Wall clock time and date at job start Tue Mar 31 2020 13:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86796 * 119.99954 * 2 1 4 4 H 1.48502 * 109.47151 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47245 * 299.99528 * 3 2 1 6 6 H 1.48495 * 109.47170 * 59.99913 * 3 2 1 7 7 C 1.40029 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99940 * 179.97438 * 7 2 1 9 9 C 1.41346 * 120.00027 * 0.02562 * 7 2 1 10 10 C 1.40605 * 119.78658 * 179.97438 * 9 7 2 11 11 C 1.38308 * 119.12836 * 179.97438 * 10 9 7 12 12 C 1.38700 * 118.66643 * 359.75333 * 11 10 9 13 13 C 1.39633 * 119.49557 * 0.51939 * 12 11 10 14 14 N 1.39264 * 119.57164 * 179.75014 * 13 12 11 15 15 C 1.34781 * 119.99894 * 185.44549 * 14 13 12 16 16 O 1.21277 * 119.99656 * 5.32236 * 15 14 13 17 17 C 1.50702 * 120.00166 * 185.32874 * 15 14 13 18 18 H 1.09007 * 109.24932 * 25.41284 * 17 15 14 19 19 C 1.52735 * 109.25362 * 144.87586 * 17 15 14 20 20 C 1.53332 * 108.36796 * 171.31917 * 19 17 15 21 21 C 1.52729 * 108.38087 * 290.07804 * 20 19 17 22 22 C 1.50636 * 110.58773 * 51.05719 * 21 20 19 23 23 C 1.38911 * 117.75291 * 162.52756 * 22 21 20 24 24 C 1.37928 * 120.54932 * 179.81010 * 23 22 21 25 25 C 1.38268 * 119.77148 * 359.95662 * 24 23 22 26 26 C 1.37932 * 119.77013 * 0.10580 * 25 24 23 27 27 C 1.37670 * 122.56952 * 342.47100 * 22 21 20 28 28 N 1.31931 * 120.85108 * 359.46486 * 13 12 11 29 29 H 0.96996 * 119.99936 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.43642 * 359.97438 * 10 9 7 31 31 H 1.08003 * 120.66624 * 179.97438 * 11 10 9 32 32 H 1.08000 * 120.24904 * 180.26266 * 12 11 10 33 33 H 0.96999 * 120.00339 * 5.43562 * 14 13 12 34 34 H 1.08994 * 109.68926 * 291.04455 * 19 17 15 35 35 H 1.09002 * 109.67993 * 51.60937 * 19 17 15 36 36 H 1.09002 * 109.68127 * 49.80617 * 20 19 17 37 37 H 1.09005 * 109.67972 * 170.32022 * 20 19 17 38 38 H 1.08998 * 109.25627 * 171.34067 * 21 20 19 39 39 H 1.09002 * 109.25351 * 290.81374 * 21 20 19 40 40 H 1.07995 * 119.72499 * 359.78875 * 23 22 21 41 41 H 1.08003 * 120.11770 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.11910 * 180.12557 * 25 24 23 43 43 H 1.08001 * 119.72706 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3964 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0001 9 6 1.3008 -2.4368 0.0005 10 6 2.0084 -3.6518 0.0005 11 6 1.3031 -4.8416 0.0011 12 6 -0.0830 -4.7934 0.0068 13 6 -0.7279 -3.5549 0.0009 14 7 -2.1196 -3.5047 0.0014 15 6 -2.7512 -2.3197 -0.1150 16 8 -2.1119 -1.3091 -0.3170 17 6 -4.2518 -2.2506 0.0058 18 1 -4.6031 -3.0901 0.6058 19 6 -4.6421 -0.9430 0.6919 20 6 -6.1656 -0.7903 0.6099 21 6 -6.5444 -0.5149 -0.8438 22 6 -5.9192 -1.5369 -1.7569 23 6 -6.4419 -1.6661 -3.0374 24 6 -5.9109 -2.5811 -3.9224 25 6 -4.8489 -3.3763 -3.5330 26 6 -4.3293 -3.2505 -2.2616 27 6 -4.8642 -2.3313 -1.3680 28 7 -0.0357 -2.4317 0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 3.0884 -3.6560 0.0001 31 1 1.8214 -5.7892 0.0007 32 1 -0.6592 -5.7069 0.0117 33 1 -2.6345 -4.3224 0.0854 34 1 -4.3314 -0.9694 1.7363 35 1 -4.1615 -0.1054 0.1863 36 1 -6.6453 -1.7093 0.9465 37 1 -6.4854 0.0418 1.2372 38 1 -7.6287 -0.5564 -0.9468 39 1 -6.1945 0.4786 -1.1244 40 1 -7.2712 -1.0451 -3.3424 41 1 -6.3231 -2.6760 -4.9162 42 1 -4.4275 -4.0932 -4.2221 43 1 -3.5000 -3.8723 -1.9580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882476611.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:33 Heat of formation + Delta-G solvation = 17.340039 kcal Electronic energy + Delta-G solvation = -27044.553780 eV Core-core repulsion = 23439.812938 eV Total energy + Delta-G solvation = -3604.740842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70620 -40.41051 -39.11498 -36.84014 -35.89202 -34.87416 -33.62164 -32.22369 -31.19368 -30.89863 -29.82184 -27.52449 -25.56929 -23.94722 -23.58297 -23.36007 -22.68444 -21.05727 -20.20055 -19.53724 -18.02277 -17.90763 -17.35742 -16.55991 -16.38027 -16.31155 -16.24806 -15.63358 -15.53944 -15.16126 -14.76134 -14.61080 -14.56852 -14.16950 -13.93866 -13.90879 -13.62056 -13.25348 -12.96900 -12.91179 -12.74098 -12.58507 -12.54789 -12.33396 -12.30418 -11.84798 -11.76189 -11.58810 -11.50002 -11.23176 -10.88313 -10.65143 -9.91039 -9.67898 -9.48120 -9.09877 -8.81145 -8.07006 -6.43383 0.41130 0.45922 0.90023 1.23787 1.37813 1.49450 1.52569 2.11864 2.24787 2.30568 2.85129 2.97964 3.59912 3.70704 3.86842 3.98356 4.05532 4.08248 4.16259 4.23119 4.32552 4.41780 4.44768 4.53641 4.61625 4.73837 4.74732 4.88188 4.94428 4.96845 5.00990 5.02047 5.05087 5.11184 5.17378 5.26316 5.30802 5.44879 5.58250 5.61338 5.67087 5.71290 5.84232 5.91361 6.11516 6.14491 6.35904 6.72023 6.83411 7.06840 7.67779 8.33660 8.55095 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.004476 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.184259 B = 6254.497510 C = 7324.028836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.691 5.691 2 C 0.012 3.988 3 Si 0.974 3.026 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.466 4.466 8 H 0.085 0.915 9 C 0.237 3.763 10 C -0.329 4.329 11 C -0.034 4.034 12 C -0.347 4.347 13 C 0.349 3.651 14 N -0.657 5.657 15 C 0.476 3.524 16 O -0.457 6.457 17 C -0.052 4.052 18 H 0.117 0.883 19 C -0.103 4.103 20 C -0.108 4.108 21 C -0.080 4.080 22 C -0.079 4.079 23 C -0.126 4.126 24 C -0.122 4.122 25 C -0.134 4.134 26 C -0.138 4.138 27 C -0.079 4.079 28 N -0.507 5.507 29 H 0.269 0.731 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.417 0.583 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.133 0.867 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.150 -3.497 -2.294 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.310 5.310 2 C -0.213 4.213 3 Si 0.795 3.205 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.497 4.497 8 H 0.103 0.897 9 C 0.111 3.889 10 C -0.352 4.352 11 C -0.059 4.059 12 C -0.372 4.372 13 C 0.111 3.889 14 N -0.306 5.306 15 C 0.260 3.740 16 O -0.323 6.323 17 C -0.073 4.073 18 H 0.134 0.866 19 C -0.141 4.141 20 C -0.145 4.145 21 C -0.117 4.117 22 C -0.079 4.079 23 C -0.144 4.144 24 C -0.140 4.140 25 C -0.152 4.152 26 C -0.156 4.156 27 C -0.079 4.079 28 N -0.226 5.226 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.255 0.745 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.091 0.909 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.151 0.849 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.362 -1.753 -2.428 17.619 hybrid contribution 1.247 -0.775 -0.013 1.468 sum -16.115 -2.529 -2.441 16.494 Atomic orbital electron populations 1.70514 1.07328 1.27839 1.25363 1.27019 0.95992 1.03980 0.94350 0.85284 0.79647 0.77168 0.78396 1.17687 1.19800 1.19333 1.19924 0.94416 0.90473 1.44892 0.89685 1.18885 0.87988 0.93388 0.88617 1.21809 0.99190 0.93861 1.20348 1.21030 0.93550 0.97313 0.93968 1.20982 0.95220 0.95741 1.25253 1.19155 0.85226 0.91067 0.93477 1.43589 1.03629 1.10451 1.72938 1.21391 0.90560 0.83815 0.78251 1.91094 1.66794 1.33917 1.40498 1.20202 0.89398 1.02098 0.95645 0.86559 1.21411 0.97892 0.95026 0.99769 1.21530 0.93015 1.03487 0.96449 1.20561 1.01255 0.96557 0.93285 1.19904 0.95339 0.96699 0.95947 1.21474 1.01046 0.99133 0.92723 1.21408 0.96205 0.95760 1.00602 1.21288 0.97464 1.00671 0.95778 1.21372 0.99829 0.99192 0.95187 1.19273 0.96656 0.97423 0.94549 1.68636 1.07302 1.25397 1.21285 0.92025 0.87800 0.84571 0.85181 0.74534 0.91662 0.93100 0.90145 0.89353 0.87937 0.90866 0.83373 0.83465 0.84937 0.87289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -40.61 9.10 21.84 0.20 -40.41 16 2 C 0.01 0.66 5.50 85.29 0.47 1.13 16 3 Si 0.97 41.61 29.56 68.60 2.03 43.64 16 4 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.47 -27.13 9.14 23.47 0.21 -26.92 16 8 H 0.09 4.65 7.85 -2.91 -0.02 4.63 16 9 C 0.24 13.99 6.55 40.21 0.26 14.25 16 10 C -0.33 -17.02 9.83 22.86 0.22 -16.79 16 11 C -0.03 -1.53 10.15 22.40 0.23 -1.31 16 12 C -0.35 -15.17 9.95 22.72 0.23 -14.95 16 13 C 0.35 17.34 7.41 133.23 0.99 18.33 16 14 N -0.66 -26.23 4.54 -308.37 -1.40 -27.63 16 15 C 0.48 19.88 5.73 87.66 0.50 20.38 16 16 O -0.46 -24.33 12.01 -3.02 -0.04 -24.36 16 17 C -0.05 -1.58 2.57 -12.40 -0.03 -1.61 16 18 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 19 C -0.10 -2.95 5.06 30.62 0.15 -2.80 16 20 C -0.11 -2.08 5.98 30.62 0.18 -1.90 16 21 C -0.08 -1.53 5.67 29.74 0.17 -1.37 16 22 C -0.08 -1.94 5.74 -19.86 -0.11 -2.06 16 23 C -0.13 -2.68 9.61 22.36 0.21 -2.46 16 24 C -0.12 -2.63 10.05 22.20 0.22 -2.41 16 25 C -0.13 -3.44 10.05 22.20 0.22 -3.21 16 26 C -0.14 -4.13 9.04 22.36 0.20 -3.93 16 27 C -0.08 -2.30 5.42 -19.86 -0.11 -2.40 16 28 N -0.51 -29.73 5.74 -186.36 -1.07 -30.80 16 29 H 0.27 14.90 8.29 -92.71 -0.77 14.13 16 30 H 0.10 5.01 8.06 -2.91 -0.02 4.99 16 31 H 0.14 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 33 H 0.42 12.60 8.49 -92.71 -0.79 11.81 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.80 7.50 -2.39 -0.02 1.78 16 36 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 37 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.10 1.37 8.13 -2.39 -0.02 1.35 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.15 2.21 8.05 -2.91 -0.02 2.19 16 41 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 43 H 0.11 3.44 6.41 -2.91 -0.02 3.42 16 Total: -1.00 -76.78 351.39 4.20 -72.58 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: 0.25 Total: 37.02 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 4.23 Total: -30.03 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -2.27 Total: -98.84 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.04 Total: -24.36 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -76.78 4.20 -72.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882476611.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.919 kcal (2) G-P(sol) polarization free energy of solvation -76.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds