Wall clock time and date at job start Tue Mar 31 2020 13:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86790 * 120.00247 * 2 1 4 4 H 1.48497 * 109.47262 * 239.99987 * 3 2 1 5 5 H 1.48497 * 109.47296 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47263 * 119.99950 * 3 2 1 7 7 C 1.40232 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99546 * 197.86616 * 7 2 1 9 9 C 1.41102 * 120.00110 * 17.86883 * 7 2 1 10 10 C 1.40889 * 120.10656 * 204.63647 * 9 7 2 11 11 C 1.36319 * 119.89483 * 180.02562 * 10 9 7 12 12 C 1.40007 * 120.10588 * 0.02562 * 11 10 9 13 13 C 1.47645 * 119.89121 * 179.97438 * 12 11 10 14 14 O 1.21582 * 120.00002 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99748 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00068 * 180.02562 * 15 13 12 17 17 H 1.09004 * 109.46878 * 35.00250 * 16 15 13 18 18 C 1.50698 * 109.47351 * 155.00107 * 16 15 13 19 19 C 1.38651 * 120.79502 * 220.00410 * 18 16 15 20 20 C 1.38200 * 119.16421 * 179.97438 * 19 18 16 21 21 N 1.31870 * 120.76281 * 0.02562 * 20 19 18 22 22 C 1.31868 * 121.73168 * 359.95630 * 21 20 19 23 23 C 1.38209 * 120.76100 * 0.04159 * 22 21 20 24 24 C 1.53001 * 109.47604 * 275.00411 * 16 15 13 25 25 C 1.52997 * 117.49999 * 128.61603 * 24 16 15 26 26 C 1.52994 * 60.00110 * 252.51359 * 25 24 16 27 27 C 1.40006 * 120.21070 * 0.23858 * 12 11 10 28 28 C 1.36325 * 120.10959 * 359.47709 * 27 12 11 29 29 H 0.97008 * 119.99939 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.04659 * 359.97438 * 10 9 7 31 31 H 1.08001 * 119.94367 * 179.97438 * 11 10 9 32 32 H 0.97002 * 119.99924 * 0.02562 * 15 13 12 33 33 H 1.08001 * 120.41465 * 359.70624 * 19 18 16 34 34 H 1.07996 * 119.62011 * 179.97438 * 20 19 18 35 35 H 1.07998 * 119.61937 * 180.02562 * 22 21 20 36 36 H 1.07995 * 120.41913 * 179.97438 * 23 22 21 37 37 H 1.08997 * 115.54926 * 274.33452 * 24 16 15 38 38 H 1.09000 * 117.49759 * 0.02562 * 25 24 16 39 39 H 1.09005 * 117.49732 * 145.01972 * 25 24 16 40 40 H 1.09001 * 117.50102 * 252.50616 * 26 25 24 41 41 H 1.09006 * 117.49910 * 107.49101 * 26 25 24 42 42 H 1.08001 * 119.94776 * 179.72390 * 27 12 11 43 43 H 1.07995 * 120.05816 * 180.25697 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 3.0942 1.6963 -1.2125 5 1 1.2756 2.7464 0.0006 6 1 3.0942 1.6963 1.2125 7 6 2.0075 -1.2145 0.0005 8 1 3.0484 -1.2369 0.2875 9 6 1.3530 -2.4071 -0.3739 10 6 1.8264 -3.6495 0.0924 11 6 1.1911 -4.7990 -0.2724 12 6 0.0701 -4.7466 -1.1096 13 6 -0.6141 -5.9947 -1.5022 14 8 -0.2041 -7.0656 -1.0983 15 7 -1.6937 -5.9466 -2.3076 16 6 -2.3729 -7.1849 -2.6968 17 1 -2.3383 -7.8937 -1.8694 18 6 -3.8089 -6.8836 -3.0404 19 6 -4.8262 -7.7438 -2.6563 20 6 -6.1314 -7.4342 -2.9888 21 7 -6.4135 -6.3366 -3.6631 22 6 -5.4720 -5.4956 -4.0444 23 6 -4.1443 -5.7391 -3.7478 24 6 -1.6729 -7.7893 -3.9157 25 6 -1.2639 -9.2615 -3.8376 26 6 -0.1976 -8.1666 -3.7680 27 6 -0.4008 -3.5149 -1.5800 28 6 0.2244 -2.3595 -1.2159 29 1 -0.4850 0.8401 0.0004 30 1 2.6918 -3.6909 0.7372 31 1 1.5536 -5.7518 0.0843 32 1 -2.0209 -5.0921 -2.6295 33 1 -4.6010 -8.6466 -2.1081 34 1 -6.9295 -8.0993 -2.6938 35 1 -5.7416 -4.6065 -4.5949 36 1 -3.3777 -5.0469 -4.0630 37 1 -2.0005 -7.4081 -4.8829 38 1 -1.4939 -9.7996 -2.9180 39 1 -1.3227 -9.8494 -4.7536 40 1 0.4454 -8.0342 -4.6382 41 1 0.2744 -7.9843 -2.8025 42 1 -1.2632 -3.4797 -2.2292 43 1 -0.1421 -1.4095 -1.5759 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890913469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:39 Heat of formation + Delta-G solvation = 24.649645 kcal Electronic energy + Delta-G solvation = -25860.671866 eV Core-core repulsion = 22256.247992 eV Total energy + Delta-G solvation = -3604.423874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.63370 -40.60967 -39.17712 -38.01044 -35.71447 -35.58668 -33.46928 -32.16011 -31.85250 -31.29184 -28.64105 -27.20494 -24.58531 -23.81353 -23.47999 -23.17472 -22.79567 -21.56104 -21.08862 -19.36757 -18.88106 -17.69425 -17.46194 -17.06887 -16.90801 -16.58558 -16.13278 -15.83901 -15.74579 -15.36842 -15.05382 -14.81758 -14.56703 -14.44828 -14.37189 -13.91929 -13.68908 -13.38353 -13.22774 -13.05597 -12.85786 -12.64282 -12.51473 -12.42440 -12.24460 -11.79059 -11.39862 -11.36549 -11.30135 -11.11238 -10.72184 -10.54808 -10.48153 -10.10520 -9.98506 -9.57455 -9.40937 -8.79651 -6.48515 0.18077 0.18897 0.44826 1.15258 1.38761 1.44122 1.51865 2.10949 2.17330 2.22523 2.77225 2.85875 2.96239 3.36827 3.59698 3.68618 3.81100 3.90447 4.08654 4.10197 4.13795 4.18508 4.21609 4.30218 4.39376 4.45110 4.63044 4.67214 4.78511 4.87626 4.92211 4.96985 4.99486 5.02927 5.16093 5.19673 5.27339 5.30541 5.36541 5.56559 5.60224 5.73904 5.82445 5.94297 5.99269 6.22966 6.53800 6.66695 6.77152 6.88940 7.00730 7.43972 8.15253 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.003106 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.446932 B = 9011.621797 C =10380.312676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.039 3.961 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.475 4.475 8 H 0.085 0.915 9 C 0.102 3.898 10 C -0.255 4.255 11 C -0.030 4.030 12 C -0.292 4.292 13 C 0.580 3.420 14 O -0.590 6.590 15 N -0.719 5.719 16 C 0.220 3.780 17 H 0.083 0.917 18 C -0.047 4.047 19 C -0.162 4.162 20 C 0.096 3.904 21 N -0.509 5.509 22 C 0.096 3.904 23 C -0.171 4.171 24 C -0.162 4.162 25 C -0.153 4.153 26 C -0.196 4.196 27 C -0.054 4.054 28 C -0.198 4.198 29 H 0.297 0.703 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.404 0.596 33 H 0.153 0.847 34 H 0.182 0.818 35 H 0.178 0.822 36 H 0.145 0.855 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.011 -8.269 -8.837 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.502 4.502 8 H 0.103 0.897 9 C 0.099 3.901 10 C -0.274 4.274 11 C -0.050 4.050 12 C -0.297 4.297 13 C 0.374 3.626 14 O -0.474 6.474 15 N -0.370 5.370 16 C 0.116 3.884 17 H 0.101 0.899 18 C -0.056 4.056 19 C -0.182 4.182 20 C -0.060 4.060 21 N -0.219 5.219 22 C -0.060 4.060 23 C -0.191 4.191 24 C -0.182 4.182 25 C -0.190 4.190 26 C -0.233 4.233 27 C -0.073 4.073 28 C -0.217 4.217 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.242 0.758 33 H 0.170 0.830 34 H 0.199 0.801 35 H 0.195 0.805 36 H 0.162 0.838 37 H 0.132 0.868 38 H 0.112 0.888 39 H 0.132 0.868 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.138 0.862 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.847 -8.679 -8.748 15.774 hybrid contribution 1.302 0.947 0.372 1.653 sum -8.545 -7.732 -8.376 14.246 Atomic orbital electron populations 1.69756 1.09204 1.31673 1.31455 1.26906 0.95536 1.04768 0.90815 0.85172 0.78876 0.75049 0.80278 1.18214 1.18778 1.18358 1.20100 0.98787 0.92288 1.39066 0.89714 1.18118 0.91238 0.92842 0.87875 1.20858 1.05221 0.92831 1.08486 1.20496 0.93423 0.97003 0.94041 1.19166 1.04348 0.92208 1.13959 1.18248 0.79214 0.88520 0.76637 1.90560 1.67135 1.31875 1.57839 1.45856 1.30469 1.09585 1.51138 1.19234 0.86819 0.86616 0.95741 0.89908 1.20286 0.94417 0.95117 0.95795 1.22224 0.93339 1.01243 1.01369 1.23188 0.95973 0.93705 0.93162 1.67724 1.38218 1.04431 1.11496 1.23121 0.88392 0.98326 0.96186 1.22135 0.98853 0.98078 0.99993 1.22582 0.97745 0.99170 0.98682 1.22991 1.02005 0.90150 1.03866 1.23203 0.91840 1.04505 1.03787 1.20707 0.97684 0.91648 0.97301 1.21003 1.00526 0.97400 1.02756 0.89179 0.87922 0.87794 0.75823 0.82973 0.80098 0.80530 0.83771 0.86789 0.88819 0.86776 0.88734 0.89060 0.86192 0.86913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.75 10.95 21.87 0.24 -37.51 16 2 C 0.04 1.79 5.14 85.35 0.44 2.23 16 3 Si 0.99 34.45 29.60 68.60 2.03 36.48 16 4 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 5 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 6 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 7 C -0.48 -23.81 9.04 23.46 0.21 -23.60 16 8 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 9 C 0.10 5.26 5.57 -21.28 -0.12 5.14 16 10 C -0.25 -12.47 9.73 22.47 0.22 -12.25 16 11 C -0.03 -1.43 9.52 22.25 0.21 -1.22 16 12 C -0.29 -12.92 5.89 -19.94 -0.12 -13.04 16 13 C 0.58 22.95 7.09 86.73 0.62 23.57 16 14 O -0.59 -25.75 13.35 -3.97 -0.05 -25.81 16 15 N -0.72 -22.02 4.96 -449.16 -2.23 -24.25 16 16 C 0.22 5.69 2.51 44.25 0.11 5.80 16 17 H 0.08 2.41 7.23 -2.39 -0.02 2.39 16 18 C -0.05 -1.03 4.96 -19.67 -0.10 -1.13 16 19 C -0.16 -3.06 9.78 22.36 0.22 -2.84 16 20 C 0.10 1.77 11.18 84.68 0.95 2.72 16 21 N -0.51 -11.09 10.36 -195.85 -2.03 -13.12 16 22 C 0.10 1.88 11.18 84.68 0.95 2.82 16 23 C -0.17 -3.42 9.15 22.36 0.20 -3.21 16 24 C -0.16 -3.85 5.35 -10.79 -0.06 -3.90 16 25 C -0.15 -3.29 10.18 30.59 0.31 -2.98 16 26 C -0.20 -5.42 9.73 30.59 0.30 -5.12 16 27 C -0.05 -2.33 9.47 22.25 0.21 -2.12 16 28 C -0.20 -9.61 8.64 22.47 0.19 -9.41 16 29 H 0.30 12.53 8.29 -92.70 -0.77 11.76 16 30 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 31 H 0.10 4.71 7.63 -2.91 -0.02 4.69 16 32 H 0.40 11.10 4.95 -92.71 -0.46 10.64 16 33 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 35 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.14 2.52 7.01 -2.91 -0.02 2.50 16 37 H 0.11 2.42 8.11 -2.39 -0.02 2.40 16 38 H 0.09 2.03 8.05 -2.39 -0.02 2.01 16 39 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.09 2.39 8.14 -2.39 -0.02 2.38 16 41 H 0.09 3.24 5.01 -2.38 -0.01 3.23 16 42 H 0.12 4.19 6.37 -2.91 -0.02 4.17 16 43 H 0.11 5.57 6.16 -2.91 -0.02 5.55 16 Total: -1.00 -60.96 359.91 3.29 -57.66 By element: Atomic # 1 Polarization: 44.50 SS G_CDS: 0.59 Total: 45.09 kcal Atomic # 6 Polarization: -43.29 SS G_CDS: 4.75 Total: -38.54 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -4.02 Total: -74.88 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.05 Total: -25.81 kcal Atomic # 14 Polarization: 34.45 SS G_CDS: 2.03 Total: 36.48 kcal Total: -60.96 3.29 -57.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890913469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.311 kcal (2) G-P(sol) polarization free energy of solvation -60.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds