Wall clock time and date at job start Tue Mar 31 2020 13:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86798 * 119.99522 * 2 1 4 4 H 1.48506 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47555 * 299.99867 * 3 2 1 6 6 H 1.48500 * 109.47469 * 60.00173 * 3 2 1 7 7 C 1.40227 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99958 * 197.88381 * 7 2 1 9 9 C 1.41100 * 120.00020 * 17.88546 * 7 2 1 10 10 C 1.40889 * 120.10778 * 204.63367 * 9 7 2 11 11 C 1.36313 * 119.89620 * 180.02562 * 10 9 7 12 12 C 1.40013 * 120.10839 * 0.02562 * 11 10 9 13 13 C 1.47637 * 119.89948 * 179.97438 * 12 11 10 14 14 O 1.21584 * 119.99726 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00120 * 180.02562 * 13 12 11 16 16 C 1.46502 * 119.99959 * 180.02562 * 15 13 12 17 17 H 1.09005 * 109.25512 * 34.46938 * 16 15 13 18 18 C 1.52718 * 109.22696 * 153.92855 * 16 15 13 19 19 C 1.53324 * 108.44270 * 171.56982 * 18 16 15 20 20 C 1.52768 * 108.36097 * 290.17110 * 19 18 16 21 21 C 1.50488 * 110.56198 * 50.86121 * 20 19 18 22 22 C 1.39190 * 117.98277 * 162.40712 * 21 20 19 23 23 C 1.38409 * 118.86823 * 179.76104 * 22 21 20 24 24 C 1.38239 * 118.84480 * 359.94992 * 23 22 21 25 25 N 1.31513 * 120.61040 * 0.12754 * 24 23 22 26 26 C 1.32701 * 122.39864 * 0.04832 * 25 24 23 27 27 C 1.40017 * 120.20483 * 0.25266 * 12 11 10 28 28 C 1.36314 * 120.10840 * 359.48228 * 27 12 11 29 29 H 0.97002 * 120.00313 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.04654 * 0.02562 * 10 9 7 31 31 H 1.07998 * 119.94628 * 180.02562 * 11 10 9 32 32 H 0.97001 * 119.99929 * 359.97438 * 15 13 12 33 33 H 1.09002 * 109.63765 * 51.88707 * 18 16 15 34 34 H 1.08994 * 109.64136 * 291.25861 * 18 16 15 35 35 H 1.08996 * 109.68331 * 170.46104 * 19 18 16 36 36 H 1.08997 * 109.68478 * 49.88990 * 19 18 16 37 37 H 1.09002 * 109.25681 * 171.13697 * 20 19 18 38 38 H 1.08997 * 109.26107 * 290.61333 * 20 19 18 39 39 H 1.08001 * 120.56525 * 359.72986 * 22 21 20 40 40 H 1.07995 * 120.57568 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.69473 * 180.10839 * 24 23 22 42 42 H 1.08004 * 119.94379 * 179.74661 * 27 12 11 43 43 H 1.08002 * 120.05456 * 180.27649 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7004 1.3466 0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0076 -1.2144 0.0005 8 1 3.0485 -1.2368 0.2878 9 6 1.3534 -2.4070 -0.3742 10 6 1.8268 -3.6494 0.0920 11 6 1.1917 -4.7989 -0.2732 12 6 0.0709 -4.7465 -1.1106 13 6 -0.6131 -5.9945 -1.5037 14 8 -0.2026 -7.0656 -1.1006 15 7 -1.6919 -5.9464 -2.3101 16 6 -2.3709 -7.1848 -2.6996 17 1 -2.3269 -7.8942 -1.8732 18 6 -3.8317 -6.8773 -3.0222 19 6 -4.4695 -8.1333 -3.6275 20 6 -3.8726 -8.3546 -5.0163 21 6 -2.3693 -8.3193 -4.9573 22 6 -1.6609 -8.8619 -6.0255 23 6 -0.2775 -8.8347 -5.9925 24 6 0.3526 -8.2684 -4.9001 25 7 -0.3496 -7.7664 -3.9079 26 6 -1.6765 -7.7761 -3.8997 27 6 -0.3999 -3.5147 -1.5812 28 6 0.2253 -2.3594 -1.2171 29 1 -0.4851 0.8400 -0.0004 30 1 2.6916 -3.6908 0.7376 31 1 1.5537 -5.7517 0.0840 32 1 -2.0192 -5.0919 -2.6319 33 1 -3.8838 -6.0580 -3.7393 34 1 -4.3587 -6.6027 -2.1085 35 1 -5.5475 -7.9947 -3.7091 36 1 -4.2562 -8.9948 -2.9947 37 1 -4.1948 -9.3243 -5.3957 38 1 -4.2241 -7.5711 -5.6877 39 1 -2.1818 -9.2973 -6.8654 40 1 0.2997 -9.2482 -6.8063 41 1 1.4315 -8.2382 -4.8610 42 1 -1.2624 -3.4795 -2.2302 43 1 -0.1412 -1.4094 -1.5769 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885388881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:21 Heat of formation + Delta-G solvation = 3.983202 kcal Electronic energy + Delta-G solvation = -26060.524206 eV Core-core repulsion = 22455.204168 eV Total energy + Delta-G solvation = -3605.320038 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.74457 -38.78966 -37.19289 -36.48152 -34.15228 -33.78397 -32.09202 -30.52209 -30.23152 -29.36615 -28.57026 -25.79878 -24.19199 -23.36264 -22.61206 -21.49368 -20.82381 -20.05669 -19.37514 -17.46555 -17.10139 -16.52478 -16.25548 -15.98243 -15.43288 -15.09603 -14.34286 -14.25190 -13.94811 -13.74685 -13.63351 -13.52975 -13.15174 -12.92102 -12.75629 -12.68217 -12.49303 -12.09114 -11.87818 -11.80461 -11.47229 -11.29578 -11.21371 -11.01220 -10.87734 -10.76714 -10.56868 -9.96039 -9.65241 -9.49484 -9.28549 -9.24987 -8.85546 -8.67365 -8.46016 -7.64131 -7.45712 -6.97269 -4.53114 1.12478 1.32865 2.34655 2.95140 2.98402 3.04028 3.10833 3.70083 3.78778 3.98918 4.00510 4.28075 4.50499 4.63607 4.69502 4.77304 4.86854 4.95031 5.03635 5.13744 5.35946 5.39181 5.56247 5.59539 5.65250 5.66300 5.73297 5.80825 5.95699 6.03347 6.11119 6.16463 6.22757 6.28805 6.40606 6.73623 6.83517 6.89370 7.05063 7.15055 7.21373 7.51161 7.73808 7.87912 7.93480 8.14595 8.22614 8.39289 8.47153 8.70462 8.83032 9.30504 9.95015 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020322 B = 0.002830 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.505334 B = 9890.409228 C =10222.958516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.446 4.446 8 H 0.084 0.916 9 C 0.128 3.872 10 C -0.239 4.239 11 C -0.023 4.023 12 C -0.276 4.276 13 C 0.582 3.418 14 O -0.558 6.558 15 N -0.731 5.731 16 C 0.201 3.799 17 H 0.100 0.900 18 C -0.126 4.126 19 C -0.117 4.117 20 C -0.075 4.075 21 C -0.130 4.130 22 C -0.085 4.085 23 C -0.178 4.178 24 C 0.100 3.900 25 N -0.447 5.447 26 C 0.123 3.877 27 C -0.064 4.064 28 C -0.178 4.178 29 H 0.285 0.715 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.395 0.605 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.152 0.848 42 H 0.087 0.913 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.852 -10.486 -11.326 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.474 4.474 8 H 0.102 0.898 9 C 0.125 3.875 10 C -0.259 4.259 11 C -0.042 4.042 12 C -0.280 4.280 13 C 0.376 3.624 14 O -0.438 6.438 15 N -0.383 5.383 16 C 0.095 3.905 17 H 0.117 0.883 18 C -0.165 4.165 19 C -0.155 4.155 20 C -0.113 4.113 21 C -0.133 4.133 22 C -0.111 4.111 23 C -0.198 4.198 24 C -0.060 4.060 25 N -0.155 5.155 26 C -0.014 4.014 27 C -0.083 4.083 28 C -0.198 4.198 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.230 0.770 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.169 0.831 42 H 0.105 0.895 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.321 -10.710 -10.278 17.017 hybrid contribution -0.128 0.795 -1.087 1.353 sum -8.448 -9.915 -11.365 17.287 Atomic orbital electron populations 1.69756 1.07872 1.29765 1.32419 1.26073 0.94783 1.01778 0.91942 0.86201 0.81143 0.80375 0.78775 1.18113 1.19460 1.19739 1.19840 0.98406 0.91205 1.37951 0.89810 1.17768 0.90388 0.92147 0.87205 1.20712 1.04583 0.92699 1.07860 1.20352 0.92964 0.97065 0.93806 1.18949 1.04205 0.91157 1.13689 1.18388 0.78352 0.89402 0.76232 1.90614 1.65211 1.31523 1.56453 1.45804 1.32375 1.07513 1.52640 1.19472 0.89560 0.88341 0.93152 0.88271 1.21848 0.93899 0.98613 1.02095 1.21531 0.99968 0.98128 0.95853 1.20417 0.90231 1.02421 0.98212 1.20483 0.96902 1.00696 0.95203 1.21491 0.94241 0.97729 0.97675 1.22116 0.95278 1.02138 1.00292 1.22778 1.00471 0.93596 0.89145 1.67685 1.07549 1.13973 1.26266 1.21630 0.89957 0.95012 0.94842 1.20472 0.97423 0.92675 0.97772 1.20960 0.99985 0.96845 1.01977 0.90429 0.88515 0.88164 0.76993 0.90912 0.90015 0.90647 0.91169 0.90666 0.90432 0.85278 0.85136 0.83052 0.89534 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.87 10.96 55.56 0.61 -18.26 16 2 C 0.07 1.78 5.13 -17.31 -0.09 1.69 16 3 Si 0.91 17.62 29.60 -169.99 -5.03 12.58 16 4 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.45 -11.36 9.04 -37.75 -0.34 -11.70 16 8 H 0.08 2.05 7.91 -52.49 -0.42 1.63 16 9 C 0.13 3.34 5.57 -106.80 -0.60 2.75 16 10 C -0.24 -5.96 9.73 -39.27 -0.38 -6.34 16 11 C -0.02 -0.55 9.52 -39.61 -0.38 -0.93 16 12 C -0.28 -6.52 5.89 -104.73 -0.62 -7.13 16 13 C 0.58 12.83 7.08 -12.42 -0.09 12.75 16 14 O -0.56 -13.71 15.38 5.29 0.08 -13.63 16 15 N -0.73 -12.85 4.88 -56.07 -0.27 -13.12 16 16 C 0.20 3.01 2.63 -69.21 -0.18 2.82 16 17 H 0.10 1.66 7.55 -51.93 -0.39 1.27 16 18 C -0.13 -1.32 5.42 -26.71 -0.14 -1.46 16 19 C -0.12 -0.97 5.98 -26.68 -0.16 -1.13 16 20 C -0.08 -0.63 5.68 -28.11 -0.16 -0.79 16 21 C -0.13 -1.55 5.74 -104.60 -0.60 -2.15 16 22 C -0.09 -0.91 9.75 -39.17 -0.38 -1.29 16 23 C -0.18 -2.01 10.12 -39.52 -0.40 -2.41 16 24 C 0.10 1.44 11.19 -17.69 -0.20 1.24 16 25 N -0.45 -7.93 8.66 -9.51 -0.08 -8.01 16 26 C 0.12 1.88 6.36 -82.43 -0.52 1.36 16 27 C -0.06 -1.47 9.47 -39.61 -0.38 -1.84 16 28 C -0.18 -4.48 8.64 -39.27 -0.34 -4.82 16 29 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 30 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 31 H 0.10 2.38 7.63 -52.49 -0.40 1.98 16 32 H 0.39 6.29 6.60 -40.82 -0.27 6.02 16 33 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 37 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.09 1.69 6.37 -52.48 -0.33 1.36 16 43 H 0.12 3.01 6.16 -52.49 -0.32 2.69 16 LS Contribution 355.25 15.07 5.35 5.35 Total: -1.00 -31.23 355.25 -10.79 -42.02 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -5.49 Total: 12.47 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -5.95 Total: -19.39 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.25 Total: -39.40 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.08 Total: -13.63 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.23 -10.79 -42.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885388881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.999 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds