Wall clock time and date at job start Tue Mar 31 2020 13:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86799 * 120.00016 * 2 1 4 4 H 1.48497 * 109.47546 * 271.53669 * 3 2 1 5 5 H 1.48505 * 109.47043 * 31.54170 * 3 2 1 6 6 H 1.48506 * 109.47213 * 151.53444 * 3 2 1 7 7 C 1.37884 * 120.00454 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99219 * 359.08643 * 7 2 1 9 9 C 1.50695 * 120.00187 * 179.08216 * 7 2 1 10 10 C 1.53004 * 115.54815 * 87.61582 * 9 7 2 11 11 N 1.46499 * 109.46977 * 65.19198 * 10 9 7 12 12 C 1.34775 * 119.99977 * 175.13365 * 11 10 9 13 13 O 1.21571 * 119.99798 * 5.00068 * 12 11 10 14 14 C 1.47692 * 120.00448 * 185.00600 * 12 11 10 15 15 C 1.39471 * 120.20350 * 336.31969 * 14 12 11 16 16 C 1.37977 * 119.97014 * 180.02562 * 15 14 12 17 17 C 1.38484 * 120.39829 * 0.02562 * 16 15 14 18 18 C 1.38074 * 120.42145 * 359.74008 * 17 16 15 19 19 C 1.39175 * 120.01575 * 0.51072 * 18 17 16 20 20 C 1.48230 * 120.19534 * 179.76411 * 19 18 17 21 21 C 1.39821 * 120.91647 * 303.77927 * 20 19 18 22 22 C 1.38000 * 119.01360 * 180.02562 * 21 20 19 23 23 N 1.31904 * 120.88528 * 0.27593 * 22 21 20 24 24 C 1.31915 * 122.02791 * 359.42766 * 23 22 21 25 25 C 1.37994 * 120.88560 * 0.57594 * 24 23 22 26 26 C 1.52998 * 117.49836 * 233.28231 * 9 7 2 27 27 C 1.52997 * 117.50112 * 301.94661 * 9 7 2 28 28 H 0.97002 * 120.00136 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47133 * 305.19070 * 10 9 7 30 30 H 1.08996 * 109.47013 * 185.19117 * 10 9 7 31 31 H 0.96999 * 120.00277 * 355.13218 * 11 10 9 32 32 H 1.08003 * 120.01348 * 0.02562 * 15 14 12 33 33 H 1.08000 * 119.79834 * 179.97438 * 16 15 14 34 34 H 1.08002 * 119.78835 * 180.02562 * 17 16 15 35 35 H 1.07992 * 119.99278 * 180.25963 * 18 17 16 36 36 H 1.07996 * 120.49400 * 359.97438 * 21 20 19 37 37 H 1.07998 * 119.55293 * 180.02562 * 22 21 20 38 38 H 1.07996 * 119.55555 * 180.26965 * 24 23 22 39 39 H 1.07999 * 120.49371 * 179.70017 * 25 24 23 40 40 H 1.09005 * 117.49970 * 215.00406 * 26 9 7 41 41 H 1.09004 * 117.49854 * 0.03000 * 26 9 7 42 42 H 1.08995 * 117.49725 * 359.97438 * 27 9 7 43 43 H 1.08994 * 117.50037 * 144.97729 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4641 2.0653 -1.3995 5 1 1.4631 2.6430 0.7324 6 1 3.5625 1.4310 0.6673 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 0.0140 9 6 3.5114 -1.1941 -0.0214 10 6 4.1903 -1.1262 1.3480 11 7 3.8885 -2.3445 2.1036 12 6 4.4623 -2.5517 3.3054 13 8 5.1582 -1.6883 3.8036 14 6 4.2457 -3.8276 4.0170 15 6 3.1175 -4.6007 3.7439 16 6 2.9198 -5.7916 4.4119 17 6 3.8357 -6.2264 5.3552 18 6 4.9607 -5.4764 5.6350 19 6 5.1748 -4.2698 4.9752 20 6 6.3786 -3.4589 5.2762 21 6 6.6561 -3.0423 6.5817 22 6 7.7876 -2.2882 6.8174 23 7 8.5976 -1.9562 5.8308 24 6 8.3755 -2.3331 4.5863 25 6 7.2674 -3.0889 4.2621 26 6 4.2027 -2.0137 -1.1128 27 6 4.2017 -0.4847 -1.1881 28 1 -0.4850 0.8400 0.0004 29 1 3.8202 -0.2587 1.8944 30 1 5.2686 -1.0389 1.2150 31 1 3.2756 -3.0021 1.7389 32 1 2.3990 -4.2673 3.0097 33 1 2.0449 -6.3879 4.1985 34 1 3.6714 -7.1604 5.8720 35 1 5.6726 -5.8241 6.3688 36 1 5.9945 -3.3062 7.3935 37 1 8.0106 -1.9622 7.8226 38 1 9.0676 -2.0421 3.8100 39 1 7.0892 -3.3900 3.2404 40 1 5.1413 -2.5045 -0.8553 41 1 3.5676 -2.5525 -1.8160 42 1 3.5660 -0.0184 -1.9407 43 1 5.1394 0.0305 -0.9799 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890357333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:13 Heat of formation + Delta-G solvation = 35.875863 kcal Electronic energy + Delta-G solvation = -26449.253190 eV Core-core repulsion = 22845.316122 eV Total energy + Delta-G solvation = -3603.937069 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68379 -40.51051 -39.41190 -38.57187 -35.29433 -34.35746 -34.22355 -32.40294 -31.99942 -30.76510 -28.52773 -27.25072 -25.15126 -24.71862 -23.96677 -23.36197 -22.38197 -21.38767 -20.97806 -19.13512 -18.30978 -17.91374 -17.27157 -17.03643 -16.87803 -16.69648 -16.24298 -16.00854 -15.75905 -15.57410 -15.20633 -14.81533 -14.70290 -14.53174 -14.43987 -14.22239 -14.13353 -13.87379 -13.52296 -13.12597 -12.75390 -12.70924 -12.59058 -12.24084 -12.18860 -12.00476 -11.62575 -11.31999 -11.00609 -10.70470 -10.62665 -10.45747 -10.32697 -10.15589 -9.98532 -9.79901 -9.61343 -8.32749 -6.38774 -0.31035 0.10907 0.27484 0.61867 1.30362 1.37247 1.46643 1.84956 2.20723 2.33482 2.75486 2.93215 3.03052 3.20765 3.40914 3.60874 3.74337 3.85702 3.99221 4.01521 4.11075 4.19362 4.26436 4.33285 4.37353 4.42174 4.44827 4.48418 4.63323 4.69897 4.78786 4.83923 4.87443 4.91327 5.06387 5.10259 5.18864 5.26260 5.34105 5.43807 5.45353 5.46370 5.51769 5.67162 5.79589 5.88585 6.25548 6.62148 6.70787 7.05420 7.22878 7.32220 8.81631 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013158 B = 0.004062 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.536938 B = 6892.318931 C = 8031.540080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.030 3.970 3 Si 0.925 3.075 4 H -0.266 1.266 5 H -0.304 1.304 6 H -0.245 1.245 7 C -0.478 4.478 8 H 0.049 0.951 9 C -0.040 4.040 10 C 0.169 3.831 11 N -0.696 5.696 12 C 0.542 3.458 13 O -0.570 6.570 14 C -0.135 4.135 15 C -0.094 4.094 16 C -0.115 4.115 17 C -0.084 4.084 18 C -0.108 4.108 19 C -0.021 4.021 20 C 0.002 3.998 21 C -0.162 4.162 22 C 0.088 3.912 23 N -0.511 5.511 24 C 0.085 3.915 25 C -0.138 4.138 26 C -0.150 4.150 27 C -0.192 4.192 28 H 0.264 0.736 29 H 0.033 0.967 30 H 0.058 0.942 31 H 0.409 0.591 32 H 0.131 0.869 33 H 0.158 0.842 34 H 0.168 0.832 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.182 0.818 38 H 0.165 0.835 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.712 -14.403 11.340 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.168 4.168 3 Si 0.752 3.248 4 H -0.191 1.191 5 H -0.231 1.231 6 H -0.168 1.168 7 C -0.516 4.516 8 H 0.067 0.933 9 C -0.041 4.041 10 C 0.044 3.956 11 N -0.346 5.346 12 C 0.330 3.670 13 O -0.451 6.451 14 C -0.138 4.138 15 C -0.113 4.113 16 C -0.133 4.133 17 C -0.102 4.102 18 C -0.125 4.125 19 C -0.022 4.022 20 C -0.006 4.006 21 C -0.181 4.181 22 C -0.069 4.069 23 N -0.221 5.221 24 C -0.071 4.071 25 C -0.158 4.158 26 C -0.187 4.187 27 C -0.230 4.230 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.245 0.755 32 H 0.148 0.852 33 H 0.176 0.824 34 H 0.186 0.814 35 H 0.172 0.828 36 H 0.174 0.826 37 H 0.199 0.801 38 H 0.182 0.818 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.798 -13.157 11.812 21.827 hybrid contribution -1.423 0.725 -0.854 1.811 sum 11.374 -12.431 10.959 20.100 Atomic orbital electron populations 1.69994 1.07944 1.27860 1.52288 1.25641 0.95044 1.02208 0.93929 0.86095 0.80060 0.79792 0.78903 1.19115 1.23121 1.16813 1.20341 0.88355 0.92968 1.49919 0.93317 1.19456 0.93104 1.04335 0.87233 1.20860 0.97259 0.86015 0.91417 1.45795 1.46639 1.23263 1.18858 1.18716 0.79628 0.87517 0.81131 1.90772 1.40935 1.46221 1.67180 1.19960 0.98541 0.95342 0.99976 1.21525 0.95643 0.94812 0.99308 1.21565 1.00705 0.95208 0.95812 1.21714 0.92198 1.00282 0.95990 1.21455 0.99017 0.92514 0.99560 1.18807 0.92733 0.95338 0.95369 1.19141 0.92552 0.94889 0.94028 1.22370 0.99304 0.99947 0.96513 1.23087 0.90506 0.94161 0.99150 1.67590 1.32160 1.21162 1.01183 1.22785 0.96175 0.94138 0.93958 1.22048 0.95435 0.99061 0.99278 1.22869 1.01467 0.92411 1.01970 1.23011 1.01775 0.96206 1.02009 0.92651 0.94896 0.92425 0.75477 0.85158 0.82396 0.81405 0.82824 0.82640 0.80114 0.81751 0.86270 0.88070 0.89412 0.90250 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.53 13.96 21.45 0.30 -56.23 16 2 C 0.03 1.68 5.47 84.66 0.46 2.14 16 3 Si 0.93 44.14 24.82 68.60 1.70 45.84 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 6 H -0.24 -11.08 5.80 99.48 0.58 -10.50 16 7 C -0.48 -24.89 9.19 25.60 0.24 -24.66 16 8 H 0.05 2.76 8.06 -2.91 -0.02 2.74 16 9 C -0.04 -1.69 0.84 -52.93 -0.04 -1.74 16 10 C 0.17 6.92 5.13 86.38 0.44 7.36 16 11 N -0.70 -25.61 5.43 -466.13 -2.53 -28.14 16 12 C 0.54 19.61 6.86 86.74 0.60 20.20 16 13 O -0.57 -23.93 13.44 -3.94 -0.05 -23.98 16 14 C -0.14 -3.90 5.86 -19.91 -0.12 -4.01 16 15 C -0.09 -2.24 9.40 22.51 0.21 -2.03 16 16 C -0.12 -1.92 10.02 22.27 0.22 -1.69 16 17 C -0.08 -1.14 10.03 22.29 0.22 -0.92 16 18 C -0.11 -1.85 9.63 22.46 0.22 -1.63 16 19 C -0.02 -0.54 5.48 -19.82 -0.11 -0.65 16 20 C 0.00 0.06 4.13 -19.85 -0.08 -0.02 16 21 C -0.16 -3.83 9.75 22.60 0.22 -3.61 16 22 C 0.09 2.11 11.17 84.63 0.95 3.06 16 23 N -0.51 -14.70 10.34 -196.12 -2.03 -16.72 16 24 C 0.08 2.39 11.17 84.62 0.95 3.34 16 25 C -0.14 -4.01 7.36 22.60 0.17 -3.85 16 26 C -0.15 -5.27 9.96 30.62 0.30 -4.97 16 27 C -0.19 -7.35 7.53 30.62 0.23 -7.12 16 28 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 29 H 0.03 1.54 6.82 -2.39 -0.02 1.53 16 30 H 0.06 2.23 8.09 -2.39 -0.02 2.21 16 31 H 0.41 14.08 6.82 -92.71 -0.63 13.45 16 32 H 0.13 3.16 6.94 -2.91 -0.02 3.14 16 33 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 37 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 38 H 0.17 3.89 8.06 -2.91 -0.02 3.86 16 39 H 0.12 3.45 7.81 -2.91 -0.02 3.43 16 40 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 41 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 42 H 0.08 3.23 7.17 -2.39 -0.02 3.21 16 43 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -71.20 359.78 2.73 -68.47 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.27 Total: 31.55 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 5.07 Total: -20.78 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -4.26 Total: -101.09 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.70 Total: 45.84 kcal Total: -71.20 2.73 -68.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890357333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.347 kcal (2) G-P(sol) polarization free energy of solvation -71.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds