Wall clock time and date at job start Tue Mar 31 2020 13:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86794 * 120.00184 * 2 1 4 4 H 1.48503 * 109.47540 * 270.00589 * 3 2 1 5 5 H 1.48502 * 109.47382 * 30.00147 * 3 2 1 6 6 H 1.48502 * 109.47113 * 150.00303 * 3 2 1 7 7 C 1.38651 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00211 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99935 * 185.05715 * 9 7 2 11 11 C 1.38882 * 120.06744 * 174.18760 * 10 9 7 12 12 C 1.38104 * 119.92852 * 179.74739 * 11 10 9 13 13 C 1.38296 * 120.06820 * 0.53125 * 12 11 10 14 14 C 1.50705 * 119.92847 * 179.72020 * 13 12 11 15 15 N 1.46496 * 109.47034 * 270.02280 * 14 13 12 16 16 C 1.34778 * 119.99702 * 180.02562 * 15 14 13 17 17 O 1.21586 * 120.00176 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99770 * 179.97438 * 16 15 14 19 19 C 1.47013 * 125.65006 * 0.03274 * 18 16 15 20 20 C 1.54327 * 107.27198 * 178.89888 * 19 18 16 21 21 C 1.55153 * 102.94193 * 337.80350 * 20 19 18 22 22 H 1.09002 * 111.00974 * 277.42803 * 21 20 19 23 23 C 1.53001 * 111.00402 * 153.61307 * 21 20 19 24 24 F 1.39899 * 109.47071 * 180.02562 * 23 21 20 25 25 C 1.47424 * 125.64336 * 179.71614 * 18 16 15 26 26 C 1.38303 * 120.14120 * 359.74604 * 13 12 11 27 27 C 1.38099 * 120.06407 * 359.97438 * 26 13 12 28 28 H 0.97003 * 119.99701 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.03720 * 0.03026 * 11 10 9 30 30 H 1.08007 * 119.96381 * 180.27376 * 12 11 10 31 31 H 1.08997 * 109.46883 * 30.02683 * 14 13 12 32 32 H 1.09001 * 109.46606 * 150.02392 * 14 13 12 33 33 H 0.97001 * 120.00504 * 0.02562 * 15 14 13 34 34 H 1.08999 * 109.88320 * 298.31403 * 19 18 16 35 35 H 1.09000 * 109.88630 * 59.47687 * 19 18 16 36 36 H 1.08997 * 110.72029 * 96.16712 * 20 19 18 37 37 H 1.08999 * 110.71893 * 219.26681 * 20 19 18 38 38 H 1.09004 * 109.46998 * 300.00237 * 23 21 20 39 39 H 1.08995 * 109.46937 * 60.00434 * 23 21 20 40 40 H 1.09003 * 110.37212 * 323.00868 * 25 18 16 41 41 H 1.08998 * 110.36688 * 85.33484 * 25 18 16 42 42 H 1.07996 * 119.96539 * 180.02562 * 26 13 12 43 43 H 1.08007 * 120.03117 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4472 2.6527 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1055 11 6 1.4365 -4.7340 0.2336 12 6 2.1873 -5.8885 0.3360 13 6 3.5685 -5.8204 0.3223 14 6 4.3848 -7.0817 0.4407 15 7 4.6559 -7.3571 1.8538 16 6 5.3752 -8.4421 2.2029 17 8 5.7995 -9.1921 1.3450 18 7 5.6250 -8.6952 3.5029 19 6 5.1749 -7.8756 4.6373 20 6 5.6705 -8.5651 5.9260 21 6 5.8860 -10.0335 5.4735 22 1 4.9481 -10.5887 5.4885 23 6 6.9425 -10.7243 6.3381 24 9 7.1115 -12.0431 5.9031 25 6 6.3894 -9.8435 4.0231 26 6 4.2023 -4.5972 0.2007 27 6 3.4571 -3.4396 0.0921 28 1 -0.4850 0.8401 0.0004 29 1 0.3579 -4.7874 0.2484 30 1 1.6953 -6.8453 0.4312 31 1 3.8310 -7.9148 0.0078 32 1 5.3272 -6.9559 -0.0923 33 1 4.3177 -6.7587 2.5381 34 1 5.6019 -6.8754 4.5644 35 1 4.0865 -7.8167 4.6434 36 1 6.6084 -8.1239 6.2632 37 1 4.9149 -8.5071 6.7094 38 1 7.8886 -10.1897 6.2522 39 1 6.6178 -10.7233 7.3786 40 1 6.1851 -10.7352 3.4304 41 1 7.4565 -9.6215 4.0204 42 1 5.2811 -4.5473 0.1899 43 1 3.9526 -2.4847 -0.0032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883312526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:09 Heat of formation + Delta-G solvation = -105.529283 kcal Electronic energy + Delta-G solvation = -25880.070250 eV Core-core repulsion = 21839.232169 eV Total energy + Delta-G solvation = -4040.838081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.52581 -41.38865 -40.77383 -38.99864 -38.32882 -35.69617 -34.30570 -33.59581 -31.84732 -31.21299 -30.39756 -27.88391 -27.16234 -25.75179 -23.94139 -23.65233 -22.20102 -21.56817 -21.04303 -19.88584 -19.34038 -18.79192 -17.85574 -17.06215 -16.80253 -16.53563 -16.49115 -16.38163 -16.14614 -15.81506 -15.54947 -15.44109 -15.01931 -14.90344 -14.56219 -14.41723 -14.33574 -13.92831 -13.90156 -13.62797 -13.27443 -13.03418 -12.98137 -12.56402 -12.37588 -12.36113 -12.22854 -12.11529 -11.98522 -11.70177 -11.56104 -11.41281 -11.20598 -10.80970 -10.25347 -9.82356 -9.53387 -9.03149 -8.48279 -6.16513 0.50713 0.56905 1.36289 1.43806 1.53229 1.65015 2.07959 2.17195 2.75727 3.02710 3.20872 3.41470 3.47738 3.50017 3.65138 3.85855 4.02173 4.12900 4.16641 4.19925 4.24672 4.41772 4.44700 4.52027 4.55892 4.63174 4.69791 4.71866 4.79820 4.83272 4.93892 5.03016 5.09246 5.14055 5.21701 5.25698 5.31036 5.44645 5.51758 5.68228 5.74572 6.01088 6.01319 6.14746 6.93242 6.96501 7.49368 7.75396 8.74386 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022459 B = 0.002093 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.433320 B =13373.959592 C =13926.276595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.228 6.228 10 C 0.124 3.876 11 C -0.204 4.204 12 C -0.043 4.043 13 C -0.182 4.182 14 C 0.203 3.797 15 N -0.727 5.727 16 C 0.714 3.286 17 O -0.638 6.638 18 N -0.640 5.640 19 C 0.088 3.912 20 C -0.109 4.109 21 C -0.129 4.129 22 H 0.092 0.908 23 C 0.070 3.930 24 F -0.238 7.238 25 C 0.125 3.875 26 C -0.044 4.044 27 C -0.243 4.243 28 H 0.273 0.727 29 H 0.116 0.884 30 H 0.146 0.854 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.406 0.594 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.138 0.862 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.511 -16.025 15.362 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.134 6.134 10 C 0.073 3.927 11 C -0.223 4.223 12 C -0.061 4.061 13 C -0.183 4.183 14 C 0.080 3.920 15 N -0.383 5.383 16 C 0.416 3.584 17 O -0.520 6.520 18 N -0.378 5.378 19 C -0.034 4.034 20 C -0.147 4.147 21 C -0.148 4.148 22 H 0.111 0.889 23 C 0.015 3.985 24 F -0.220 7.220 25 C 0.001 3.999 26 C -0.063 4.063 27 C -0.262 4.262 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.163 0.837 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.242 0.758 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.129 0.871 38 H 0.112 0.888 39 H 0.127 0.873 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.156 0.844 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.388 -16.384 14.613 25.714 hybrid contribution -0.295 1.117 -0.251 1.182 sum 13.094 -15.267 14.362 24.714 Atomic orbital electron populations 1.70183 1.08012 1.28859 1.48550 1.26586 0.96840 1.02765 0.95813 0.84591 0.77878 0.74603 0.79198 1.18994 1.19664 1.17505 1.21830 0.92578 0.81305 1.53196 0.87870 1.83951 1.36035 1.12654 1.80772 1.19984 0.91609 0.87951 0.93188 1.20442 1.00096 0.90361 1.11381 1.20863 0.93011 0.96988 0.95239 1.19457 0.93455 0.93995 1.11410 1.19735 0.98133 0.93513 0.80639 1.45249 1.57087 1.26653 1.09279 1.15661 0.79277 0.81712 0.81775 1.90886 1.59640 1.51623 1.49841 1.47616 1.57577 1.28879 1.03680 1.22299 1.00346 0.95279 0.85441 1.22613 1.04315 0.91761 0.95979 1.22930 1.00318 0.98346 0.93234 0.88924 1.22174 1.00099 0.76852 0.99331 1.92751 1.96968 1.40207 1.92043 1.22130 0.95525 0.87933 0.94272 1.20926 0.99783 0.90682 0.94867 1.21237 0.92996 1.00021 1.11920 0.91803 0.86594 0.83657 0.91293 0.91452 0.75791 0.90397 0.90779 0.88217 0.87061 0.88766 0.87335 0.92630 0.91133 0.84400 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.99 13.67 21.61 0.30 -54.70 16 2 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 3 Si 1.02 41.48 29.55 68.60 2.03 43.51 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 6 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 7 C -0.41 -23.20 9.49 67.92 0.64 -22.55 16 8 H 0.10 5.28 5.20 -2.91 -0.02 5.26 16 9 O -0.23 -13.22 9.76 -22.78 -0.22 -13.44 16 10 C 0.12 5.83 6.65 22.58 0.15 5.98 16 11 C -0.20 -8.11 9.99 22.39 0.22 -7.88 16 12 C -0.04 -1.32 9.69 22.25 0.22 -1.11 16 13 C -0.18 -5.30 5.25 -19.83 -0.10 -5.41 16 14 C 0.20 5.26 5.80 85.64 0.50 5.75 16 15 N -0.73 -17.36 5.51 -482.30 -2.66 -20.02 16 16 C 0.71 19.50 8.49 179.05 1.52 21.02 16 17 O -0.64 -22.96 16.60 -3.99 -0.07 -23.02 16 18 N -0.64 -12.75 3.33 -830.19 -2.76 -15.52 16 19 C 0.09 1.03 6.15 86.73 0.53 1.57 16 20 C -0.11 -0.59 6.42 31.78 0.20 -0.38 16 21 C -0.13 -1.21 3.37 -9.48 -0.03 -1.24 16 22 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 23 C 0.07 0.49 6.98 71.98 0.50 0.99 16 24 F -0.24 -3.69 17.29 44.97 0.78 -2.91 16 25 C 0.12 2.16 6.31 86.78 0.55 2.71 16 26 C -0.04 -1.41 9.69 22.25 0.22 -1.19 16 27 C -0.24 -9.88 9.17 22.39 0.21 -9.67 16 28 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 30 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.07 1.81 8.08 -2.39 -0.02 1.79 16 32 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 33 H 0.41 8.32 7.45 -92.71 -0.69 7.62 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 0.25 8.04 -2.39 -0.02 0.23 16 37 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.09 0.38 8.08 -2.38 -0.02 0.36 16 39 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.06 1.25 8.04 -2.39 -0.02 1.23 16 41 H 0.07 1.15 7.98 -2.39 -0.02 1.13 16 42 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.12 5.04 5.64 -2.91 -0.02 5.02 16 Total: -1.00 -76.83 365.76 3.53 -73.30 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.35 Total: 24.97 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 5.79 Total: -12.17 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -5.12 Total: -90.23 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -0.29 Total: -36.47 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.78 Total: -2.91 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -76.83 3.53 -73.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883312526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.230 kcal (2) G-P(sol) polarization free energy of solvation -76.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds