Wall clock time and date at job start Tue Mar 31 2020 13:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86801 * 120.00084 * 2 1 4 4 H 1.48499 * 109.46976 * 240.00124 * 3 2 1 5 5 H 1.48494 * 109.46993 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46641 * 120.00027 * 3 2 1 7 7 C 1.40221 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00024 * 197.86766 * 7 2 1 9 9 C 1.41117 * 120.00131 * 17.86371 * 7 2 1 10 10 C 1.40884 * 120.10392 * 204.63299 * 9 7 2 11 11 C 1.36318 * 119.89270 * 180.02562 * 10 9 7 12 12 C 1.40012 * 120.10318 * 0.02562 * 11 10 9 13 13 C 1.47644 * 119.89427 * 179.97438 * 12 11 10 14 14 O 1.21588 * 119.99782 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99872 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99820 * 179.97438 * 15 13 12 17 17 H 1.09005 * 109.46846 * 324.72810 * 16 15 13 18 18 C 1.50694 * 109.47144 * 204.72310 * 16 15 13 19 19 C 1.38648 * 120.79186 * 319.71857 * 18 16 15 20 20 C 1.38205 * 119.16238 * 179.79865 * 19 18 16 21 21 N 1.31869 * 120.76682 * 0.48741 * 20 19 18 22 22 C 1.31875 * 121.72057 * 359.74493 * 21 20 19 23 23 C 1.38205 * 120.76687 * 0.02562 * 22 21 20 24 24 C 1.53001 * 109.47271 * 84.71959 * 16 15 13 25 25 C 1.53002 * 117.49559 * 8.62548 * 24 16 15 26 26 C 1.52995 * 59.99909 * 252.50703 * 25 24 16 27 27 C 1.40015 * 120.21082 * 0.23431 * 12 11 10 28 28 C 1.36312 * 120.10642 * 359.47922 * 27 12 11 29 29 H 0.97009 * 119.99920 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.05751 * 0.02562 * 10 9 7 31 31 H 1.07998 * 119.95014 * 180.02562 * 11 10 9 32 32 H 0.96995 * 120.00674 * 359.72029 * 15 13 12 33 33 H 1.08004 * 120.41484 * 0.02562 * 19 18 16 34 34 H 1.08002 * 119.61198 * 180.20737 * 20 19 18 35 35 H 1.08001 * 119.61260 * 180.02562 * 22 21 20 36 36 H 1.08000 * 120.41521 * 179.97438 * 23 22 21 37 37 H 1.08996 * 115.54951 * 154.32600 * 24 16 15 38 38 H 1.09001 * 117.49869 * 359.97438 * 25 24 16 39 39 H 1.09004 * 117.49817 * 145.01988 * 25 24 16 40 40 H 1.08997 * 117.49920 * 252.51013 * 26 25 24 41 41 H 1.08998 * 117.51814 * 107.48122 * 26 25 24 42 42 H 1.08001 * 119.94521 * 179.72784 * 27 12 11 43 43 H 1.08002 * 120.05888 * 180.25824 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2756 2.7464 0.0006 6 1 3.0942 1.6963 1.2125 7 6 2.0075 -1.2144 -0.0005 8 1 3.0484 -1.2371 0.2864 9 6 1.3530 -2.4069 -0.3760 10 6 1.8265 -3.6495 0.0892 11 6 1.1912 -4.7988 -0.2765 12 6 0.0701 -4.7456 -1.1136 13 6 -0.6141 -5.9933 -1.5073 14 8 -0.2035 -7.0647 -1.1051 15 7 -1.6932 -5.9445 -2.3133 16 6 -2.3718 -7.1826 -2.7044 17 1 -1.6358 -7.9774 -2.8265 18 6 -3.0991 -6.9671 -4.0066 19 6 -3.7779 -5.7835 -4.2529 20 6 -4.4300 -5.6199 -5.4604 21 7 -4.4194 -6.5766 -6.3678 22 6 -3.7883 -7.7168 -6.1659 23 6 -3.1103 -7.9500 -4.9843 24 6 -3.3751 -7.5790 -1.6194 25 6 -3.6345 -6.5735 -0.4958 26 6 -2.8290 -7.8436 -0.2149 27 6 -0.4010 -3.5134 -1.5828 28 6 0.2242 -2.3584 -1.2177 29 1 -0.4850 0.8401 0.0004 30 1 2.6915 -3.6916 0.7345 31 1 1.5532 -5.7518 0.0798 32 1 -2.0228 -5.0896 -2.6315 33 1 -3.7937 -4.9978 -3.5120 34 1 -4.9582 -4.6995 -5.6613 35 1 -3.8014 -8.4771 -6.9328 36 1 -2.5957 -8.8860 -4.8248 37 1 -4.2154 -8.1865 -1.9555 38 1 -3.0901 -5.6298 -0.5293 39 1 -4.6457 -6.5193 -0.0924 40 1 -3.3103 -8.6250 0.3732 41 1 -1.7550 -7.7357 -0.0640 42 1 -1.2635 -3.4777 -2.2318 43 1 -0.1424 -1.4081 -1.5767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890913468.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:35 Heat of formation + Delta-G solvation = 29.774715 kcal Electronic energy + Delta-G solvation = -26058.472886 eV Core-core repulsion = 22454.271252 eV Total energy + Delta-G solvation = -3604.201634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.73126 -40.65631 -39.22078 -37.95040 -35.68352 -35.38238 -33.53163 -32.14627 -31.83884 -31.29631 -28.72160 -27.27980 -24.58638 -23.79651 -23.54458 -23.17863 -22.80677 -21.57653 -20.81445 -19.37059 -18.89840 -17.77628 -17.45050 -17.09995 -17.00447 -16.59320 -16.24015 -15.76303 -15.73289 -15.19283 -15.04954 -14.84090 -14.54365 -14.44148 -14.21488 -13.91699 -13.70685 -13.66045 -13.21490 -12.98668 -12.85825 -12.67048 -12.56537 -12.38579 -12.31746 -11.79263 -11.44539 -11.37701 -11.11350 -11.05814 -10.74960 -10.53809 -10.46545 -10.09459 -9.99313 -9.58045 -9.41507 -8.79890 -6.48750 0.19381 0.19797 0.44179 1.14885 1.38633 1.43977 1.51636 2.11181 2.17341 2.25618 2.77149 2.82224 2.93941 3.35516 3.60705 3.68327 3.85069 3.89793 4.07108 4.13471 4.14340 4.20965 4.23962 4.28841 4.43520 4.44469 4.63122 4.69142 4.80431 4.89141 4.91805 4.95377 5.00322 5.02659 5.15654 5.19518 5.28014 5.29975 5.38644 5.56366 5.60168 5.74964 5.81824 5.93776 5.98877 6.22658 6.53443 6.64803 6.76888 6.88466 7.01678 7.42674 8.14984 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.003136 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.558798 B = 8925.725000 C = 9916.370173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.039 3.961 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.475 4.475 8 H 0.084 0.916 9 C 0.103 3.897 10 C -0.255 4.255 11 C -0.030 4.030 12 C -0.293 4.293 13 C 0.579 3.421 14 O -0.588 6.588 15 N -0.719 5.719 16 C 0.219 3.781 17 H 0.088 0.912 18 C -0.047 4.047 19 C -0.167 4.167 20 C 0.095 3.905 21 N -0.509 5.509 22 C 0.096 3.904 23 C -0.163 4.163 24 C -0.152 4.152 25 C -0.172 4.172 26 C -0.194 4.194 27 C -0.054 4.054 28 C -0.197 4.197 29 H 0.297 0.703 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.405 0.595 33 H 0.142 0.858 34 H 0.177 0.823 35 H 0.182 0.818 36 H 0.154 0.846 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.120 0.880 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.766 -7.433 -7.840 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.502 4.502 8 H 0.102 0.898 9 C 0.100 3.900 10 C -0.274 4.274 11 C -0.050 4.050 12 C -0.297 4.297 13 C 0.373 3.627 14 O -0.472 6.472 15 N -0.371 5.371 16 C 0.114 3.886 17 H 0.106 0.894 18 C -0.056 4.056 19 C -0.187 4.187 20 C -0.061 4.061 21 N -0.219 5.219 22 C -0.061 4.061 23 C -0.183 4.183 24 C -0.171 4.171 25 C -0.209 4.209 26 C -0.231 4.231 27 C -0.073 4.073 28 C -0.216 4.216 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.243 0.757 33 H 0.160 0.840 34 H 0.194 0.806 35 H 0.199 0.801 36 H 0.172 0.828 37 H 0.144 0.856 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.138 0.862 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.159 -7.902 -8.348 15.340 hybrid contribution 0.810 0.945 1.075 1.644 sum -9.349 -6.957 -7.273 13.737 Atomic orbital electron populations 1.69754 1.09153 1.31672 1.31374 1.26892 0.95550 1.04717 0.90839 0.85182 0.78899 0.75110 0.80251 1.18293 1.18736 1.18357 1.20100 0.98776 0.92317 1.39029 0.89753 1.18115 0.91231 0.92818 0.87872 1.20855 1.05220 0.92837 1.08484 1.20495 0.93429 0.96988 0.94051 1.19158 1.04389 0.92179 1.13985 1.18254 0.79043 0.88538 0.76820 1.90572 1.67220 1.31878 1.57508 1.45858 1.30254 1.09643 1.51357 1.19208 0.92379 0.87413 0.89586 0.89405 1.20262 0.95804 0.94953 0.94539 1.22103 0.98773 0.98271 0.99510 1.23106 0.95849 0.98186 0.88941 1.67730 1.18604 1.02241 1.33287 1.23194 0.91987 0.94603 0.96297 1.22247 1.01191 1.00735 0.94088 1.22647 1.01053 1.04180 0.89270 1.22941 1.01509 0.94115 1.02379 1.23294 1.01245 1.00085 0.98468 1.20692 0.97731 0.91642 0.97243 1.20998 1.00498 0.97419 1.02710 0.89163 0.87952 0.87839 0.75744 0.84030 0.80644 0.80107 0.82802 0.85562 0.90164 0.87425 0.87864 0.89135 0.86243 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.40 10.95 21.87 0.24 -37.16 16 2 C 0.04 1.80 5.14 85.35 0.44 2.24 16 3 Si 0.99 34.36 29.60 68.60 2.03 36.39 16 4 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 5 H -0.26 -8.58 7.11 99.48 0.71 -7.88 16 6 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 7 C -0.48 -23.73 9.04 23.46 0.21 -23.52 16 8 H 0.08 4.05 7.91 -2.91 -0.02 4.02 16 9 C 0.10 5.26 5.58 -21.28 -0.12 5.14 16 10 C -0.25 -12.43 9.73 22.47 0.22 -12.21 16 11 C -0.03 -1.42 9.52 22.25 0.21 -1.21 16 12 C -0.29 -12.81 5.89 -19.93 -0.12 -12.93 16 13 C 0.58 22.64 6.58 86.73 0.57 23.21 16 14 O -0.59 -25.55 13.32 -3.99 -0.05 -25.61 16 15 N -0.72 -21.59 3.53 -449.15 -1.59 -23.17 16 16 C 0.22 5.56 2.67 44.24 0.12 5.68 16 17 H 0.09 2.50 7.49 -2.38 -0.02 2.48 16 18 C -0.05 -1.00 4.96 -19.67 -0.10 -1.09 16 19 C -0.17 -3.30 9.15 22.36 0.20 -3.10 16 20 C 0.10 1.84 11.18 84.68 0.95 2.79 16 21 N -0.51 -10.86 10.36 -195.84 -2.03 -12.89 16 22 C 0.10 1.70 11.18 84.68 0.95 2.65 16 23 C -0.16 -2.95 9.78 22.36 0.22 -2.74 16 24 C -0.15 -3.62 5.69 -10.79 -0.06 -3.68 16 25 C -0.17 -4.47 9.73 30.59 0.30 -4.17 16 26 C -0.19 -5.47 9.82 30.59 0.30 -5.17 16 27 C -0.05 -2.30 9.47 22.25 0.21 -2.09 16 28 C -0.20 -9.52 8.64 22.47 0.19 -9.33 16 29 H 0.30 12.42 8.29 -92.70 -0.77 11.65 16 30 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 31 H 0.10 4.68 7.63 -2.91 -0.02 4.66 16 32 H 0.40 10.98 4.97 -92.71 -0.46 10.52 16 33 H 0.14 2.53 7.03 -2.91 -0.02 2.51 16 34 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.13 2.49 8.11 -2.39 -0.02 2.47 16 38 H 0.08 2.43 6.65 -2.39 -0.02 2.41 16 39 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.09 3.27 4.98 -2.39 -0.01 3.25 16 42 H 0.12 4.13 6.37 -2.91 -0.02 4.11 16 43 H 0.11 5.54 6.15 -2.91 -0.02 5.52 16 Total: -1.00 -60.27 356.95 3.89 -56.39 By element: Atomic # 1 Polarization: 44.99 SS G_CDS: 0.59 Total: 45.58 kcal Atomic # 6 Polarization: -44.22 SS G_CDS: 4.69 Total: -39.52 kcal Atomic # 7 Polarization: -69.85 SS G_CDS: -3.38 Total: -73.23 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.61 kcal Atomic # 14 Polarization: 34.36 SS G_CDS: 2.03 Total: 36.39 kcal Total: -60.27 3.89 -56.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890913468.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.162 kcal (2) G-P(sol) polarization free energy of solvation -60.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds