Wall clock time and date at job start Tue Mar 31 2020 13:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00068 * 2 1 4 4 H 1.48503 * 109.47045 * 275.29433 * 3 2 1 5 5 H 1.48502 * 109.47237 * 35.29354 * 3 2 1 6 6 H 1.48499 * 109.47154 * 155.29550 * 3 2 1 7 7 C 1.39947 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99754 * 346.77967 * 7 2 1 9 9 C 1.41399 * 119.99526 * 166.77766 * 7 2 1 10 10 C 1.40727 * 120.24783 * 331.08538 * 9 7 2 11 11 C 1.37597 * 119.74576 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24717 * 359.73180 * 11 10 9 13 13 C 1.38609 * 120.49772 * 0.54957 * 12 11 10 14 14 C 1.37638 * 120.25217 * 359.44702 * 13 12 11 15 15 C 1.50694 * 120.12762 * 180.29173 * 14 13 12 16 16 C 1.50699 * 109.47653 * 265.00494 * 15 14 13 17 17 O 1.21284 * 119.99661 * 359.97438 * 16 15 14 18 18 N 1.34770 * 120.00433 * 180.02562 * 16 15 14 19 19 C 1.39955 * 120.00573 * 174.63742 * 18 16 15 20 20 C 1.39279 * 120.48374 * 342.20280 * 19 18 16 21 21 C 1.38501 * 118.35964 * 179.97438 * 20 19 18 22 22 C 1.38267 * 119.23802 * 0.02562 * 21 20 19 23 23 N 1.31863 * 120.91778 * 359.97438 * 22 21 20 24 24 C 1.31816 * 121.79475 * 359.74853 * 23 22 21 25 25 C 1.50700 * 119.66978 * 180.29245 * 24 23 22 26 26 C 1.53003 * 117.49610 * 8.86596 * 25 24 23 27 27 C 1.53002 * 117.49369 * 300.24567 * 25 24 23 28 28 H 0.97007 * 119.99697 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.12781 * 0.02562 * 10 9 7 30 30 H 1.08005 * 119.87514 * 179.97438 * 11 10 9 31 31 H 1.07998 * 119.74679 * 180.30165 * 12 11 10 32 32 H 1.08004 * 119.86941 * 179.72383 * 13 12 11 33 33 H 1.08998 * 109.47429 * 25.00522 * 15 14 13 34 34 H 1.09006 * 109.47021 * 145.00203 * 15 14 13 35 35 H 0.97001 * 119.99943 * 354.63266 * 18 16 15 36 36 H 1.08005 * 120.82089 * 359.97438 * 20 19 18 37 37 H 1.08003 * 120.38285 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.54145 * 179.97438 * 22 21 20 39 39 H 1.08995 * 115.55105 * 154.57959 * 25 24 23 40 40 H 1.08991 * 117.50167 * 0.02562 * 26 25 24 41 41 H 1.08997 * 117.49492 * 145.02394 * 26 25 24 42 42 H 1.09006 * 117.49573 * 214.97938 * 27 25 24 43 43 H 1.08993 * 117.50124 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3779 2.1110 -1.3941 5 1 1.5002 2.6178 0.8089 6 1 3.5913 1.4105 0.5851 7 6 2.0079 -1.2120 -0.0005 8 1 1.4894 -2.1349 0.2129 9 6 3.3938 -1.2280 -0.2807 10 6 3.9599 -0.2459 -1.1145 11 6 5.3097 -0.2716 -1.3807 12 6 6.1123 -1.2571 -0.8262 13 6 5.5644 -2.2328 -0.0081 14 6 4.2168 -2.2265 0.2718 15 6 3.6254 -3.2848 1.1669 16 6 3.0781 -4.4076 0.3237 17 8 3.1600 -4.3535 -0.8852 18 7 2.4969 -5.4713 0.9127 19 6 1.8893 -6.4595 0.1299 20 6 1.5473 -6.2003 -1.1951 21 6 0.9484 -7.2102 -1.9297 22 6 0.7108 -8.4326 -1.3287 23 7 1.0467 -8.6462 -0.0716 24 6 1.6234 -7.7145 0.6611 25 6 1.9931 -8.0127 2.0913 26 6 1.8666 -9.4616 2.5662 27 6 0.8641 -8.4095 3.0447 28 1 -0.4850 0.8401 0.0004 29 1 3.3374 0.5250 -1.5440 30 1 5.7463 0.4809 -2.0207 31 1 7.1715 -1.2667 -1.0365 32 1 6.1983 -2.9982 0.4148 33 1 4.3979 -3.6724 1.8309 34 1 2.8207 -2.8505 1.7602 35 1 2.4998 -5.5520 1.8794 36 1 1.7443 -5.2355 -1.6389 37 1 0.6700 -7.0449 -2.9600 38 1 0.2437 -9.2234 -1.8968 39 1 2.8107 -7.4185 2.4992 40 1 1.5165 -10.1992 1.8442 41 1 2.6014 -9.8210 3.2867 42 1 0.9393 -8.0767 4.0800 43 1 -0.1460 -8.4544 2.6376 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889882768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:21 Heat of formation + Delta-G solvation = 49.110199 kcal Electronic energy + Delta-G solvation = -26287.059135 eV Core-core repulsion = 22683.695950 eV Total energy + Delta-G solvation = -3603.363185 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.85874 -39.21178 -37.72418 -36.90318 -34.78256 -33.63597 -32.25907 -31.56837 -30.42018 -29.87115 -27.02500 -24.96146 -24.75476 -23.26028 -22.39864 -21.52126 -20.76626 -20.63827 -19.56772 -17.96767 -17.38193 -16.84496 -16.43697 -15.77999 -15.67543 -15.22084 -14.94521 -14.50245 -14.20886 -14.06563 -13.84980 -13.56026 -13.48727 -13.05120 -12.74406 -12.62771 -12.21926 -11.97571 -11.66364 -11.57355 -11.51173 -11.35071 -10.89266 -10.85935 -10.77230 -10.73844 -10.59337 -10.27438 -9.81336 -9.70210 -9.62638 -9.33141 -9.17859 -8.93371 -7.92911 -7.63647 -7.58083 -6.96706 -4.54426 1.14458 1.45471 2.48671 2.67185 3.03031 3.09058 3.17111 3.29012 3.31960 3.60040 3.94648 4.11548 4.22105 4.47763 4.56049 4.74991 4.95785 4.97511 5.16879 5.23642 5.35877 5.43665 5.54698 5.55648 5.58207 5.73751 5.78261 5.86904 5.95202 6.02278 6.10594 6.11550 6.18637 6.22145 6.42413 6.47124 6.51723 6.63635 6.89561 6.99166 7.15195 7.35682 7.57168 7.61606 7.69654 7.83793 8.06313 8.08112 8.29153 8.49182 8.61220 8.76611 10.05147 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015507 B = 0.003538 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.238776 B = 7911.535904 C = 8297.062543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.083 3.917 3 Si 0.913 3.087 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.240 1.240 7 C -0.441 4.441 8 H 0.088 0.912 9 C 0.110 3.890 10 C -0.233 4.233 11 C -0.078 4.078 12 C -0.242 4.242 13 C -0.066 4.066 14 C -0.172 4.172 15 C -0.072 4.072 16 C 0.515 3.485 17 O -0.496 6.496 18 N -0.672 5.672 19 C 0.125 3.875 20 C -0.099 4.099 21 C -0.152 4.152 22 C 0.066 3.934 23 N -0.465 5.465 24 C 0.115 3.885 25 C -0.118 4.118 26 C -0.155 4.155 27 C -0.161 4.161 28 H 0.285 0.715 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.410 0.590 36 H 0.171 0.829 37 H 0.135 0.865 38 H 0.153 0.847 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.987 -12.179 4.943 13.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.163 1.163 7 C -0.470 4.470 8 H 0.106 0.894 9 C 0.107 3.893 10 C -0.252 4.252 11 C -0.096 4.096 12 C -0.261 4.261 13 C -0.084 4.084 14 C -0.174 4.174 15 C -0.112 4.112 16 C 0.304 3.696 17 O -0.369 6.369 18 N -0.317 5.317 19 C 0.026 3.974 20 C -0.127 4.127 21 C -0.173 4.173 22 C -0.093 4.093 23 N -0.173 5.173 24 C -0.026 4.026 25 C -0.137 4.137 26 C -0.192 4.192 27 C -0.199 4.199 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.246 0.754 36 H 0.188 0.812 37 H 0.153 0.847 38 H 0.170 0.830 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.632 -12.753 4.474 13.613 hybrid contribution 0.302 1.597 -0.183 1.635 sum 1.933 -11.156 4.291 12.108 Atomic orbital electron populations 1.69668 1.08008 1.30195 1.35606 1.26179 0.94797 1.01733 0.90901 0.86312 0.81272 0.79662 0.78710 1.19917 1.22209 1.16335 1.19440 0.91491 0.95303 1.40764 0.89403 1.17475 0.92903 0.90261 0.88704 1.20927 0.94964 1.03517 1.05768 1.20594 0.93872 0.97149 0.97993 1.20330 0.97843 1.00370 1.07582 1.20432 0.94143 0.96699 0.97152 1.18964 0.92782 1.00334 1.05347 1.20318 1.01256 0.92272 0.97311 1.21509 0.76419 0.81990 0.89642 1.90578 1.54143 1.77429 1.14736 1.43808 1.55890 1.21694 1.10269 1.18641 0.96675 0.89176 0.92869 1.22348 0.95407 1.02170 0.92791 1.22102 0.99605 0.94156 1.01393 1.22511 0.99326 0.96609 0.90824 1.67215 1.10684 1.32619 1.06796 1.19930 0.99554 0.87961 0.95120 1.20781 1.01918 1.00740 0.90249 1.22904 1.01889 0.91495 1.02911 1.22980 0.95244 1.03273 0.98416 0.90472 0.88495 0.88942 0.88927 0.89032 0.89831 0.87577 0.75390 0.81175 0.84716 0.83018 0.86722 0.87435 0.88783 0.88364 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.26 13.93 55.55 0.77 -20.49 16 2 C 0.08 2.12 5.47 -17.34 -0.09 2.02 16 3 Si 0.91 20.54 24.37 -169.99 -4.14 16.39 16 4 H -0.27 -6.06 6.77 56.52 0.38 -5.68 16 5 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.24 -5.47 6.49 56.52 0.37 -5.10 16 7 C -0.44 -11.49 8.63 -37.74 -0.33 -11.81 16 8 H 0.09 2.39 6.95 -52.49 -0.36 2.03 16 9 C 0.11 2.71 5.18 -106.83 -0.55 2.15 16 10 C -0.23 -5.64 6.92 -38.88 -0.27 -5.91 16 11 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 12 C -0.24 -5.05 10.05 -39.29 -0.39 -5.44 16 13 C -0.07 -1.36 9.66 -39.66 -0.38 -1.75 16 14 C -0.17 -3.78 4.43 -103.92 -0.46 -4.24 16 15 C -0.07 -1.28 5.19 -29.04 -0.15 -1.43 16 16 C 0.52 9.47 7.32 -10.99 -0.08 9.39 16 17 O -0.50 -11.00 12.90 5.55 0.07 -10.93 16 18 N -0.67 -10.04 5.19 -9.77 -0.05 -10.09 16 19 C 0.13 1.98 6.52 -83.54 -0.54 1.44 16 20 C -0.10 -1.69 8.92 -39.10 -0.35 -2.03 16 21 C -0.15 -2.13 10.10 -39.47 -0.40 -2.53 16 22 C 0.07 0.85 11.18 -17.53 -0.20 0.66 16 23 N -0.46 -6.60 9.33 -9.32 -0.09 -6.69 16 24 C 0.12 1.64 6.46 -82.37 -0.53 1.10 16 25 C -0.12 -1.31 5.43 -91.77 -0.50 -1.81 16 26 C -0.15 -1.50 10.02 -26.73 -0.27 -1.77 16 27 C -0.16 -1.56 10.23 -26.73 -0.27 -1.83 16 28 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 29 H 0.10 2.35 4.24 -52.49 -0.22 2.13 16 30 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.09 1.63 8.06 -52.48 -0.42 1.20 16 33 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 34 H 0.11 1.88 7.11 -51.93 -0.37 1.51 16 35 H 0.41 4.69 7.15 -40.82 -0.29 4.40 16 36 H 0.17 3.35 5.41 -52.48 -0.28 3.06 16 37 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 38 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.11 1.09 7.03 -51.93 -0.37 0.72 16 40 H 0.11 1.16 7.57 -51.93 -0.39 0.77 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -30.47 354.34 -9.55 -40.02 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.28 Total: 12.34 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -6.17 Total: -25.88 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.64 Total: -37.27 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.14 Total: 16.39 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.47 -9.55 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889882768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.126 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds