Wall clock time and date at job start Tue Mar 31 2020 13:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30623 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48493 * 109.47416 * 240.00353 * 3 2 1 5 5 H 1.48501 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46814 * 120.00350 * 3 2 1 7 7 C 1.40275 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00000 * 171.02450 * 7 2 1 9 9 C 1.40894 * 120.00121 * 351.03017 * 7 2 1 10 10 C 1.40702 * 120.32263 * 325.52600 * 9 7 2 11 11 C 1.37598 * 119.87730 * 179.72637 * 10 9 7 12 12 C 1.38826 * 120.57165 * 359.97438 * 11 10 9 13 13 C 1.38220 * 120.67829 * 359.97438 * 12 11 10 14 14 C 1.39222 * 120.08796 * 0.02562 * 13 12 11 15 15 C 1.47432 * 120.28371 * 179.97438 * 14 13 12 16 16 O 1.21606 * 120.00808 * 174.33855 * 15 14 13 17 17 N 1.34779 * 119.99684 * 354.33802 * 15 14 13 18 18 C 1.46500 * 120.00090 * 180.02562 * 17 15 14 19 19 H 1.08996 * 109.25550 * 34.99409 * 18 17 15 20 20 C 1.52715 * 109.25876 * 154.47300 * 18 17 15 21 21 C 1.53309 * 108.45233 * 171.60874 * 20 18 17 22 22 C 1.52763 * 108.32934 * 290.11253 * 21 20 18 23 23 C 1.50492 * 110.55945 * 50.86678 * 22 21 20 24 24 C 1.39189 * 117.97467 * 162.72759 * 23 22 21 25 25 C 1.38412 * 118.86222 * 179.43887 * 24 23 22 26 26 C 1.38237 * 118.84325 * 0.02562 * 25 24 23 27 27 N 1.31507 * 120.61504 * 0.14135 * 26 25 24 28 28 C 1.32703 * 122.40119 * 359.95721 * 27 26 25 29 29 H 0.97000 * 120.00440 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.06478 * 359.74923 * 10 9 7 31 31 H 1.07999 * 119.71488 * 179.97438 * 11 10 9 32 32 H 1.08004 * 119.66026 * 179.97438 * 12 11 10 33 33 H 1.07995 * 119.95754 * 179.97438 * 13 12 11 34 34 H 0.97002 * 120.00189 * 359.97438 * 17 15 14 35 35 H 1.08997 * 109.64426 * 291.26016 * 20 18 17 36 36 H 1.09000 * 109.64306 * 51.88548 * 20 18 17 37 37 H 1.09003 * 109.69593 * 170.40749 * 21 20 18 38 38 H 1.09001 * 109.74016 * 49.83922 * 21 20 18 39 39 H 1.09001 * 109.26217 * 290.58875 * 22 21 20 40 40 H 1.08998 * 109.26394 * 171.14376 * 22 21 20 41 41 H 1.07991 * 120.56514 * 359.41335 * 24 23 22 42 42 H 1.08003 * 120.57223 * 179.97438 * 25 24 23 43 43 H 1.08004 * 119.69114 * 180.12185 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.0939 1.6965 -1.2125 5 1 1.2752 2.7465 0.0006 6 1 3.0940 1.6963 1.2125 7 6 2.0076 -1.2148 -0.0005 8 1 3.0778 -1.2204 -0.1465 9 6 1.3161 -2.4276 0.1892 10 6 0.1985 -2.4822 1.0422 11 6 -0.4734 -3.6703 1.2164 12 6 -0.0589 -4.8192 0.5566 13 6 1.0353 -4.7919 -0.2876 14 6 1.7356 -3.6048 -0.4841 15 6 2.9036 -3.5708 -1.3831 16 8 3.4489 -2.5127 -1.6320 17 7 3.3671 -4.7125 -1.9291 18 6 4.5281 -4.6789 -2.8220 19 1 5.2221 -3.9109 -2.4805 20 6 5.2257 -6.0371 -2.7925 21 6 6.3037 -6.0527 -3.8824 22 6 5.6105 -6.0774 -5.2435 23 6 4.5754 -4.9884 -5.3292 24 6 4.1118 -4.6260 -6.5906 25 6 3.1511 -3.6346 -6.6900 26 6 2.6858 -3.0385 -5.5329 27 7 3.1493 -3.4045 -4.3579 28 6 4.0714 -4.3488 -4.2199 29 1 -0.4851 0.8400 0.0004 30 1 -0.1316 -1.5932 1.5590 31 1 -1.3307 -3.7093 1.8720 32 1 -0.5969 -5.7440 0.7044 33 1 1.3478 -5.6927 -0.7946 34 1 2.9325 -5.5566 -1.7303 35 1 5.6889 -6.1901 -1.8178 36 1 4.4989 -6.8266 -2.9840 37 1 6.9259 -6.9407 -3.7711 38 1 6.9220 -5.1587 -3.8015 39 1 5.1273 -7.0445 -5.3834 40 1 6.3528 -5.9303 -6.0279 41 1 4.4956 -5.1098 -7.4766 42 1 2.7723 -3.3315 -7.6550 43 1 1.9347 -2.2648 -5.5944 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885380316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:33 Heat of formation + Delta-G solvation = 14.269519 kcal Electronic energy + Delta-G solvation = -26877.250283 eV Core-core repulsion = 23272.376293 eV Total energy + Delta-G solvation = -3604.873990 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.60793 -38.63518 -36.99746 -36.20097 -34.05371 -33.50250 -31.90532 -30.40304 -29.96144 -29.56928 -28.19209 -25.32620 -24.12692 -23.24614 -22.65112 -21.58672 -20.69307 -19.95104 -19.13007 -17.46759 -16.72293 -16.35253 -15.97621 -15.81119 -15.16894 -14.94051 -14.24625 -14.20120 -14.01364 -13.62453 -13.52819 -13.38400 -13.04002 -12.79684 -12.61764 -12.59565 -12.38876 -12.04562 -11.77112 -11.47427 -11.35421 -11.03953 -10.92531 -10.90952 -10.62909 -10.59403 -10.42436 -9.95700 -9.58092 -9.52146 -9.16283 -9.05993 -8.66146 -8.28015 -8.12256 -7.47985 -7.23312 -6.68762 -4.26641 1.25756 1.46134 2.50462 2.91067 3.15243 3.21766 3.33015 3.86030 4.06557 4.14614 4.28855 4.43653 4.64714 4.73843 4.81529 4.87845 4.97630 5.05249 5.16755 5.24462 5.45483 5.48623 5.65811 5.68790 5.74956 5.76493 5.83503 5.92485 6.05260 6.07436 6.13397 6.28610 6.32187 6.34839 6.39608 6.72420 6.87627 7.05356 7.20173 7.28008 7.34998 7.56567 7.72828 7.98276 8.09279 8.28255 8.39333 8.54791 8.78388 8.93591 9.01742 9.66196 10.27109 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012903 B = 0.004392 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.586087 B = 6374.041301 C = 7318.775754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.071 3.929 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.414 4.414 8 H 0.103 0.897 9 C 0.146 3.854 10 C -0.149 4.149 11 C -0.097 4.097 12 C -0.248 4.248 13 C -0.059 4.059 14 C -0.253 4.253 15 C 0.574 3.426 16 O -0.519 6.519 17 N -0.738 5.738 18 C 0.202 3.798 19 H 0.099 0.901 20 C -0.124 4.124 21 C -0.117 4.117 22 C -0.074 4.074 23 C -0.133 4.133 24 C -0.087 4.087 25 C -0.180 4.180 26 C 0.102 3.898 27 N -0.441 5.441 28 C 0.124 3.876 29 H 0.281 0.719 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.389 0.611 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.319 -10.641 -9.773 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.147 4.147 3 Si 0.739 3.261 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.442 4.442 8 H 0.121 0.879 9 C 0.142 3.858 10 C -0.168 4.168 11 C -0.116 4.116 12 C -0.267 4.267 13 C -0.078 4.078 14 C -0.258 4.258 15 C 0.367 3.633 16 O -0.395 6.395 17 N -0.392 5.392 18 C 0.096 3.904 19 H 0.117 0.883 20 C -0.163 4.163 21 C -0.155 4.155 22 C -0.112 4.112 23 C -0.136 4.136 24 C -0.113 4.113 25 C -0.200 4.200 26 C -0.058 4.058 27 N -0.148 5.148 28 C -0.014 4.014 29 H 0.091 0.909 30 H 0.134 0.866 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.223 0.777 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.190 -9.248 -9.184 15.393 hybrid contribution 0.029 -0.039 -1.075 1.076 sum 8.218 -9.286 -10.258 16.094 Atomic orbital electron populations 1.69712 1.07704 1.29419 1.35385 1.26070 0.94733 1.01576 0.92289 0.86252 0.79987 0.79649 0.80184 1.18702 1.20598 1.18883 1.20078 0.97254 0.89393 1.37519 0.87903 1.17462 0.89962 0.91347 0.87026 1.21334 0.98638 0.96229 1.00613 1.20773 0.98247 0.93665 0.98918 1.20254 1.02004 0.97365 1.07075 1.20636 0.95257 0.95202 0.96700 1.19513 1.02540 0.96110 1.07620 1.18222 0.83584 0.82455 0.78990 1.90659 1.58826 1.29051 1.61004 1.45954 1.32746 1.10592 1.49879 1.19419 0.88849 0.97578 0.84604 0.88337 1.21823 0.98175 0.96282 0.99988 1.21528 0.97541 1.02750 0.93679 1.20397 0.95913 0.96550 0.98291 1.20472 1.00084 0.99519 0.93520 1.21461 0.96261 0.96625 0.96936 1.22112 0.99170 0.98530 1.00164 1.22808 0.97652 0.97880 0.87477 1.67738 1.08913 1.11201 1.26993 1.21691 0.92570 0.91556 0.95560 0.90867 0.86623 0.89263 0.89326 0.89501 0.77665 0.90172 0.91105 0.90809 0.91162 0.90598 0.90799 0.85434 0.85255 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.31 11.15 55.56 0.62 -20.69 16 2 C 0.07 1.88 5.26 -17.30 -0.09 1.79 16 3 Si 0.91 20.36 29.57 -169.99 -5.03 15.33 16 4 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 6 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.41 -11.67 7.66 -37.81 -0.29 -11.96 16 8 H 0.10 3.00 5.94 -52.48 -0.31 2.69 16 9 C 0.15 4.02 5.50 -106.54 -0.59 3.44 16 10 C -0.15 -3.89 8.61 -38.89 -0.33 -4.22 16 11 C -0.10 -2.26 10.01 -39.60 -0.40 -2.66 16 12 C -0.25 -5.44 10.03 -39.37 -0.39 -5.84 16 13 C -0.06 -1.31 9.52 -39.22 -0.37 -1.68 16 14 C -0.25 -6.37 5.92 -104.37 -0.62 -6.99 16 15 C 0.57 13.66 7.02 -12.52 -0.09 13.57 16 16 O -0.52 -13.99 12.62 5.27 0.07 -13.93 16 17 N -0.74 -13.64 4.89 -56.14 -0.27 -13.91 16 18 C 0.20 3.22 2.63 -69.22 -0.18 3.04 16 19 H 0.10 1.77 7.56 -51.93 -0.39 1.38 16 20 C -0.12 -1.36 5.42 -26.72 -0.14 -1.51 16 21 C -0.12 -1.05 5.98 -26.69 -0.16 -1.21 16 22 C -0.07 -0.68 5.68 -28.11 -0.16 -0.84 16 23 C -0.13 -1.73 5.74 -104.60 -0.60 -2.33 16 24 C -0.09 -1.02 9.75 -39.16 -0.38 -1.40 16 25 C -0.18 -2.28 10.12 -39.52 -0.40 -2.68 16 26 C 0.10 1.66 11.19 -17.69 -0.20 1.47 16 27 N -0.44 -8.64 8.60 -9.51 -0.08 -8.72 16 28 C 0.12 2.05 6.36 -82.43 -0.52 1.53 16 29 H 0.28 6.86 8.29 -40.82 -0.34 6.53 16 30 H 0.12 3.08 6.62 -52.49 -0.35 2.73 16 31 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 33 H 0.09 1.61 6.44 -52.49 -0.34 1.27 16 34 H 0.39 6.31 6.66 -40.82 -0.27 6.04 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 41 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 42 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 43 H 0.15 2.30 8.06 -52.48 -0.42 1.87 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -32.81 351.12 -10.77 -43.58 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -5.44 Total: 11.53 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -5.92 Total: -18.49 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.26 Total: -43.33 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.07 Total: -13.93 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.81 -10.77 -43.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885380316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.852 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds