Wall clock time and date at job start Tue Mar 31 2020 13:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30623 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48493 * 109.47416 * 240.00353 * 3 2 1 5 5 H 1.48501 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46814 * 120.00350 * 3 2 1 7 7 C 1.40275 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00000 * 171.02450 * 7 2 1 9 9 C 1.40894 * 120.00121 * 351.03017 * 7 2 1 10 10 C 1.40702 * 120.32263 * 325.52600 * 9 7 2 11 11 C 1.37598 * 119.87730 * 179.72637 * 10 9 7 12 12 C 1.38826 * 120.57165 * 359.97438 * 11 10 9 13 13 C 1.38220 * 120.67829 * 359.97438 * 12 11 10 14 14 C 1.39222 * 120.08796 * 0.02562 * 13 12 11 15 15 C 1.47432 * 120.28371 * 179.97438 * 14 13 12 16 16 O 1.21606 * 120.00808 * 174.33855 * 15 14 13 17 17 N 1.34779 * 119.99684 * 354.33802 * 15 14 13 18 18 C 1.46500 * 120.00090 * 180.02562 * 17 15 14 19 19 H 1.08996 * 109.25550 * 34.99409 * 18 17 15 20 20 C 1.52715 * 109.25876 * 154.47300 * 18 17 15 21 21 C 1.53309 * 108.45233 * 171.60874 * 20 18 17 22 22 C 1.52763 * 108.32934 * 290.11253 * 21 20 18 23 23 C 1.50492 * 110.55945 * 50.86678 * 22 21 20 24 24 C 1.39189 * 117.97467 * 162.72759 * 23 22 21 25 25 C 1.38412 * 118.86222 * 179.43887 * 24 23 22 26 26 C 1.38237 * 118.84325 * 0.02562 * 25 24 23 27 27 N 1.31507 * 120.61504 * 0.14135 * 26 25 24 28 28 C 1.32703 * 122.40119 * 359.95721 * 27 26 25 29 29 H 0.97000 * 120.00440 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.06478 * 359.74923 * 10 9 7 31 31 H 1.07999 * 119.71488 * 179.97438 * 11 10 9 32 32 H 1.08004 * 119.66026 * 179.97438 * 12 11 10 33 33 H 1.07995 * 119.95754 * 179.97438 * 13 12 11 34 34 H 0.97002 * 120.00189 * 359.97438 * 17 15 14 35 35 H 1.08997 * 109.64426 * 291.26016 * 20 18 17 36 36 H 1.09000 * 109.64306 * 51.88548 * 20 18 17 37 37 H 1.09003 * 109.69593 * 170.40749 * 21 20 18 38 38 H 1.09001 * 109.74016 * 49.83922 * 21 20 18 39 39 H 1.09001 * 109.26217 * 290.58875 * 22 21 20 40 40 H 1.08998 * 109.26394 * 171.14376 * 22 21 20 41 41 H 1.07991 * 120.56514 * 359.41335 * 24 23 22 42 42 H 1.08003 * 120.57223 * 179.97438 * 25 24 23 43 43 H 1.08004 * 119.69114 * 180.12185 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.0939 1.6965 -1.2125 5 1 1.2752 2.7465 0.0006 6 1 3.0940 1.6963 1.2125 7 6 2.0076 -1.2148 -0.0005 8 1 3.0778 -1.2204 -0.1465 9 6 1.3161 -2.4276 0.1892 10 6 0.1985 -2.4822 1.0422 11 6 -0.4734 -3.6703 1.2164 12 6 -0.0589 -4.8192 0.5566 13 6 1.0353 -4.7919 -0.2876 14 6 1.7356 -3.6048 -0.4841 15 6 2.9036 -3.5708 -1.3831 16 8 3.4489 -2.5127 -1.6320 17 7 3.3671 -4.7125 -1.9291 18 6 4.5281 -4.6789 -2.8220 19 1 5.2221 -3.9109 -2.4805 20 6 5.2257 -6.0371 -2.7925 21 6 6.3037 -6.0527 -3.8824 22 6 5.6105 -6.0774 -5.2435 23 6 4.5754 -4.9884 -5.3292 24 6 4.1118 -4.6260 -6.5906 25 6 3.1511 -3.6346 -6.6900 26 6 2.6858 -3.0385 -5.5329 27 7 3.1493 -3.4045 -4.3579 28 6 4.0714 -4.3488 -4.2199 29 1 -0.4851 0.8400 0.0004 30 1 -0.1316 -1.5932 1.5590 31 1 -1.3307 -3.7093 1.8720 32 1 -0.5969 -5.7440 0.7044 33 1 1.3478 -5.6927 -0.7946 34 1 2.9325 -5.5566 -1.7303 35 1 5.6889 -6.1901 -1.8178 36 1 4.4989 -6.8266 -2.9840 37 1 6.9259 -6.9407 -3.7711 38 1 6.9220 -5.1587 -3.8015 39 1 5.1273 -7.0445 -5.3834 40 1 6.3528 -5.9303 -6.0279 41 1 4.4956 -5.1098 -7.4766 42 1 2.7723 -3.3315 -7.6550 43 1 1.9347 -2.2648 -5.5944 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885380316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:32 Heat of formation + Delta-G solvation = -5.760839 kcal Electronic energy + Delta-G solvation = -26878.118865 eV Core-core repulsion = 23272.376293 eV Total energy + Delta-G solvation = -3605.742572 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.74500 -40.36745 -38.60831 -37.50467 -35.70275 -35.14764 -33.23608 -31.77146 -31.40736 -31.34930 -29.47033 -27.24910 -25.24242 -24.33586 -24.05113 -23.11023 -22.45261 -21.17266 -20.62920 -19.35707 -18.13579 -17.58060 -17.39820 -17.13560 -16.90555 -16.21005 -15.95400 -15.50375 -15.38122 -15.01470 -14.91156 -14.63059 -14.49326 -14.46360 -13.98780 -13.77914 -13.73988 -13.39645 -13.33044 -12.87980 -12.82781 -12.75584 -12.48498 -12.31002 -12.15736 -11.86955 -11.76067 -11.53695 -11.45063 -11.12820 -10.57952 -10.33906 -10.08569 -9.76018 -9.68430 -9.36362 -9.18081 -8.64943 -6.32297 0.16940 0.43368 0.59255 1.02727 1.29816 1.41715 1.49447 2.20764 2.45091 2.54933 2.83790 2.94927 3.35980 3.69108 3.80232 3.87247 3.92565 4.06841 4.16981 4.17980 4.31526 4.35123 4.43264 4.53480 4.60247 4.65513 4.74751 4.86163 4.90363 4.92417 5.02902 5.10450 5.12980 5.21479 5.26977 5.29250 5.37165 5.37991 5.40195 5.64304 5.78669 5.84902 5.87385 6.07949 6.12940 6.37398 6.68174 6.85957 6.96695 7.08341 7.26809 7.87564 8.33062 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012903 B = 0.004392 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.586087 B = 6374.041301 C = 7318.775754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.279 1.279 5 H -0.258 1.258 6 H -0.255 1.255 7 C -0.454 4.454 8 H 0.078 0.922 9 C 0.115 3.885 10 C -0.177 4.177 11 C -0.094 4.094 12 C -0.236 4.236 13 C -0.058 4.058 14 C -0.274 4.274 15 C 0.571 3.429 16 O -0.562 6.562 17 N -0.720 5.720 18 C 0.199 3.801 19 H 0.063 0.937 20 C -0.115 4.115 21 C -0.113 4.113 22 C -0.072 4.072 23 C -0.123 4.123 24 C -0.083 4.083 25 C -0.165 4.165 26 C 0.064 3.936 27 N -0.503 5.503 28 C 0.090 3.910 29 H 0.287 0.713 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.401 0.599 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.173 0.827 42 H 0.163 0.837 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.124 -14.360 -11.722 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.182 4.182 3 Si 0.798 3.202 4 H -0.205 1.205 5 H -0.182 1.182 6 H -0.179 1.179 7 C -0.483 4.483 8 H 0.095 0.905 9 C 0.111 3.889 10 C -0.196 4.196 11 C -0.113 4.113 12 C -0.255 4.255 13 C -0.076 4.076 14 C -0.278 4.278 15 C 0.363 3.637 16 O -0.442 6.442 17 N -0.373 5.373 18 C 0.093 3.907 19 H 0.081 0.919 20 C -0.153 4.153 21 C -0.151 4.151 22 C -0.109 4.109 23 C -0.125 4.125 24 C -0.109 4.109 25 C -0.185 4.185 26 C -0.095 4.095 27 N -0.212 5.212 28 C -0.047 4.047 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.138 0.862 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.238 0.762 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.191 0.809 42 H 0.180 0.820 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.989 -13.024 -11.133 19.349 hybrid contribution -0.235 0.893 -0.545 1.073 sum 8.754 -12.131 -11.679 18.978 Atomic orbital electron populations 1.69740 1.08536 1.30416 1.36668 1.26734 0.95586 1.04146 0.91704 0.85359 0.78920 0.76433 0.79507 1.20469 1.18156 1.17944 1.20014 0.96371 0.91167 1.40770 0.90454 1.17844 0.90989 0.92213 0.87854 1.21279 0.99596 0.97136 1.01626 1.21158 0.98403 0.92972 0.98743 1.20777 1.01296 0.98382 1.05082 1.21040 0.94711 0.95431 0.96466 1.19953 1.03478 0.96773 1.07639 1.18211 0.83263 0.83228 0.78995 1.90631 1.60075 1.31032 1.62420 1.45679 1.33099 1.09381 1.49161 1.19679 0.87222 0.99707 0.84111 0.91940 1.21836 0.98761 0.93129 1.01597 1.21560 0.96909 1.03863 0.92770 1.20549 0.95424 0.95880 0.99054 1.20913 0.99704 0.99219 0.92714 1.22001 0.95145 0.95794 0.97977 1.22407 0.98443 0.97668 0.99994 1.22888 0.98948 0.99255 0.88456 1.67559 1.11190 1.13219 1.29195 1.21787 0.93659 0.92605 0.96666 0.90210 0.88306 0.86237 0.85029 0.85470 0.76217 0.89428 0.89486 0.87358 0.92311 0.88223 0.88155 0.80929 0.81953 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.74 11.15 21.88 0.24 -46.49 16 2 C 0.03 1.83 5.26 85.37 0.45 2.27 16 3 Si 0.98 44.47 29.57 68.60 2.03 46.49 16 4 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 7 C -0.45 -27.69 7.66 23.42 0.18 -27.51 16 8 H 0.08 4.97 5.94 -2.91 -0.02 4.95 16 9 C 0.11 6.68 5.50 -21.11 -0.12 6.57 16 10 C -0.18 -9.60 8.61 22.72 0.20 -9.41 16 11 C -0.09 -4.30 10.01 22.26 0.22 -4.08 16 12 C -0.24 -9.77 10.03 22.41 0.22 -9.55 16 13 C -0.06 -2.49 9.52 22.50 0.21 -2.27 16 14 C -0.27 -14.28 5.92 -19.70 -0.12 -14.39 16 15 C 0.57 28.69 7.02 86.66 0.61 29.30 16 16 O -0.56 -32.96 12.62 -4.05 -0.05 -33.01 16 17 N -0.72 -27.21 4.89 -449.79 -2.20 -29.41 16 18 C 0.20 6.47 2.63 44.16 0.12 6.59 16 19 H 0.06 2.44 7.56 -2.39 -0.02 2.42 16 20 C -0.12 -2.27 5.42 30.60 0.17 -2.10 16 21 C -0.11 -1.63 5.98 30.62 0.18 -1.44 16 22 C -0.07 -0.98 5.68 29.70 0.17 -0.81 16 23 C -0.12 -2.88 5.74 -19.85 -0.11 -2.99 16 24 C -0.08 -1.67 9.75 22.54 0.22 -1.45 16 25 C -0.17 -3.94 10.12 22.31 0.23 -3.72 16 26 C 0.06 2.19 11.19 84.74 0.95 3.13 16 27 N -0.50 -20.81 8.60 -184.00 -1.58 -22.39 16 28 C 0.09 3.00 6.36 42.29 0.27 3.27 16 29 H 0.29 14.72 8.29 -92.71 -0.77 13.95 16 30 H 0.10 5.58 6.62 -2.91 -0.02 5.56 16 31 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 32 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 33 H 0.13 4.33 6.44 -2.91 -0.02 4.31 16 34 H 0.40 12.65 6.66 -92.71 -0.62 12.03 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.46 8.10 -2.39 -0.02 1.44 16 37 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.10 0.94 8.13 -2.39 -0.02 0.92 16 41 H 0.17 1.92 8.06 -2.92 -0.02 1.90 16 42 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 43 H 0.14 4.74 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -81.01 351.12 2.91 -78.10 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: 0.43 Total: 35.31 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 4.04 Total: -28.60 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -3.54 Total: -98.29 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.05 Total: -33.01 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -81.01 2.91 -78.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885380316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.338 kcal (2) G-P(sol) polarization free energy of solvation -81.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds