Wall clock time and date at job start Tue Mar 31 2020 13:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86796 * 119.99954 * 2 1 4 4 H 1.48502 * 109.47151 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47245 * 299.99528 * 3 2 1 6 6 H 1.48495 * 109.47170 * 59.99913 * 3 2 1 7 7 C 1.40029 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99940 * 179.97438 * 7 2 1 9 9 C 1.41346 * 120.00027 * 0.02562 * 7 2 1 10 10 C 1.40605 * 119.78658 * 179.97438 * 9 7 2 11 11 C 1.38308 * 119.12836 * 179.97438 * 10 9 7 12 12 C 1.38700 * 118.66643 * 359.75333 * 11 10 9 13 13 C 1.39633 * 119.49557 * 0.51939 * 12 11 10 14 14 N 1.39264 * 119.57164 * 179.75014 * 13 12 11 15 15 C 1.34781 * 119.99894 * 185.44549 * 14 13 12 16 16 O 1.21277 * 119.99656 * 5.32236 * 15 14 13 17 17 C 1.50702 * 120.00166 * 185.32874 * 15 14 13 18 18 H 1.09007 * 109.24932 * 25.41284 * 17 15 14 19 19 C 1.52735 * 109.25362 * 144.87586 * 17 15 14 20 20 C 1.53332 * 108.36796 * 171.31917 * 19 17 15 21 21 C 1.52729 * 108.38087 * 290.07804 * 20 19 17 22 22 C 1.50636 * 110.58773 * 51.05719 * 21 20 19 23 23 C 1.38911 * 117.75291 * 162.52756 * 22 21 20 24 24 C 1.37928 * 120.54932 * 179.81010 * 23 22 21 25 25 C 1.38268 * 119.77148 * 359.95662 * 24 23 22 26 26 C 1.37932 * 119.77013 * 0.10580 * 25 24 23 27 27 C 1.37670 * 122.56952 * 342.47100 * 22 21 20 28 28 N 1.31931 * 120.85108 * 359.46486 * 13 12 11 29 29 H 0.96996 * 119.99936 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.43642 * 359.97438 * 10 9 7 31 31 H 1.08003 * 120.66624 * 179.97438 * 11 10 9 32 32 H 1.08000 * 120.24904 * 180.26266 * 12 11 10 33 33 H 0.96999 * 120.00339 * 5.43562 * 14 13 12 34 34 H 1.08994 * 109.68926 * 291.04455 * 19 17 15 35 35 H 1.09002 * 109.67993 * 51.60937 * 19 17 15 36 36 H 1.09002 * 109.68127 * 49.80617 * 20 19 17 37 37 H 1.09005 * 109.67972 * 170.32022 * 20 19 17 38 38 H 1.08998 * 109.25627 * 171.34067 * 21 20 19 39 39 H 1.09002 * 109.25351 * 290.81374 * 21 20 19 40 40 H 1.07995 * 119.72499 * 359.78875 * 23 22 21 41 41 H 1.08003 * 120.11770 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.11910 * 180.12557 * 25 24 23 43 43 H 1.08001 * 119.72706 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3964 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0001 9 6 1.3008 -2.4368 0.0005 10 6 2.0084 -3.6518 0.0005 11 6 1.3031 -4.8416 0.0011 12 6 -0.0830 -4.7934 0.0068 13 6 -0.7279 -3.5549 0.0009 14 7 -2.1196 -3.5047 0.0014 15 6 -2.7512 -2.3197 -0.1150 16 8 -2.1119 -1.3091 -0.3170 17 6 -4.2518 -2.2506 0.0058 18 1 -4.6031 -3.0901 0.6058 19 6 -4.6421 -0.9430 0.6919 20 6 -6.1656 -0.7903 0.6099 21 6 -6.5444 -0.5149 -0.8438 22 6 -5.9192 -1.5369 -1.7569 23 6 -6.4419 -1.6661 -3.0374 24 6 -5.9109 -2.5811 -3.9224 25 6 -4.8489 -3.3763 -3.5330 26 6 -4.3293 -3.2505 -2.2616 27 6 -4.8642 -2.3313 -1.3680 28 7 -0.0357 -2.4317 0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 3.0884 -3.6560 0.0001 31 1 1.8214 -5.7892 0.0007 32 1 -0.6592 -5.7069 0.0117 33 1 -2.6345 -4.3224 0.0854 34 1 -4.3314 -0.9694 1.7363 35 1 -4.1615 -0.1054 0.1863 36 1 -6.6453 -1.7093 0.9465 37 1 -6.4854 0.0418 1.2372 38 1 -7.6287 -0.5564 -0.9468 39 1 -6.1945 0.4786 -1.1244 40 1 -7.2712 -1.0451 -3.3424 41 1 -6.3231 -2.6760 -4.9162 42 1 -4.4275 -4.0932 -4.2221 43 1 -3.5000 -3.8723 -1.9580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882476611.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:34 Heat of formation + Delta-G solvation = 34.459233 kcal Electronic energy + Delta-G solvation = -27043.811436 eV Core-core repulsion = 23439.812938 eV Total energy + Delta-G solvation = -3603.998498 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.44782 -38.86185 -37.43593 -35.76311 -34.07395 -33.03863 -32.47383 -30.29633 -30.16435 -29.23561 -28.60655 -25.60779 -24.30717 -22.70373 -22.53089 -21.69070 -21.03435 -19.58681 -19.00271 -17.72129 -16.62568 -16.20279 -16.04698 -15.33697 -15.30408 -14.68855 -14.45042 -14.30074 -14.03665 -13.67088 -13.49198 -13.21253 -13.06129 -12.93784 -12.68774 -12.44450 -12.09513 -11.86366 -11.78242 -11.53923 -11.32507 -11.14660 -10.93961 -10.84582 -10.63188 -10.54638 -10.46582 -10.24538 -9.90969 -9.64830 -9.07000 -9.01598 -8.64020 -8.39601 -7.95694 -7.21958 -6.93740 -6.13675 -4.38987 1.43126 1.46391 2.77720 3.07429 3.18227 3.21631 3.27104 3.71250 3.73592 3.97690 4.07181 4.65497 4.74701 4.93040 4.97792 5.04468 5.05607 5.16549 5.21794 5.41681 5.46398 5.50908 5.60931 5.71665 5.87873 5.91022 6.00373 6.05004 6.08735 6.11498 6.14523 6.25873 6.49735 6.51486 6.56367 6.62102 6.69941 6.72517 6.84704 6.85854 7.09140 7.25161 7.56139 7.63525 7.82102 8.07828 8.21069 8.47667 8.75962 9.05858 9.27935 10.25724 10.48812 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.004476 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.184259 B = 6254.497510 C = 7324.028836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.656 5.656 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.305 4.305 11 C -0.037 4.037 12 C -0.357 4.357 13 C 0.372 3.628 14 N -0.668 5.668 15 C 0.481 3.519 16 O -0.403 6.403 17 C -0.066 4.066 18 H 0.090 0.910 19 C -0.104 4.104 20 C -0.117 4.117 21 C -0.080 4.080 22 C -0.070 4.070 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.113 4.113 27 C -0.058 4.058 28 N -0.473 5.473 29 H 0.271 0.729 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.397 0.603 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.903 -2.799 -1.908 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.275 5.275 2 C -0.170 4.170 3 Si 0.720 3.280 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.456 4.456 8 H 0.101 0.899 9 C 0.146 3.854 10 C -0.328 4.328 11 C -0.061 4.061 12 C -0.383 4.383 13 C 0.133 3.867 14 N -0.316 5.316 15 C 0.262 3.738 16 O -0.265 6.265 17 C -0.088 4.088 18 H 0.108 0.892 19 C -0.142 4.142 20 C -0.155 4.155 21 C -0.117 4.117 22 C -0.070 4.070 23 C -0.143 4.143 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.132 4.132 27 C -0.058 4.058 28 N -0.192 5.192 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.231 0.769 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.080 -0.993 -2.051 15.251 hybrid contribution 0.615 -0.798 -0.082 1.011 sum -14.464 -1.792 -2.133 14.730 Atomic orbital electron populations 1.70315 1.05812 1.27264 1.24127 1.26163 0.95108 1.00576 0.95199 0.86467 0.80926 0.82262 0.78370 1.18599 1.20064 1.20066 1.19615 0.94075 0.89369 1.42544 0.89950 1.18390 0.87182 0.91955 0.87868 1.21625 0.98540 0.93553 1.19071 1.20559 0.93202 0.96499 0.95826 1.20500 0.94804 0.94963 1.28038 1.18621 0.83368 0.90903 0.93769 1.43585 1.05107 1.09203 1.73696 1.20449 0.88512 0.84696 0.80113 1.91106 1.65049 1.32187 1.38190 1.20265 0.93555 1.00631 0.94313 0.89163 1.21433 0.95160 0.96772 1.00795 1.21552 0.96215 1.01883 0.95812 1.20484 0.99630 0.97619 0.93985 1.19558 0.95771 0.96875 0.94799 1.21076 1.00599 0.99213 0.93405 1.21024 0.97074 0.96669 0.99305 1.21035 0.96837 0.99901 0.96192 1.21322 0.99456 0.98426 0.93959 1.19224 0.95457 0.96263 0.94858 1.68669 1.07003 1.23270 1.20264 0.91711 0.88609 0.88681 0.89150 0.76916 0.91149 0.89743 0.91770 0.91214 0.91005 0.90476 0.86376 0.86336 0.86178 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -18.24 9.10 55.55 0.51 -17.73 16 2 C 0.06 1.55 5.50 -17.34 -0.10 1.46 16 3 Si 0.90 19.43 29.56 -169.99 -5.02 14.41 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.43 -11.80 9.14 -37.73 -0.34 -12.14 16 8 H 0.08 2.15 7.85 -52.48 -0.41 1.73 16 9 C 0.27 7.67 6.55 -85.00 -0.56 7.12 16 10 C -0.30 -7.74 9.83 -38.66 -0.38 -8.12 16 11 C -0.04 -0.84 10.15 -39.38 -0.40 -1.24 16 12 C -0.36 -8.05 9.95 -38.89 -0.39 -8.44 16 13 C 0.37 9.08 7.41 -154.97 -1.15 7.93 16 14 N -0.67 -13.16 4.54 -11.40 -0.05 -13.21 16 15 C 0.48 9.69 5.73 -10.98 -0.06 9.63 16 16 O -0.40 -10.11 12.01 5.56 0.07 -10.04 16 17 C -0.07 -1.00 2.57 -93.09 -0.24 -1.23 16 18 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 19 C -0.10 -1.48 5.06 -26.70 -0.14 -1.61 16 20 C -0.12 -1.26 5.98 -26.70 -0.16 -1.42 16 21 C -0.08 -0.87 5.67 -28.05 -0.16 -1.03 16 22 C -0.07 -0.93 5.74 -104.61 -0.60 -1.53 16 23 C -0.12 -1.50 9.61 -39.45 -0.38 -1.88 16 24 C -0.12 -1.47 10.05 -39.68 -0.40 -1.87 16 25 C -0.12 -1.62 10.05 -39.68 -0.40 -2.02 16 26 C -0.11 -1.71 9.04 -39.45 -0.36 -2.06 16 27 C -0.06 -0.86 5.42 -104.62 -0.57 -1.42 16 28 N -0.47 -13.31 5.74 -10.26 -0.06 -13.36 16 29 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 30 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 31 H 0.10 1.85 8.06 -52.48 -0.42 1.42 16 32 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.40 6.11 8.49 -40.82 -0.35 5.76 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.41 7.50 -51.93 -0.39 1.02 16 36 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.12 1.13 8.05 -52.49 -0.42 0.70 16 41 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.12 1.89 6.41 -52.49 -0.34 1.55 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -32.90 351.39 -11.72 -44.62 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.69 Total: 9.91 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -6.77 Total: -19.89 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.39 Total: -44.31 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.90 -11.72 -44.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882476611.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.083 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds