Wall clock time and date at job start Tue Mar 31 2020 13:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86801 * 120.00084 * 2 1 4 4 H 1.48499 * 109.46976 * 240.00124 * 3 2 1 5 5 H 1.48494 * 109.46993 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46641 * 120.00027 * 3 2 1 7 7 C 1.40221 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00024 * 197.86766 * 7 2 1 9 9 C 1.41117 * 120.00131 * 17.86371 * 7 2 1 10 10 C 1.40884 * 120.10392 * 204.63299 * 9 7 2 11 11 C 1.36318 * 119.89270 * 180.02562 * 10 9 7 12 12 C 1.40012 * 120.10318 * 0.02562 * 11 10 9 13 13 C 1.47644 * 119.89427 * 179.97438 * 12 11 10 14 14 O 1.21588 * 119.99782 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99872 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99820 * 179.97438 * 15 13 12 17 17 H 1.09005 * 109.46846 * 324.72810 * 16 15 13 18 18 C 1.50694 * 109.47144 * 204.72310 * 16 15 13 19 19 C 1.38648 * 120.79186 * 319.71857 * 18 16 15 20 20 C 1.38205 * 119.16238 * 179.79865 * 19 18 16 21 21 N 1.31869 * 120.76682 * 0.48741 * 20 19 18 22 22 C 1.31875 * 121.72057 * 359.74493 * 21 20 19 23 23 C 1.38205 * 120.76687 * 0.02562 * 22 21 20 24 24 C 1.53001 * 109.47271 * 84.71959 * 16 15 13 25 25 C 1.53002 * 117.49559 * 8.62548 * 24 16 15 26 26 C 1.52995 * 59.99909 * 252.50703 * 25 24 16 27 27 C 1.40015 * 120.21082 * 0.23431 * 12 11 10 28 28 C 1.36312 * 120.10642 * 359.47922 * 27 12 11 29 29 H 0.97009 * 119.99920 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.05751 * 0.02562 * 10 9 7 31 31 H 1.07998 * 119.95014 * 180.02562 * 11 10 9 32 32 H 0.96995 * 120.00674 * 359.72029 * 15 13 12 33 33 H 1.08004 * 120.41484 * 0.02562 * 19 18 16 34 34 H 1.08002 * 119.61198 * 180.20737 * 20 19 18 35 35 H 1.08001 * 119.61260 * 180.02562 * 22 21 20 36 36 H 1.08000 * 120.41521 * 179.97438 * 23 22 21 37 37 H 1.08996 * 115.54951 * 154.32600 * 24 16 15 38 38 H 1.09001 * 117.49869 * 359.97438 * 25 24 16 39 39 H 1.09004 * 117.49817 * 145.01988 * 25 24 16 40 40 H 1.08997 * 117.49920 * 252.51013 * 26 25 24 41 41 H 1.08998 * 117.51814 * 107.48122 * 26 25 24 42 42 H 1.08001 * 119.94521 * 179.72784 * 27 12 11 43 43 H 1.08002 * 120.05888 * 180.25824 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2756 2.7464 0.0006 6 1 3.0942 1.6963 1.2125 7 6 2.0075 -1.2144 -0.0005 8 1 3.0484 -1.2371 0.2864 9 6 1.3530 -2.4069 -0.3760 10 6 1.8265 -3.6495 0.0892 11 6 1.1912 -4.7988 -0.2765 12 6 0.0701 -4.7456 -1.1136 13 6 -0.6141 -5.9933 -1.5073 14 8 -0.2035 -7.0647 -1.1051 15 7 -1.6932 -5.9445 -2.3133 16 6 -2.3718 -7.1826 -2.7044 17 1 -1.6358 -7.9774 -2.8265 18 6 -3.0991 -6.9671 -4.0066 19 6 -3.7779 -5.7835 -4.2529 20 6 -4.4300 -5.6199 -5.4604 21 7 -4.4194 -6.5766 -6.3678 22 6 -3.7883 -7.7168 -6.1659 23 6 -3.1103 -7.9500 -4.9843 24 6 -3.3751 -7.5790 -1.6194 25 6 -3.6345 -6.5735 -0.4958 26 6 -2.8290 -7.8436 -0.2149 27 6 -0.4010 -3.5134 -1.5828 28 6 0.2242 -2.3584 -1.2177 29 1 -0.4850 0.8401 0.0004 30 1 2.6915 -3.6916 0.7345 31 1 1.5532 -5.7518 0.0798 32 1 -2.0228 -5.0896 -2.6315 33 1 -3.7937 -4.9978 -3.5120 34 1 -4.9582 -4.6995 -5.6613 35 1 -3.8014 -8.4771 -6.9328 36 1 -2.5957 -8.8860 -4.8248 37 1 -4.2154 -8.1865 -1.9555 38 1 -3.0901 -5.6298 -0.5293 39 1 -4.6457 -6.5193 -0.0924 40 1 -3.3103 -8.6250 0.3732 41 1 -1.7550 -7.7357 -0.0640 42 1 -1.2635 -3.4777 -2.2318 43 1 -0.1424 -1.4081 -1.5767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890913468.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:36 Heat of formation + Delta-G solvation = 42.193464 kcal Electronic energy + Delta-G solvation = -26057.934369 eV Core-core repulsion = 22454.271252 eV Total energy + Delta-G solvation = -3603.663117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.66746 -39.41265 -37.64083 -36.52337 -34.24723 -33.91761 -32.34853 -31.32322 -30.18673 -29.50373 -27.46306 -25.67816 -23.70515 -22.67341 -22.17768 -22.05869 -21.04243 -20.18575 -19.48416 -17.69298 -17.54019 -16.62573 -16.17876 -15.94184 -15.71515 -15.50038 -15.11337 -14.48563 -14.06849 -13.90502 -13.78363 -13.73069 -13.30547 -12.93119 -12.79324 -12.69031 -12.16169 -12.05254 -11.84479 -11.72675 -11.40956 -11.31807 -11.27299 -11.00280 -10.69315 -10.37492 -10.11744 -9.97886 -9.72411 -9.61972 -9.57166 -9.39670 -9.30607 -9.03781 -8.65518 -7.78517 -7.60708 -7.09110 -4.65998 0.98489 1.06344 2.15773 2.88646 2.91168 2.95012 2.98143 3.52266 3.67546 3.69687 3.78241 4.03358 4.30778 4.36382 4.49244 4.67659 4.91115 4.99450 5.03554 5.13498 5.23997 5.37871 5.47582 5.51852 5.54076 5.66618 5.83422 5.87926 5.94517 5.97623 6.04516 6.20861 6.25593 6.33176 6.53456 6.58805 6.71440 6.77213 6.83842 6.98695 7.07338 7.37307 7.58254 7.72132 7.80077 7.81255 8.01203 8.12013 8.33938 8.57380 8.69297 8.96673 9.82689 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.003136 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.558798 B = 8925.725000 C = 9916.370173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.441 4.441 8 H 0.085 0.915 9 C 0.130 3.870 10 C -0.239 4.239 11 C -0.020 4.020 12 C -0.287 4.287 13 C 0.576 3.424 14 O -0.568 6.568 15 N -0.735 5.735 16 C 0.217 3.783 17 H 0.100 0.900 18 C -0.036 4.036 19 C -0.162 4.162 20 C 0.101 3.899 21 N -0.489 5.489 22 C 0.098 3.902 23 C -0.163 4.163 24 C -0.169 4.169 25 C -0.173 4.173 26 C -0.179 4.179 27 C -0.063 4.063 28 C -0.177 4.177 29 H 0.288 0.712 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.397 0.603 33 H 0.135 0.865 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.136 0.864 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.125 0.875 42 H 0.086 0.914 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.236 -7.443 -6.559 12.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.126 3.874 10 C -0.259 4.259 11 C -0.039 4.039 12 C -0.291 4.291 13 C 0.372 3.628 14 O -0.450 6.450 15 N -0.388 5.388 16 C 0.111 3.889 17 H 0.118 0.882 18 C -0.045 4.045 19 C -0.182 4.182 20 C -0.056 4.056 21 N -0.198 5.198 22 C -0.059 4.059 23 C -0.184 4.184 24 C -0.189 4.189 25 C -0.210 4.210 26 C -0.216 4.216 27 C -0.082 4.082 28 C -0.197 4.197 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.234 0.766 33 H 0.153 0.847 34 H 0.174 0.826 35 H 0.173 0.827 36 H 0.154 0.846 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.143 0.857 42 H 0.104 0.896 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.598 -7.900 -7.051 13.640 hybrid contribution 0.400 1.081 0.709 1.353 sum -8.198 -6.819 -6.342 12.407 Atomic orbital electron populations 1.69734 1.07918 1.30234 1.31401 1.26105 0.94828 1.01917 0.91859 0.86252 0.80228 0.79385 0.80393 1.18435 1.20004 1.18630 1.19845 0.98444 0.91228 1.37351 0.89696 1.17781 0.90332 0.92161 0.87095 1.20718 1.04639 0.92652 1.07879 1.20348 0.92822 0.97138 0.93582 1.18839 1.04706 0.90870 1.14727 1.18571 0.78196 0.89743 0.76301 1.90570 1.66340 1.31483 1.56624 1.46042 1.31598 1.08240 1.52937 1.19157 0.92484 0.89015 0.88195 0.88218 1.20388 0.95061 0.93903 0.95108 1.22003 0.98787 0.98318 0.99095 1.22760 0.95968 0.97565 0.89286 1.67678 1.17941 1.01491 1.32708 1.22736 0.92846 0.94497 0.95786 1.22032 1.01454 1.00356 0.94507 1.22616 1.01141 1.04838 0.90285 1.22953 1.00939 0.95338 1.01798 1.23383 1.02976 0.98774 0.96463 1.20445 0.97368 0.92658 0.97715 1.20969 0.99907 0.96900 1.01881 0.90114 0.88382 0.88091 0.76593 0.84708 0.82627 0.82732 0.84569 0.87872 0.88109 0.89492 0.89681 0.85746 0.89564 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.96 10.95 55.56 0.61 -17.36 16 2 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 3 Si 0.91 16.90 29.60 -169.99 -5.03 11.87 16 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 5 H -0.28 -4.95 7.11 56.52 0.40 -4.55 16 6 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 7 C -0.44 -10.73 9.04 -37.75 -0.34 -11.07 16 8 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 9 C 0.13 3.21 5.58 -106.80 -0.60 2.62 16 10 C -0.24 -5.63 9.73 -39.27 -0.38 -6.02 16 11 C -0.02 -0.45 9.52 -39.61 -0.38 -0.82 16 12 C -0.29 -6.23 5.89 -104.73 -0.62 -6.84 16 13 C 0.58 11.28 6.58 -12.42 -0.08 11.20 16 14 O -0.57 -12.22 13.32 5.29 0.07 -12.15 16 15 N -0.73 -11.42 3.53 -55.94 -0.20 -11.62 16 16 C 0.22 2.93 2.67 -69.08 -0.18 2.74 16 17 H 0.10 1.47 7.49 -51.93 -0.39 1.09 16 18 C -0.04 -0.42 4.96 -104.32 -0.52 -0.94 16 19 C -0.16 -1.79 9.15 -39.44 -0.36 -2.15 16 20 C 0.10 1.09 11.18 -17.55 -0.20 0.89 16 21 N -0.49 -5.81 10.36 -13.25 -0.14 -5.95 16 22 C 0.10 1.01 11.18 -17.55 -0.20 0.81 16 23 C -0.16 -1.70 9.78 -39.44 -0.39 -2.08 16 24 C -0.17 -2.18 5.69 -90.62 -0.52 -2.70 16 25 C -0.17 -2.38 9.73 -26.73 -0.26 -2.64 16 26 C -0.18 -2.61 9.82 -26.74 -0.26 -2.87 16 27 C -0.06 -1.33 9.47 -39.61 -0.38 -1.71 16 28 C -0.18 -4.21 8.64 -39.27 -0.34 -4.55 16 29 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 30 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 31 H 0.10 2.21 7.63 -52.49 -0.40 1.81 16 32 H 0.40 5.70 4.97 -40.82 -0.20 5.50 16 33 H 0.14 1.36 7.03 -52.48 -0.37 0.99 16 34 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.10 1.19 8.11 -51.93 -0.42 0.77 16 38 H 0.10 1.57 6.65 -51.93 -0.35 1.22 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.12 2.22 4.98 -51.93 -0.26 1.96 16 42 H 0.09 1.55 6.37 -52.49 -0.33 1.22 16 43 H 0.12 2.89 6.15 -52.49 -0.32 2.56 16 LS Contribution 356.95 15.07 5.38 5.38 Total: -1.00 -27.42 356.95 -10.52 -37.94 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -5.13 Total: 16.39 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -6.08 Total: -24.51 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.27 Total: -34.92 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.07 Total: -12.15 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.42 -10.52 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890913468.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.130 kcal (2) G-P(sol) polarization free energy of solvation -27.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds