Wall clock time and date at job start Tue Mar 31 2020 13:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00068 * 2 1 4 4 H 1.48503 * 109.47045 * 275.29433 * 3 2 1 5 5 H 1.48502 * 109.47237 * 35.29354 * 3 2 1 6 6 H 1.48499 * 109.47154 * 155.29550 * 3 2 1 7 7 C 1.39947 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99754 * 346.77967 * 7 2 1 9 9 C 1.41399 * 119.99526 * 166.77766 * 7 2 1 10 10 C 1.40727 * 120.24783 * 331.08538 * 9 7 2 11 11 C 1.37597 * 119.74576 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24717 * 359.73180 * 11 10 9 13 13 C 1.38609 * 120.49772 * 0.54957 * 12 11 10 14 14 C 1.37638 * 120.25217 * 359.44702 * 13 12 11 15 15 C 1.50694 * 120.12762 * 180.29173 * 14 13 12 16 16 C 1.50699 * 109.47653 * 265.00494 * 15 14 13 17 17 O 1.21284 * 119.99661 * 359.97438 * 16 15 14 18 18 N 1.34770 * 120.00433 * 180.02562 * 16 15 14 19 19 C 1.39955 * 120.00573 * 174.63742 * 18 16 15 20 20 C 1.39279 * 120.48374 * 342.20280 * 19 18 16 21 21 C 1.38501 * 118.35964 * 179.97438 * 20 19 18 22 22 C 1.38267 * 119.23802 * 0.02562 * 21 20 19 23 23 N 1.31863 * 120.91778 * 359.97438 * 22 21 20 24 24 C 1.31816 * 121.79475 * 359.74853 * 23 22 21 25 25 C 1.50700 * 119.66978 * 180.29245 * 24 23 22 26 26 C 1.53003 * 117.49610 * 8.86596 * 25 24 23 27 27 C 1.53002 * 117.49369 * 300.24567 * 25 24 23 28 28 H 0.97007 * 119.99697 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.12781 * 0.02562 * 10 9 7 30 30 H 1.08005 * 119.87514 * 179.97438 * 11 10 9 31 31 H 1.07998 * 119.74679 * 180.30165 * 12 11 10 32 32 H 1.08004 * 119.86941 * 179.72383 * 13 12 11 33 33 H 1.08998 * 109.47429 * 25.00522 * 15 14 13 34 34 H 1.09006 * 109.47021 * 145.00203 * 15 14 13 35 35 H 0.97001 * 119.99943 * 354.63266 * 18 16 15 36 36 H 1.08005 * 120.82089 * 359.97438 * 20 19 18 37 37 H 1.08003 * 120.38285 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.54145 * 179.97438 * 22 21 20 39 39 H 1.08995 * 115.55105 * 154.57959 * 25 24 23 40 40 H 1.08991 * 117.50167 * 0.02562 * 26 25 24 41 41 H 1.08997 * 117.49492 * 145.02394 * 26 25 24 42 42 H 1.09006 * 117.49573 * 214.97938 * 27 25 24 43 43 H 1.08993 * 117.50124 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3779 2.1110 -1.3941 5 1 1.5002 2.6178 0.8089 6 1 3.5913 1.4105 0.5851 7 6 2.0079 -1.2120 -0.0005 8 1 1.4894 -2.1349 0.2129 9 6 3.3938 -1.2280 -0.2807 10 6 3.9599 -0.2459 -1.1145 11 6 5.3097 -0.2716 -1.3807 12 6 6.1123 -1.2571 -0.8262 13 6 5.5644 -2.2328 -0.0081 14 6 4.2168 -2.2265 0.2718 15 6 3.6254 -3.2848 1.1669 16 6 3.0781 -4.4076 0.3237 17 8 3.1600 -4.3535 -0.8852 18 7 2.4969 -5.4713 0.9127 19 6 1.8893 -6.4595 0.1299 20 6 1.5473 -6.2003 -1.1951 21 6 0.9484 -7.2102 -1.9297 22 6 0.7108 -8.4326 -1.3287 23 7 1.0467 -8.6462 -0.0716 24 6 1.6234 -7.7145 0.6611 25 6 1.9931 -8.0127 2.0913 26 6 1.8666 -9.4616 2.5662 27 6 0.8641 -8.4095 3.0447 28 1 -0.4850 0.8401 0.0004 29 1 3.3374 0.5250 -1.5440 30 1 5.7463 0.4809 -2.0207 31 1 7.1715 -1.2667 -1.0365 32 1 6.1983 -2.9982 0.4148 33 1 4.3979 -3.6724 1.8309 34 1 2.8207 -2.8505 1.7602 35 1 2.4998 -5.5520 1.8794 36 1 1.7443 -5.2355 -1.6389 37 1 0.6700 -7.0449 -2.9600 38 1 0.2437 -9.2234 -1.8968 39 1 2.8107 -7.4185 2.4992 40 1 1.5165 -10.1992 1.8442 41 1 2.6014 -9.8210 3.2867 42 1 0.9393 -8.0767 4.0800 43 1 -0.1460 -8.4544 2.6376 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889882768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:21 Heat of formation + Delta-G solvation = 31.741258 kcal Electronic energy + Delta-G solvation = -26287.812309 eV Core-core repulsion = 22683.695950 eV Total energy + Delta-G solvation = -3604.116359 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.07252 -40.57967 -39.36381 -37.76852 -36.11179 -35.49802 -33.77397 -32.77194 -32.21197 -31.11487 -28.56932 -26.74384 -25.81660 -24.48194 -23.28046 -23.14397 -22.13504 -21.74455 -21.10771 -19.31506 -19.12147 -18.14168 -17.64756 -17.37330 -16.88239 -16.52084 -16.18296 -16.00958 -15.67013 -15.48633 -15.25693 -14.97353 -14.73464 -14.51134 -14.23761 -13.87531 -13.76574 -13.72337 -13.15569 -12.86046 -12.70296 -12.58349 -12.51192 -12.31436 -12.07322 -11.96902 -11.75935 -11.52444 -11.41972 -11.38976 -11.09320 -10.97889 -10.49116 -10.18986 -9.41089 -9.31105 -9.09350 -8.86557 -6.47679 0.01914 0.24631 0.77292 0.89605 1.26577 1.39393 1.48428 1.65318 2.03308 2.12055 2.64107 2.65558 3.13654 3.26546 3.48920 3.60685 3.79545 3.95027 4.07087 4.14939 4.18313 4.24452 4.25800 4.33666 4.41918 4.49242 4.55481 4.60488 4.70464 4.84646 4.89338 4.94551 4.95194 5.09090 5.14174 5.14604 5.26492 5.30547 5.35628 5.38147 5.65261 5.80072 5.84798 5.92649 6.03834 6.26845 6.37387 6.44855 6.77498 6.89043 6.95376 7.14283 8.20878 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015507 B = 0.003538 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.238776 B = 7911.535904 C = 8297.062543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.045 3.955 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.465 4.465 8 H 0.058 0.942 9 C 0.085 3.915 10 C -0.257 4.257 11 C -0.090 4.090 12 C -0.230 4.230 13 C -0.075 4.075 14 C -0.174 4.174 15 C -0.071 4.071 16 C 0.515 3.485 17 O -0.543 6.543 18 N -0.655 5.655 19 C 0.102 3.898 20 C -0.128 4.128 21 C -0.156 4.156 22 C 0.072 3.928 23 N -0.473 5.473 24 C 0.120 3.880 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.153 4.153 28 H 0.291 0.709 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.426 0.574 36 H 0.136 0.864 37 H 0.155 0.845 38 H 0.189 0.811 39 H 0.132 0.868 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.268 -13.723 6.288 15.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.168 4.168 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.495 4.495 8 H 0.076 0.924 9 C 0.082 3.918 10 C -0.276 4.276 11 C -0.108 4.108 12 C -0.249 4.249 13 C -0.093 4.093 14 C -0.176 4.176 15 C -0.110 4.110 16 C 0.305 3.695 17 O -0.419 6.419 18 N -0.301 5.301 19 C 0.004 3.996 20 C -0.156 4.156 21 C -0.176 4.176 22 C -0.086 4.086 23 N -0.182 5.182 24 C -0.021 4.021 25 C -0.156 4.156 26 C -0.182 4.182 27 C -0.190 4.190 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.138 0.862 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.120 0.880 35 H 0.266 0.734 36 H 0.154 0.846 37 H 0.172 0.828 38 H 0.206 0.794 39 H 0.150 0.850 40 H 0.114 0.886 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.904 -14.324 5.855 15.959 hybrid contribution -0.263 1.877 -0.655 2.005 sum 3.642 -12.447 5.200 13.972 Atomic orbital electron populations 1.69712 1.09025 1.31083 1.38385 1.26789 0.95330 1.04088 0.90608 0.85500 0.79939 0.76807 0.78676 1.19800 1.21020 1.16763 1.19366 0.92506 0.94542 1.43099 0.92377 1.17711 0.92714 0.91814 0.89548 1.21085 0.96298 1.03778 1.06470 1.20966 0.93094 0.98357 0.98420 1.20871 0.99522 0.98935 1.05526 1.20906 0.93975 0.97506 0.96927 1.19442 0.93492 0.99949 1.04674 1.20374 1.02388 0.91278 0.97003 1.21549 0.76274 0.82629 0.89028 1.90579 1.56223 1.78527 1.16580 1.43506 1.54827 1.20693 1.11038 1.18778 0.97932 0.90150 0.92763 1.22237 0.97490 1.01758 0.94145 1.22330 0.99087 0.93909 1.02254 1.23100 0.97939 0.96864 0.90657 1.67360 1.10968 1.32562 1.07312 1.20377 0.98171 0.86986 0.96541 1.20958 1.03412 1.02449 0.88735 1.22967 1.02154 0.90353 1.02754 1.23041 0.94128 1.02780 0.99096 0.89919 0.89352 0.86195 0.85432 0.85354 0.85179 0.88022 0.73404 0.84611 0.82766 0.79423 0.85006 0.88646 0.86394 0.85954 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.25 13.93 21.83 0.30 -46.95 16 2 C 0.05 2.44 5.47 85.26 0.47 2.90 16 3 Si 0.97 43.49 24.37 68.60 1.67 45.16 16 4 H -0.27 -12.00 6.77 99.48 0.67 -11.32 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.24 -10.99 6.49 99.48 0.65 -10.35 16 7 C -0.47 -25.52 8.63 23.46 0.20 -25.32 16 8 H 0.06 3.41 6.95 -2.91 -0.02 3.39 16 9 C 0.08 4.26 5.18 -21.29 -0.11 4.15 16 10 C -0.26 -12.50 6.92 22.73 0.16 -12.35 16 11 C -0.09 -3.79 10.02 22.22 0.22 -3.57 16 12 C -0.23 -8.80 10.05 22.46 0.23 -8.57 16 13 C -0.08 -2.89 9.66 22.22 0.21 -2.67 16 14 C -0.17 -7.49 4.43 -19.41 -0.09 -7.58 16 15 C -0.07 -2.47 5.19 29.10 0.15 -2.32 16 16 C 0.52 19.25 7.32 87.66 0.64 19.89 16 17 O -0.54 -25.14 12.90 -3.04 -0.04 -25.18 16 18 N -0.65 -19.58 5.19 -303.20 -1.57 -21.15 16 19 C 0.10 3.28 6.52 38.24 0.25 3.53 16 20 C -0.13 -4.57 8.92 22.58 0.20 -4.37 16 21 C -0.16 -4.38 10.10 22.34 0.23 -4.16 16 22 C 0.07 1.78 11.18 84.70 0.95 2.73 16 23 N -0.47 -12.86 9.33 -183.39 -1.71 -14.57 16 24 C 0.12 3.30 6.46 42.71 0.28 3.58 16 25 C -0.14 -2.74 5.43 -11.54 -0.06 -2.81 16 26 C -0.15 -2.43 10.02 30.60 0.31 -2.12 16 27 C -0.15 -2.58 10.23 30.60 0.31 -2.27 16 28 H 0.29 14.57 8.30 -92.70 -0.77 13.80 16 29 H 0.09 4.35 4.24 -2.91 -0.01 4.34 16 30 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 31 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 32 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.13 3.22 8.05 -2.39 -0.02 3.20 16 34 H 0.10 3.65 7.11 -2.38 -0.02 3.64 16 35 H 0.43 9.29 7.15 -92.71 -0.66 8.63 16 36 H 0.14 5.85 5.41 -2.91 -0.02 5.83 16 37 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 38 H 0.19 3.17 8.06 -2.91 -0.02 3.14 16 39 H 0.13 2.14 7.03 -2.39 -0.02 2.12 16 40 H 0.10 1.86 7.57 -2.39 -0.02 1.84 16 41 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -70.34 354.34 3.49 -66.85 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: 0.30 Total: 37.16 kcal Atomic # 6 Polarization: -45.87 SS G_CDS: 4.54 Total: -41.32 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -2.98 Total: -82.67 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.04 Total: -25.18 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.67 Total: 45.16 kcal Total: -70.34 3.49 -66.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889882768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.591 kcal (2) G-P(sol) polarization free energy of solvation -70.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds