Wall clock time and date at job start Tue Mar 31 2020 13:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86799 * 120.00016 * 2 1 4 4 H 1.48497 * 109.47546 * 271.53669 * 3 2 1 5 5 H 1.48505 * 109.47043 * 31.54170 * 3 2 1 6 6 H 1.48506 * 109.47213 * 151.53444 * 3 2 1 7 7 C 1.37884 * 120.00454 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99219 * 359.08643 * 7 2 1 9 9 C 1.50695 * 120.00187 * 179.08216 * 7 2 1 10 10 C 1.53004 * 115.54815 * 87.61582 * 9 7 2 11 11 N 1.46499 * 109.46977 * 65.19198 * 10 9 7 12 12 C 1.34775 * 119.99977 * 175.13365 * 11 10 9 13 13 O 1.21571 * 119.99798 * 5.00068 * 12 11 10 14 14 C 1.47692 * 120.00448 * 185.00600 * 12 11 10 15 15 C 1.39471 * 120.20350 * 336.31969 * 14 12 11 16 16 C 1.37977 * 119.97014 * 180.02562 * 15 14 12 17 17 C 1.38484 * 120.39829 * 0.02562 * 16 15 14 18 18 C 1.38074 * 120.42145 * 359.74008 * 17 16 15 19 19 C 1.39175 * 120.01575 * 0.51072 * 18 17 16 20 20 C 1.48230 * 120.19534 * 179.76411 * 19 18 17 21 21 C 1.39821 * 120.91647 * 303.77927 * 20 19 18 22 22 C 1.38000 * 119.01360 * 180.02562 * 21 20 19 23 23 N 1.31904 * 120.88528 * 0.27593 * 22 21 20 24 24 C 1.31915 * 122.02791 * 359.42766 * 23 22 21 25 25 C 1.37994 * 120.88560 * 0.57594 * 24 23 22 26 26 C 1.52998 * 117.49836 * 233.28231 * 9 7 2 27 27 C 1.52997 * 117.50112 * 301.94661 * 9 7 2 28 28 H 0.97002 * 120.00136 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47133 * 305.19070 * 10 9 7 30 30 H 1.08996 * 109.47013 * 185.19117 * 10 9 7 31 31 H 0.96999 * 120.00277 * 355.13218 * 11 10 9 32 32 H 1.08003 * 120.01348 * 0.02562 * 15 14 12 33 33 H 1.08000 * 119.79834 * 179.97438 * 16 15 14 34 34 H 1.08002 * 119.78835 * 180.02562 * 17 16 15 35 35 H 1.07992 * 119.99278 * 180.25963 * 18 17 16 36 36 H 1.07996 * 120.49400 * 359.97438 * 21 20 19 37 37 H 1.07998 * 119.55293 * 180.02562 * 22 21 20 38 38 H 1.07996 * 119.55555 * 180.26965 * 24 23 22 39 39 H 1.07999 * 120.49371 * 179.70017 * 25 24 23 40 40 H 1.09005 * 117.49970 * 215.00406 * 26 9 7 41 41 H 1.09004 * 117.49854 * 0.03000 * 26 9 7 42 42 H 1.08995 * 117.49725 * 359.97438 * 27 9 7 43 43 H 1.08994 * 117.50037 * 144.97729 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4641 2.0653 -1.3995 5 1 1.4631 2.6430 0.7324 6 1 3.5625 1.4310 0.6673 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 0.0140 9 6 3.5114 -1.1941 -0.0214 10 6 4.1903 -1.1262 1.3480 11 7 3.8885 -2.3445 2.1036 12 6 4.4623 -2.5517 3.3054 13 8 5.1582 -1.6883 3.8036 14 6 4.2457 -3.8276 4.0170 15 6 3.1175 -4.6007 3.7439 16 6 2.9198 -5.7916 4.4119 17 6 3.8357 -6.2264 5.3552 18 6 4.9607 -5.4764 5.6350 19 6 5.1748 -4.2698 4.9752 20 6 6.3786 -3.4589 5.2762 21 6 6.6561 -3.0423 6.5817 22 6 7.7876 -2.2882 6.8174 23 7 8.5976 -1.9562 5.8308 24 6 8.3755 -2.3331 4.5863 25 6 7.2674 -3.0889 4.2621 26 6 4.2027 -2.0137 -1.1128 27 6 4.2017 -0.4847 -1.1881 28 1 -0.4850 0.8400 0.0004 29 1 3.8202 -0.2587 1.8944 30 1 5.2686 -1.0389 1.2150 31 1 3.2756 -3.0021 1.7389 32 1 2.3990 -4.2673 3.0097 33 1 2.0449 -6.3879 4.1985 34 1 3.6714 -7.1604 5.8720 35 1 5.6726 -5.8241 6.3688 36 1 5.9945 -3.3062 7.3935 37 1 8.0106 -1.9622 7.8226 38 1 9.0676 -2.0421 3.8100 39 1 7.0892 -3.3900 3.2404 40 1 5.1413 -2.5045 -0.8553 41 1 3.5676 -2.5525 -1.8160 42 1 3.5660 -0.0184 -1.9407 43 1 5.1394 0.0305 -0.9799 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890357333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:14 Heat of formation + Delta-G solvation = 55.018585 kcal Electronic energy + Delta-G solvation = -26448.423100 eV Core-core repulsion = 22845.316122 eV Total energy + Delta-G solvation = -3603.106978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.60993 -39.36050 -38.25220 -37.01661 -33.98320 -33.20857 -32.19415 -31.42110 -31.01406 -29.84544 -26.91117 -25.42875 -24.09038 -23.74617 -22.93548 -21.79851 -21.41275 -20.04826 -19.33960 -17.89766 -16.97029 -16.46749 -16.19640 -15.79241 -15.60242 -15.22938 -15.14106 -14.76787 -14.58357 -14.30141 -13.82788 -13.67459 -13.52825 -13.32069 -13.09818 -12.83048 -12.73845 -12.43731 -12.10130 -11.88608 -11.64181 -11.36594 -11.21360 -10.86169 -10.57317 -10.25824 -10.13398 -9.71414 -9.45045 -9.36821 -9.25610 -9.13634 -9.02409 -8.73278 -8.68740 -8.60707 -8.34400 -6.21939 -4.27233 0.65446 1.00209 1.26971 1.57260 3.01900 3.24369 3.35410 3.39577 3.56614 3.75979 3.93301 4.33222 4.34829 4.53165 4.70261 4.73350 4.82919 4.93824 4.97628 5.07769 5.12199 5.20935 5.27617 5.32469 5.52912 5.60290 5.66277 5.75020 5.82610 5.95599 6.00506 6.00853 6.10644 6.16969 6.18790 6.26796 6.36612 6.37983 6.45897 6.64776 6.68598 6.76674 6.91939 6.99776 7.03954 7.61426 8.03866 8.06018 8.33907 8.61706 8.77186 9.41250 10.89169 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013158 B = 0.004062 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.536938 B = 6892.318931 C = 8031.540080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.082 3.918 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.257 1.257 7 C -0.493 4.493 8 H 0.078 0.922 9 C -0.017 4.017 10 C 0.157 3.843 11 N -0.694 5.694 12 C 0.542 3.458 13 O -0.537 6.537 14 C -0.108 4.108 15 C -0.084 4.084 16 C -0.119 4.119 17 C -0.101 4.101 18 C -0.112 4.112 19 C -0.009 4.009 20 C 0.014 3.986 21 C -0.159 4.159 22 C 0.094 3.906 23 N -0.488 5.488 24 C 0.098 3.902 25 C -0.122 4.122 26 C -0.178 4.178 27 C -0.192 4.192 28 H 0.266 0.734 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.404 0.596 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.125 0.875 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.388 -12.373 10.100 19.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.122 4.122 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.530 4.530 8 H 0.096 0.904 9 C -0.018 4.018 10 C 0.034 3.966 11 N -0.344 5.344 12 C 0.328 3.672 13 O -0.416 6.416 14 C -0.111 4.111 15 C -0.103 4.103 16 C -0.137 4.137 17 C -0.119 4.119 18 C -0.130 4.130 19 C -0.010 4.010 20 C 0.006 3.994 21 C -0.179 4.179 22 C -0.063 4.063 23 N -0.197 5.197 24 C -0.058 4.058 25 C -0.142 4.142 26 C -0.215 4.215 27 C -0.230 4.230 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.240 0.760 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.170 0.830 38 H 0.169 0.831 39 H 0.143 0.857 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.455 -11.100 10.588 19.145 hybrid contribution -0.976 0.253 -0.530 1.139 sum 10.478 -10.847 10.058 18.128 Atomic orbital electron populations 1.69873 1.06386 1.27349 1.49399 1.24958 0.94573 0.99146 0.93493 0.86866 0.80782 0.83311 0.78451 1.20363 1.22015 1.18128 1.20165 0.85993 0.94493 1.52367 0.90395 1.19618 0.95351 1.00895 0.85930 1.21173 0.97067 0.86070 0.92291 1.45835 1.46172 1.23875 1.18484 1.18187 0.80786 0.86629 0.81636 1.90805 1.39535 1.44765 1.66499 1.20163 0.96525 0.96028 0.98402 1.21467 0.96315 0.93782 0.98740 1.21213 0.99665 0.96296 0.96509 1.21239 0.93766 0.99582 0.97340 1.21127 0.98164 0.93840 0.99895 1.18669 0.93182 0.94109 0.95017 1.18867 0.92344 0.94697 0.93498 1.22063 0.99048 1.00456 0.96319 1.22534 0.90817 0.94746 0.98249 1.67551 1.31159 1.20333 1.00702 1.22515 0.95770 0.94048 0.93474 1.21998 0.94770 0.98221 0.99228 1.22846 1.01040 0.93055 1.04549 1.22949 1.01412 0.94941 1.03670 0.92412 0.91741 0.93502 0.75996 0.84491 0.85129 0.85383 0.85322 0.85110 0.83040 0.83074 0.85657 0.90924 0.89366 0.89121 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.96 55.43 0.77 -25.17 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.18 24.82 -169.99 -4.22 16.96 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -5.98 5.80 56.52 0.33 -5.65 16 7 C -0.49 -12.58 9.19 -34.44 -0.32 -12.89 16 8 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 9 C -0.02 -0.36 0.84 -155.66 -0.13 -0.49 16 10 C 0.16 3.23 5.13 -4.04 -0.02 3.21 16 11 N -0.69 -12.59 5.43 -61.30 -0.33 -12.92 16 12 C 0.54 9.64 6.86 -12.40 -0.09 9.56 16 13 O -0.54 -11.03 13.44 5.30 0.07 -10.96 16 14 C -0.11 -1.58 5.86 -104.69 -0.61 -2.19 16 15 C -0.08 -1.05 9.40 -39.22 -0.37 -1.42 16 16 C -0.12 -1.18 10.02 -39.59 -0.40 -1.57 16 17 C -0.10 -0.91 10.03 -39.55 -0.40 -1.31 16 18 C -0.11 -1.15 9.63 -39.29 -0.38 -1.53 16 19 C -0.01 -0.12 5.48 -104.55 -0.57 -0.69 16 20 C 0.01 0.20 4.13 -104.60 -0.43 -0.23 16 21 C -0.16 -2.00 9.75 -39.08 -0.38 -2.38 16 22 C 0.09 1.19 11.17 -17.61 -0.20 0.99 16 23 N -0.49 -7.14 10.34 -13.34 -0.14 -7.28 16 24 C 0.10 1.37 11.17 -17.61 -0.20 1.18 16 25 C -0.12 -1.76 7.36 -39.08 -0.29 -2.05 16 26 C -0.18 -3.30 9.96 -26.69 -0.27 -3.57 16 27 C -0.19 -3.85 7.53 -26.69 -0.20 -4.05 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.06 1.49 6.82 -51.93 -0.35 1.13 16 30 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 31 H 0.40 6.82 6.82 -40.82 -0.28 6.54 16 32 H 0.14 1.65 6.94 -52.48 -0.36 1.29 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.13 1.75 7.81 -52.49 -0.41 1.34 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.09 1.91 7.17 -51.93 -0.37 1.54 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 359.78 15.07 5.42 5.42 Total: -1.00 -31.67 359.78 -9.40 -41.07 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.64 Total: 10.19 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -5.34 Total: -17.31 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.30 Total: -45.37 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.22 Total: 16.96 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.67 -9.40 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890357333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.088 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds