Wall clock time and date at job start Tue Mar 31 2020 13:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86796 * 120.00009 * 2 1 4 4 H 1.48506 * 109.47121 * 239.99912 * 3 2 1 5 5 H 1.48500 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47213 * 119.99944 * 3 2 1 7 7 C 1.38898 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00096 * 185.62871 * 7 2 1 9 9 N 1.37218 * 119.99813 * 5.63024 * 7 2 1 10 10 C 1.34773 * 119.99711 * 174.42442 * 9 7 2 11 11 O 1.21273 * 119.99638 * 184.84082 * 10 9 7 12 12 C 1.50696 * 120.00304 * 4.83595 * 10 9 7 13 13 C 1.52994 * 109.47154 * 174.35340 * 12 10 9 14 14 H 1.08995 * 110.27291 * 56.15110 * 13 12 10 15 15 C 1.54349 * 110.30348 * 294.07719 * 13 12 10 16 16 C 1.54349 * 102.39266 * 214.72731 * 15 13 12 17 17 C 1.51372 * 105.17099 * 26.34769 * 16 15 13 18 18 C 1.38495 * 130.39303 * 162.83588 * 17 16 15 19 19 C 1.38100 * 120.21297 * 180.09707 * 18 17 16 20 20 C 1.38253 * 119.94034 * 359.88352 * 19 18 17 21 21 C 1.38111 * 119.93028 * 0.06191 * 20 19 18 22 22 C 1.38217 * 109.75621 * 342.81468 * 17 16 15 23 23 C 1.39426 * 119.99614 * 354.42533 * 9 7 2 24 24 C 1.39063 * 119.69821 * 95.01196 * 23 9 7 25 25 C 1.38378 * 119.09994 * 179.97438 * 24 23 9 26 26 C 1.38831 * 118.49418 * 0.02562 * 25 24 23 27 27 C 1.38148 * 119.30543 * 359.97438 * 26 25 24 28 28 N 1.31877 * 120.85422 * 359.74277 * 27 26 25 29 29 H 0.96998 * 120.00200 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47174 * 294.35500 * 12 10 9 31 31 H 1.08998 * 109.47307 * 54.35186 * 12 10 9 32 32 H 1.09004 * 110.82318 * 332.95364 * 15 13 12 33 33 H 1.09000 * 110.82252 * 96.50062 * 15 13 12 34 34 H 1.09008 * 110.30122 * 145.26927 * 16 15 13 35 35 H 1.08998 * 110.30321 * 267.42158 * 16 15 13 36 36 H 1.07993 * 119.89393 * 359.97438 * 18 17 16 37 37 H 1.08004 * 120.03466 * 179.97438 * 19 18 17 38 38 H 1.07994 * 120.03849 * 180.02562 * 20 19 18 39 39 H 1.08003 * 119.88974 * 179.97438 * 21 20 19 40 40 H 1.08009 * 120.45000 * 359.95624 * 24 23 9 41 41 H 1.08003 * 120.75411 * 179.97438 * 25 24 23 42 42 H 1.07991 * 120.34795 * 179.97438 * 26 25 24 43 43 H 1.08007 * 119.56945 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0087 -1.2029 -0.0005 8 1 3.0847 -1.2051 0.0912 9 7 1.3275 -2.3883 -0.1177 10 6 2.0063 -3.5470 -0.2313 11 8 1.4076 -4.5842 -0.4228 12 6 3.5092 -3.5540 -0.1205 13 6 4.0156 -4.9975 -0.1436 14 1 3.6674 -5.5056 -1.0428 15 6 3.5400 -5.7521 1.1160 16 6 4.7283 -6.6933 1.4068 17 6 5.9370 -5.9993 0.8163 18 6 7.2882 -6.2045 1.0404 19 6 8.2267 -5.4372 0.3788 20 6 7.8172 -4.4625 -0.5120 21 6 6.4702 -4.2572 -0.7377 22 6 5.5275 -5.0249 -0.0744 23 6 -0.0667 -2.3939 -0.1191 24 6 -0.7545 -2.3838 -1.3277 25 6 -2.1382 -2.3901 -1.3147 26 6 -2.7889 -2.4058 -0.0885 27 6 -2.0417 -2.4151 1.0735 28 7 -0.7237 -2.4144 1.0301 29 1 -0.4850 0.8400 0.0004 30 1 3.9379 -3.0051 -0.9590 31 1 3.8068 -3.0794 0.8145 32 1 3.3808 -5.0617 1.9444 33 1 2.6354 -6.3233 0.9071 34 1 4.8540 -6.8227 2.4818 35 1 4.5731 -7.6584 0.9245 36 1 7.6089 -6.9656 1.7362 37 1 9.2797 -5.5994 0.5561 38 1 8.5498 -3.8619 -1.0306 39 1 6.1511 -3.4953 -1.4334 40 1 -0.2159 -2.3710 -2.2639 41 1 -2.6992 -2.3822 -2.2375 42 1 -3.8679 -2.4106 -0.0434 43 1 -2.5436 -2.4269 2.0298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892465084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:58 Heat of formation + Delta-G solvation = 37.823973 kcal Electronic energy + Delta-G solvation = -26716.196767 eV Core-core repulsion = 23112.344174 eV Total energy + Delta-G solvation = -3603.852592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.20326 -39.48617 -37.87622 -35.66829 -34.76343 -32.00114 -31.71301 -31.23456 -29.99112 -28.95153 -28.44917 -25.20770 -24.96420 -22.44384 -22.38015 -22.18592 -20.76920 -20.10633 -19.11564 -17.87446 -16.71153 -15.93602 -15.53241 -15.26873 -15.09654 -14.94804 -14.77549 -14.61813 -14.26159 -14.01034 -13.48292 -13.13037 -12.99237 -12.55796 -12.46669 -12.38889 -12.29233 -12.11125 -11.59547 -11.44247 -11.24765 -11.20563 -11.04063 -10.97623 -10.66122 -10.58145 -10.51503 -10.38450 -10.25228 -9.73578 -8.79950 -8.72378 -8.64403 -8.45372 -8.32143 -7.91826 -7.89739 -6.31152 -4.06167 1.49426 1.52114 2.34416 2.48043 3.07463 3.14869 3.16357 3.68337 3.87975 3.96998 4.41936 4.61702 4.83572 4.98577 5.06361 5.09495 5.14361 5.30612 5.34369 5.49507 5.63430 5.68671 5.71679 5.74386 5.85112 5.87817 5.90629 6.02425 6.13180 6.22576 6.24691 6.29864 6.36149 6.41467 6.48376 6.55427 6.61127 6.65720 6.75064 6.76171 6.87996 7.13733 7.15647 7.15979 7.27543 7.44284 7.81985 8.33429 8.94393 9.20038 9.37982 9.71497 10.57982 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.004071 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.928671 B = 6875.946644 C = 8301.908992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.036 3.964 3 Si 0.932 3.068 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.109 0.891 9 N -0.414 5.414 10 C 0.477 3.523 11 O -0.591 6.591 12 C -0.109 4.109 13 C -0.033 4.033 14 H 0.092 0.908 15 C -0.107 4.107 16 C -0.084 4.084 17 C -0.096 4.096 18 C -0.112 4.112 19 C -0.128 4.128 20 C -0.124 4.124 21 C -0.105 4.105 22 C -0.081 4.081 23 C 0.470 3.530 24 C -0.145 4.145 25 C -0.076 4.076 26 C -0.211 4.211 27 C 0.115 3.885 28 N -0.485 5.485 29 H 0.274 0.726 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.733 -6.299 -0.439 9.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.169 4.169 3 Si 0.759 3.241 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.126 0.874 9 N -0.133 5.133 10 C 0.267 3.733 11 O -0.476 6.476 12 C -0.149 4.149 13 C -0.052 4.052 14 H 0.110 0.890 15 C -0.144 4.144 16 C -0.121 4.121 17 C -0.096 4.096 18 C -0.130 4.130 19 C -0.146 4.146 20 C -0.142 4.142 21 C -0.123 4.123 22 C -0.081 4.081 23 C 0.243 3.757 24 C -0.168 4.168 25 C -0.102 4.102 26 C -0.232 4.232 27 C -0.043 4.043 28 N -0.197 5.197 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.758 -6.626 0.251 10.206 hybrid contribution -0.085 1.390 -0.720 1.568 sum 7.673 -5.236 -0.469 9.301 Atomic orbital electron populations 1.69456 1.05709 1.27595 1.47236 1.25253 0.95659 0.99905 0.96112 0.85895 0.78839 0.80426 0.78978 1.19727 1.20816 1.19744 1.19731 0.92641 0.81655 1.52171 0.87386 1.41291 1.01783 1.06764 1.63419 1.20058 0.89488 0.82554 0.81210 1.90560 1.70638 1.31897 1.54463 1.21443 0.93320 0.96239 1.03902 1.20475 0.88604 0.96025 1.00046 0.88983 1.22316 0.97327 0.97819 0.96951 1.21127 0.91917 0.98714 1.00327 1.20686 0.94031 0.97220 0.97656 1.20576 0.91779 1.00173 1.00514 1.20959 0.98951 0.96857 0.97799 1.21002 0.95526 0.98634 0.99046 1.20710 0.92316 0.99428 0.99884 1.20741 0.95711 0.95578 0.96056 1.17366 0.84236 0.86327 0.87726 1.21565 0.94280 1.02628 0.98310 1.21047 0.93945 0.97922 0.97288 1.21638 0.99628 1.07912 0.93994 1.22066 0.89235 0.96005 0.97026 1.67112 1.09355 1.12704 1.30508 0.91349 0.89641 0.89542 0.91206 0.89630 0.91096 0.90501 0.86668 0.86366 0.86205 0.86064 0.87027 0.86762 0.86836 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.61 9.76 55.49 0.54 -22.07 16 2 C 0.04 0.90 5.44 -17.49 -0.10 0.80 16 3 Si 0.93 19.48 29.55 -169.99 -5.02 14.46 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.34 -8.39 9.37 -14.90 -0.14 -8.53 16 8 H 0.11 2.47 6.32 -52.49 -0.33 2.14 16 9 N -0.41 -10.52 2.74 -60.71 -0.17 -10.69 16 10 C 0.48 11.18 7.31 -10.99 -0.08 11.10 16 11 O -0.59 -14.91 14.89 5.56 0.08 -14.82 16 12 C -0.11 -2.05 3.38 -27.89 -0.09 -2.14 16 13 C -0.03 -0.55 2.50 -90.74 -0.23 -0.78 16 14 H 0.09 1.62 7.94 -51.93 -0.41 1.21 16 15 C -0.11 -1.72 5.68 -25.32 -0.14 -1.87 16 16 C -0.08 -1.11 6.77 -26.85 -0.18 -1.29 16 17 C -0.10 -1.34 6.14 -104.20 -0.64 -1.98 16 18 C -0.11 -1.38 10.04 -39.54 -0.40 -1.78 16 19 C -0.13 -1.46 10.05 -39.63 -0.40 -1.86 16 20 C -0.12 -1.49 10.05 -39.62 -0.40 -1.89 16 21 C -0.11 -1.44 9.72 -39.53 -0.38 -1.83 16 22 C -0.08 -1.22 5.61 -104.21 -0.58 -1.80 16 23 C 0.47 12.08 2.92 -154.64 -0.45 11.62 16 24 C -0.15 -3.44 9.30 -39.22 -0.36 -3.80 16 25 C -0.08 -1.54 10.17 -39.31 -0.40 -1.94 16 26 C -0.21 -4.09 10.11 -39.40 -0.40 -4.49 16 27 C 0.12 2.48 11.18 -17.57 -0.20 2.28 16 28 N -0.48 -12.38 9.85 -12.34 -0.12 -12.50 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.09 1.50 7.67 -51.93 -0.40 1.10 16 31 H 0.09 1.63 7.66 -51.93 -0.40 1.23 16 32 H 0.07 1.19 7.86 -51.93 -0.41 0.78 16 33 H 0.09 1.48 7.64 -51.93 -0.40 1.09 16 34 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.54 7.77 -52.48 -0.41 1.13 16 40 H 0.11 2.58 8.06 -52.48 -0.42 2.15 16 41 H 0.11 1.91 8.06 -52.48 -0.42 1.49 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 43 H 0.13 2.41 8.06 -52.48 -0.42 1.99 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -30.48 357.68 -10.56 -41.05 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.69 Total: 9.36 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -5.57 Total: -10.17 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.25 Total: -45.26 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.08 Total: -14.82 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.48 -10.56 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892465084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.871 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds