 4.329 11 C -0.073 4.073 12 C -0.354 4.354 13 C 0.109 3.891 14 N -0.284 5.284 15 C 0.327 3.673 16 O -0.422 6.422 17 C -0.073 4.073 18 C -0.080 4.080 19 C -0.136 4.136 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.149 4.149 25 C -0.173 4.173 26 C -0.145 4.145 27 N -0.254 5.254 28 H 0.092 0.908 29 H 0.132 0.868 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.248 0.752 33 H 0.158 0.842 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.150 0.850 37 H 0.129 0.871 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.121 0.879 41 H 0.082 0.918 42 H 0.139 0.861 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.109 -2.037 -6.717 16.660 hybrid contribution 1.089 0.352 0.450 1.230 sum -14.020 -1.684 -6.267 15.449 Atomic orbital electron populations 1.70104 1.08908 1.29386 1.29321 1.26916 0.95713 1.04351 0.92154 0.85156 0.79055 0.75642 0.79438 1.19108 1.18995 1.17871 1.19912 0.95588 0.90438 1.44082 0.89027 1.18684 0.87209 0.93467 0.88531 1.21925 1.00911 0.93426 1.16594 1.21204 0.93739 0.97745 0.94637 1.21992 0.97173 0.97695 1.18553 1.18890 0.85389 0.90893 0.93956 1.43316 1.08150 1.18449 1.58502 1.20579 0.89078 0.81994 0.75604 1.90526 1.65625 1.30868 1.55148 1.20923 0.89552 0.98303 0.98476 1.19418 1.01253 0.92697 0.94607 1.21299 0.99455 1.00857 0.91960 1.21481 0.99457 0.92537 1.00381 1.21504 0.99065 0.97448 0.96141 1.21372 0.99283 0.99692 0.94059 1.21091 1.00336 0.92869 1.00005 1.23046 0.98662 0.98018 0.95209 1.22802 1.02993 0.95384 0.96081 1.22962 1.00686 0.92632 0.98268 1.67977 1.09183 1.26304 1.21934 0.90821 0.86771 0.85073 0.84404 0.75239 0.84193 0.83234 0.83709 0.85030 0.87104 0.91719 0.86326 0.87869 0.91830 0.86070 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -39.78 11.59 21.84 0.25 -39.53 16 2 C 0.03 1.56 5.46 85.29 0.47 2.03 16 3 Si 0.99 37.81 29.57 68.60 2.03 39.84 16 4 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 5 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 6 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 7 C -0.47 -25.70 9.13 23.47 0.21 -25.48 16 8 H 0.09 4.69 7.86 -2.91 -0.02 4.67 16 9 C 0.25 14.19 6.51 40.21 0.26 14.45 16 10 C -0.31 -15.91 9.83 22.87 0.22 -15.69 16 11 C -0.05 -2.38 10.15 22.40 0.23 -2.15 16 12 C -0.33 -16.82 8.88 22.72 0.20 -16.62 16 13 C 0.34 17.99 7.50 133.23 1.00 18.99 16 14 N -0.64 -27.58 5.20 -308.37 -1.60 -29.19 16 15 C 0.54 20.80 6.39 87.66 0.56 21.36 16 16 O -0.54 -24.09 12.58 -3.00 -0.04 -24.13 16 17 C -0.07 -1.91 0.95 -53.15 -0.05 -1.96 16 18 C -0.08 -2.12 4.86 -19.87 -0.10 -2.22 16 19 C -0.12 -2.70 9.04 22.27 0.20 -2.50 16 20 C -0.12 -2.43 10.05 22.27 0.22 -2.20 16 21 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 22 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 23 C -0.12 -3.49 8.89 22.27 0.20 -3.29 16 24 C -0.11 -2.46 7.07 31.12 0.22 -2.24 16 25 C -0.14 -2.82 7.80 31.12 0.24 -2.58 16 26 C -0.11 -2.41 6.12 31.12 0.19 -2.22 16 27 N -0.53 -30.52 8.03 -186.36 -1.50 -32.02 16 28 H 0.28 13.25 8.29 -92.71 -0.77 12.48 16 29 H 0.11 5.41 8.06 -2.91 -0.02 5.38 16 30 H 0.13 5.36 8.06 -2.91 -0.02 5.33 16 31 H 0.14 6.91 5.21 -7.10 -0.04 6.88 16 32 H 0.41 16.47 6.50 -92.71 -0.60 15.87 16 33 H 0.14 2.67 6.54 -2.91 -0.02 2.65 16 34 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 35 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 37 H 0.11 3.22 6.29 -2.91 -0.02 3.20 16 38 H 0.06 1.56 8.09 -2.39 -0.02 1.54 16 39 H 0.12 2.04 8.10 -2.39 -0.02 2.02 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.12 1.96 6.93 -2.38 -0.02 1.94 16 43 H 0.07 1.80 7.35 -2.39 -0.02 1.79 16 Total: -1.00 -69.76 354.75 4.30 -65.46 By element: Atomic # 1 Polarization: 46.75 SS G_CDS: 0.42 Total: 47.17 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 4.73 Total: -27.61 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -2.85 Total: -100.73 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.04 Total: -24.13 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -69.76 4.30 -65.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882476591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.739 kcal (2) G-P(sol) polarization free energy of solvation -69.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds