Wall clock time and date at job start Tue Mar 31 2020 13:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86790 * 120.00247 * 2 1 4 4 H 1.48497 * 109.47262 * 239.99987 * 3 2 1 5 5 H 1.48497 * 109.47296 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47263 * 119.99950 * 3 2 1 7 7 C 1.40232 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99546 * 197.86616 * 7 2 1 9 9 C 1.41102 * 120.00110 * 17.86883 * 7 2 1 10 10 C 1.40889 * 120.10656 * 204.63647 * 9 7 2 11 11 C 1.36319 * 119.89483 * 180.02562 * 10 9 7 12 12 C 1.40007 * 120.10588 * 0.02562 * 11 10 9 13 13 C 1.47645 * 119.89121 * 179.97438 * 12 11 10 14 14 O 1.21582 * 120.00002 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99748 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00068 * 180.02562 * 15 13 12 17 17 H 1.09004 * 109.46878 * 35.00250 * 16 15 13 18 18 C 1.50698 * 109.47351 * 155.00107 * 16 15 13 19 19 C 1.38651 * 120.79502 * 220.00410 * 18 16 15 20 20 C 1.38200 * 119.16421 * 179.97438 * 19 18 16 21 21 N 1.31870 * 120.76281 * 0.02562 * 20 19 18 22 22 C 1.31868 * 121.73168 * 359.95630 * 21 20 19 23 23 C 1.38209 * 120.76100 * 0.04159 * 22 21 20 24 24 C 1.53001 * 109.47604 * 275.00411 * 16 15 13 25 25 C 1.52997 * 117.49999 * 128.61603 * 24 16 15 26 26 C 1.52994 * 60.00110 * 252.51359 * 25 24 16 27 27 C 1.40006 * 120.21070 * 0.23858 * 12 11 10 28 28 C 1.36325 * 120.10959 * 359.47709 * 27 12 11 29 29 H 0.97008 * 119.99939 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.04659 * 359.97438 * 10 9 7 31 31 H 1.08001 * 119.94367 * 179.97438 * 11 10 9 32 32 H 0.97002 * 119.99924 * 0.02562 * 15 13 12 33 33 H 1.08001 * 120.41465 * 359.70624 * 19 18 16 34 34 H 1.07996 * 119.62011 * 179.97438 * 20 19 18 35 35 H 1.07998 * 119.61937 * 180.02562 * 22 21 20 36 36 H 1.07995 * 120.41913 * 179.97438 * 23 22 21 37 37 H 1.08997 * 115.54926 * 274.33452 * 24 16 15 38 38 H 1.09000 * 117.49759 * 0.02562 * 25 24 16 39 39 H 1.09005 * 117.49732 * 145.01972 * 25 24 16 40 40 H 1.09001 * 117.50102 * 252.50616 * 26 25 24 41 41 H 1.09006 * 117.49910 * 107.49101 * 26 25 24 42 42 H 1.08001 * 119.94776 * 179.72390 * 27 12 11 43 43 H 1.07995 * 120.05816 * 180.25697 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 3.0942 1.6963 -1.2125 5 1 1.2756 2.7464 0.0006 6 1 3.0942 1.6963 1.2125 7 6 2.0075 -1.2145 0.0005 8 1 3.0484 -1.2369 0.2875 9 6 1.3530 -2.4071 -0.3739 10 6 1.8264 -3.6495 0.0924 11 6 1.1911 -4.7990 -0.2724 12 6 0.0701 -4.7466 -1.1096 13 6 -0.6141 -5.9947 -1.5022 14 8 -0.2041 -7.0656 -1.0983 15 7 -1.6937 -5.9466 -2.3076 16 6 -2.3729 -7.1849 -2.6968 17 1 -2.3383 -7.8937 -1.8694 18 6 -3.8089 -6.8836 -3.0404 19 6 -4.8262 -7.7438 -2.6563 20 6 -6.1314 -7.4342 -2.9888 21 7 -6.4135 -6.3366 -3.6631 22 6 -5.4720 -5.4956 -4.0444 23 6 -4.1443 -5.7391 -3.7478 24 6 -1.6729 -7.7893 -3.9157 25 6 -1.2639 -9.2615 -3.8376 26 6 -0.1976 -8.1666 -3.7680 27 6 -0.4008 -3.5149 -1.5800 28 6 0.2244 -2.3595 -1.2159 29 1 -0.4850 0.8401 0.0004 30 1 2.6918 -3.6909 0.7372 31 1 1.5536 -5.7518 0.0843 32 1 -2.0209 -5.0921 -2.6295 33 1 -4.6010 -8.6466 -2.1081 34 1 -6.9295 -8.0993 -2.6938 35 1 -5.7416 -4.6065 -4.5949 36 1 -3.3777 -5.0469 -4.0630 37 1 -2.0005 -7.4081 -4.8829 38 1 -1.4939 -9.7996 -2.9180 39 1 -1.3227 -9.8494 -4.7536 40 1 0.4454 -8.0342 -4.6382 41 1 0.2744 -7.9843 -2.8025 42 1 -1.2632 -3.4797 -2.2292 43 1 -0.1421 -1.4095 -1.5759 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890913469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:39 Heat of formation + Delta-G solvation = 37.921971 kcal Electronic energy + Delta-G solvation = -25860.096334 eV Core-core repulsion = 22256.247992 eV Total energy + Delta-G solvation = -3603.848343 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.60845 -39.28991 -37.63993 -36.62290 -34.46258 -33.90883 -32.30120 -31.32540 -30.18999 -29.49053 -27.34850 -25.62110 -23.71107 -22.67796 -22.20749 -22.04673 -21.02969 -20.28418 -19.67266 -17.65760 -17.52529 -16.55198 -16.22353 -15.87440 -15.71245 -15.44809 -14.88534 -14.72087 -14.08512 -13.96627 -13.83909 -13.75612 -13.26984 -13.15644 -12.80032 -12.42242 -12.13243 -12.08469 -11.89713 -11.66849 -11.48813 -11.29995 -11.21501 -11.02119 -10.67808 -10.34518 -10.28597 -10.09473 -9.73708 -9.60450 -9.59230 -9.38916 -9.30423 -9.01273 -8.64586 -7.77024 -7.59316 -7.07899 -4.64843 0.98558 1.06258 2.17434 2.89300 2.91721 2.95477 2.99341 3.45183 3.67146 3.70717 3.80987 4.02500 4.31511 4.39804 4.50352 4.66377 4.89218 4.96252 5.01460 5.09713 5.17495 5.21979 5.47511 5.52132 5.56629 5.67199 5.71327 5.82188 5.93287 5.98584 6.03952 6.13723 6.25164 6.26950 6.52819 6.54704 6.72450 6.78274 6.85061 6.99996 7.08646 7.38551 7.59777 7.73736 7.81264 7.81515 8.02441 8.14611 8.35165 8.58524 8.70625 8.98982 9.83941 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.003106 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.446932 B = 9011.621797 C =10380.312676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.020 4.020 12 C -0.286 4.286 13 C 0.578 3.422 14 O -0.571 6.571 15 N -0.733 5.733 16 C 0.217 3.783 17 H 0.097 0.903 18 C -0.035 4.035 19 C -0.161 4.161 20 C 0.099 3.901 21 N -0.489 5.489 22 C 0.102 3.898 23 C -0.166 4.166 24 C -0.166 4.166 25 C -0.173 4.173 26 C -0.175 4.175 27 C -0.062 4.062 28 C -0.178 4.178 29 H 0.288 0.712 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.397 0.603 33 H 0.136 0.864 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.126 0.874 42 H 0.087 0.913 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.561 -8.259 -7.588 13.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.126 3.874 10 C -0.259 4.259 11 C -0.039 4.039 12 C -0.290 4.290 13 C 0.374 3.626 14 O -0.454 6.454 15 N -0.386 5.386 16 C 0.112 3.888 17 H 0.115 0.885 18 C -0.044 4.044 19 C -0.181 4.181 20 C -0.058 4.058 21 N -0.198 5.198 22 C -0.055 4.055 23 C -0.186 4.186 24 C -0.186 4.186 25 C -0.211 4.211 26 C -0.211 4.211 27 C -0.081 4.081 28 C -0.197 4.197 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.233 0.767 33 H 0.154 0.846 34 H 0.173 0.827 35 H 0.174 0.826 36 H 0.153 0.847 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.144 0.856 42 H 0.105 0.895 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.367 -8.653 -7.483 14.173 hybrid contribution 0.935 1.079 -0.009 1.428 sum -7.432 -7.574 -7.492 12.989 Atomic orbital electron populations 1.69734 1.07924 1.30228 1.31432 1.26106 0.94821 1.01915 0.91874 0.86253 0.80218 0.79399 0.80380 1.18443 1.20016 1.18637 1.19839 0.98441 0.91214 1.37433 0.89703 1.17779 0.90342 0.92164 0.87100 1.20718 1.04638 0.92659 1.07885 1.20347 0.92852 0.97133 0.93598 1.18841 1.04611 0.90913 1.14659 1.18547 0.78371 0.89689 0.76018 1.90559 1.66357 1.31526 1.56932 1.46010 1.31841 1.08106 1.52628 1.19197 0.85681 0.88144 0.95794 0.88493 1.20381 0.95414 0.94047 0.94573 1.22012 0.93530 1.00880 1.01662 1.22737 0.95302 0.93811 0.93931 1.67672 1.37584 1.03694 1.10847 1.22754 0.88643 0.97782 0.96320 1.22009 0.98338 0.98166 1.00094 1.22573 0.99192 0.98202 0.98640 1.22910 1.04742 0.90672 1.02729 1.23340 0.90920 1.01632 1.05239 1.20451 0.97282 0.92657 0.97747 1.20971 0.99932 0.96884 1.01925 0.90117 0.88389 0.88089 0.76695 0.84621 0.82702 0.82600 0.84712 0.88161 0.88784 0.89223 0.89534 0.85650 0.89540 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.13 10.95 55.56 0.61 -17.52 16 2 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 3 Si 0.91 16.97 29.60 -169.99 -5.03 11.94 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.44 -10.79 9.04 -37.75 -0.34 -11.13 16 8 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 9 C 0.13 3.23 5.57 -106.80 -0.60 2.63 16 10 C -0.24 -5.66 9.73 -39.27 -0.38 -6.05 16 11 C -0.02 -0.46 9.52 -39.61 -0.38 -0.84 16 12 C -0.29 -6.27 5.89 -104.73 -0.62 -6.89 16 13 C 0.58 11.49 7.09 -12.42 -0.09 11.40 16 14 O -0.57 -12.34 13.35 5.29 0.07 -12.27 16 15 N -0.73 -11.64 4.96 -55.94 -0.28 -11.92 16 16 C 0.22 2.96 2.51 -69.08 -0.17 2.78 16 17 H 0.10 1.45 7.23 -51.93 -0.38 1.08 16 18 C -0.04 -0.42 4.96 -104.32 -0.52 -0.94 16 19 C -0.16 -1.71 9.78 -39.44 -0.39 -2.09 16 20 C 0.10 1.03 11.18 -17.55 -0.20 0.84 16 21 N -0.49 -5.88 10.36 -13.25 -0.14 -6.01 16 22 C 0.10 1.11 11.18 -17.55 -0.20 0.91 16 23 C -0.17 -1.85 9.15 -39.44 -0.36 -2.21 16 24 C -0.17 -2.12 5.35 -90.62 -0.48 -2.61 16 25 C -0.17 -2.04 10.18 -26.74 -0.27 -2.31 16 26 C -0.17 -2.47 9.73 -26.74 -0.26 -2.73 16 27 C -0.06 -1.34 9.47 -39.61 -0.38 -1.71 16 28 C -0.18 -4.25 8.64 -39.27 -0.34 -4.59 16 29 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 30 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 31 H 0.10 2.22 7.63 -52.49 -0.40 1.82 16 32 H 0.40 5.79 4.95 -40.82 -0.20 5.59 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.14 1.34 7.01 -52.49 -0.37 0.97 16 37 H 0.10 1.20 8.11 -51.93 -0.42 0.78 16 38 H 0.09 1.10 8.05 -51.93 -0.42 0.68 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.13 2.19 5.01 -51.93 -0.26 1.93 16 42 H 0.09 1.57 6.37 -52.49 -0.33 1.24 16 43 H 0.12 2.90 6.16 -52.49 -0.32 2.58 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -27.78 359.91 -10.58 -38.36 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -5.19 Total: 15.91 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -6.05 Total: -23.92 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.19 Total: -35.45 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.07 Total: -12.27 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.94 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.78 -10.58 -38.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890913469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.286 kcal (2) G-P(sol) polarization free energy of solvation -27.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds