Wall clock time and date at job start Tue Mar 31 2020 13:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86796 * 120.00009 * 2 1 4 4 H 1.48506 * 109.47121 * 239.99912 * 3 2 1 5 5 H 1.48500 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47213 * 119.99944 * 3 2 1 7 7 C 1.38898 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00096 * 185.62871 * 7 2 1 9 9 N 1.37218 * 119.99813 * 5.63024 * 7 2 1 10 10 C 1.34773 * 119.99711 * 174.42442 * 9 7 2 11 11 O 1.21273 * 119.99638 * 184.84082 * 10 9 7 12 12 C 1.50696 * 120.00304 * 4.83595 * 10 9 7 13 13 C 1.52994 * 109.47154 * 174.35340 * 12 10 9 14 14 H 1.08995 * 110.27291 * 56.15110 * 13 12 10 15 15 C 1.54349 * 110.30348 * 294.07719 * 13 12 10 16 16 C 1.54349 * 102.39266 * 214.72731 * 15 13 12 17 17 C 1.51372 * 105.17099 * 26.34769 * 16 15 13 18 18 C 1.38495 * 130.39303 * 162.83588 * 17 16 15 19 19 C 1.38100 * 120.21297 * 180.09707 * 18 17 16 20 20 C 1.38253 * 119.94034 * 359.88352 * 19 18 17 21 21 C 1.38111 * 119.93028 * 0.06191 * 20 19 18 22 22 C 1.38217 * 109.75621 * 342.81468 * 17 16 15 23 23 C 1.39426 * 119.99614 * 354.42533 * 9 7 2 24 24 C 1.39063 * 119.69821 * 95.01196 * 23 9 7 25 25 C 1.38378 * 119.09994 * 179.97438 * 24 23 9 26 26 C 1.38831 * 118.49418 * 0.02562 * 25 24 23 27 27 C 1.38148 * 119.30543 * 359.97438 * 26 25 24 28 28 N 1.31877 * 120.85422 * 359.74277 * 27 26 25 29 29 H 0.96998 * 120.00200 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47174 * 294.35500 * 12 10 9 31 31 H 1.08998 * 109.47307 * 54.35186 * 12 10 9 32 32 H 1.09004 * 110.82318 * 332.95364 * 15 13 12 33 33 H 1.09000 * 110.82252 * 96.50062 * 15 13 12 34 34 H 1.09008 * 110.30122 * 145.26927 * 16 15 13 35 35 H 1.08998 * 110.30321 * 267.42158 * 16 15 13 36 36 H 1.07993 * 119.89393 * 359.97438 * 18 17 16 37 37 H 1.08004 * 120.03466 * 179.97438 * 19 18 17 38 38 H 1.07994 * 120.03849 * 180.02562 * 20 19 18 39 39 H 1.08003 * 119.88974 * 179.97438 * 21 20 19 40 40 H 1.08009 * 120.45000 * 359.95624 * 24 23 9 41 41 H 1.08003 * 120.75411 * 179.97438 * 25 24 23 42 42 H 1.07991 * 120.34795 * 179.97438 * 26 25 24 43 43 H 1.08007 * 119.56945 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0087 -1.2029 -0.0005 8 1 3.0847 -1.2051 0.0912 9 7 1.3275 -2.3883 -0.1177 10 6 2.0063 -3.5470 -0.2313 11 8 1.4076 -4.5842 -0.4228 12 6 3.5092 -3.5540 -0.1205 13 6 4.0156 -4.9975 -0.1436 14 1 3.6674 -5.5056 -1.0428 15 6 3.5400 -5.7521 1.1160 16 6 4.7283 -6.6933 1.4068 17 6 5.9370 -5.9993 0.8163 18 6 7.2882 -6.2045 1.0404 19 6 8.2267 -5.4372 0.3788 20 6 7.8172 -4.4625 -0.5120 21 6 6.4702 -4.2572 -0.7377 22 6 5.5275 -5.0249 -0.0744 23 6 -0.0667 -2.3939 -0.1191 24 6 -0.7545 -2.3838 -1.3277 25 6 -2.1382 -2.3901 -1.3147 26 6 -2.7889 -2.4058 -0.0885 27 6 -2.0417 -2.4151 1.0735 28 7 -0.7237 -2.4144 1.0301 29 1 -0.4850 0.8400 0.0004 30 1 3.9379 -3.0051 -0.9590 31 1 3.8068 -3.0794 0.8145 32 1 3.3808 -5.0617 1.9444 33 1 2.6354 -6.3233 0.9071 34 1 4.8540 -6.8227 2.4818 35 1 4.5731 -7.6584 0.9245 36 1 7.6089 -6.9656 1.7362 37 1 9.2797 -5.5994 0.5561 38 1 8.5498 -3.8619 -1.0306 39 1 6.1511 -3.4953 -1.4334 40 1 -0.2159 -2.3710 -2.2639 41 1 -2.6992 -2.3822 -2.2375 42 1 -3.8679 -2.4106 -0.0434 43 1 -2.5436 -2.4269 2.0298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892465084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:57 Heat of formation + Delta-G solvation = 23.166756 kcal Electronic energy + Delta-G solvation = -26716.832351 eV Core-core repulsion = 23112.344174 eV Total energy + Delta-G solvation = -3604.488177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62248 -40.95743 -39.55805 -37.00785 -36.43020 -33.60818 -33.21891 -32.94291 -31.40947 -30.34002 -29.59397 -26.99507 -26.43560 -24.08403 -23.81601 -23.49731 -21.82808 -21.49765 -20.80975 -19.58104 -18.27996 -17.32505 -17.13185 -16.98855 -16.59982 -16.28366 -16.08026 -15.98934 -15.65713 -15.50760 -15.12160 -14.59618 -14.15163 -14.09216 -13.80206 -13.77654 -13.71030 -13.52871 -13.29035 -12.95795 -12.89753 -12.69273 -12.47947 -12.32876 -12.18396 -11.98098 -11.79813 -11.65905 -11.57273 -11.52094 -10.59771 -10.45476 -10.27908 -9.74290 -9.65917 -9.63827 -9.37003 -8.16345 -5.99425 0.49910 0.54065 0.64190 0.79670 1.40795 1.43119 1.53060 1.88128 2.22427 2.69429 2.91977 3.14413 3.29055 3.52246 3.64027 3.96575 4.02992 4.11849 4.18863 4.21963 4.27372 4.29095 4.39800 4.51777 4.55577 4.57874 4.62240 4.70381 4.72690 4.80594 4.93557 4.97598 5.02691 5.07605 5.17236 5.19100 5.32965 5.34107 5.38455 5.47391 5.49970 5.63209 5.67310 5.68982 5.83909 6.07563 6.18085 6.47816 7.04614 7.39491 7.59500 7.86576 8.69545 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.004071 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.928671 B = 6875.946644 C = 8301.908992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C -0.010 4.010 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.355 4.355 8 H 0.121 0.879 9 N -0.429 5.429 10 C 0.466 3.534 11 O -0.618 6.618 12 C -0.096 4.096 13 C -0.027 4.027 14 H 0.074 0.926 15 C -0.107 4.107 16 C -0.075 4.075 17 C -0.108 4.108 18 C -0.115 4.115 19 C -0.122 4.122 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.104 4.104 23 C 0.441 3.559 24 C -0.175 4.175 25 C -0.072 4.072 26 C -0.199 4.199 27 C 0.098 3.902 28 N -0.526 5.526 29 H 0.269 0.731 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.141 0.859 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.153 0.847 42 H 0.162 0.838 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.152 -6.117 -0.278 11.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.212 4.212 3 Si 0.822 3.178 4 H -0.185 1.185 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.481 4.481 8 H 0.138 0.862 9 N -0.147 5.147 10 C 0.257 3.743 11 O -0.505 6.505 12 C -0.136 4.136 13 C -0.046 4.046 14 H 0.093 0.907 15 C -0.145 4.145 16 C -0.111 4.111 17 C -0.108 4.108 18 C -0.133 4.133 19 C -0.140 4.140 20 C -0.143 4.143 21 C -0.137 4.137 22 C -0.104 4.104 23 C 0.216 3.784 24 C -0.197 4.197 25 C -0.098 4.098 26 C -0.218 4.218 27 C -0.059 4.059 28 N -0.239 5.239 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.164 0.836 39 H 0.141 0.859 40 H 0.119 0.881 41 H 0.171 0.829 42 H 0.179 0.821 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.185 -6.456 0.408 11.234 hybrid contribution -0.609 1.288 -0.763 1.617 sum 8.575 -5.168 -0.355 10.018 Atomic orbital electron populations 1.69666 1.06978 1.27690 1.47843 1.26157 0.96494 1.02913 0.95594 0.84886 0.77534 0.76004 0.79351 1.18518 1.21175 1.19261 1.20159 0.93449 0.82007 1.52473 0.86166 1.41613 1.02361 1.07313 1.63438 1.20857 0.91205 0.81889 0.80329 1.90514 1.71678 1.32675 1.55607 1.21382 0.90124 0.98089 1.03968 1.20338 0.90509 0.94270 0.99462 0.90745 1.22214 0.97987 0.98038 0.96259 1.21047 0.90334 0.98219 1.01533 1.20821 0.95080 0.97222 0.97719 1.20907 0.90903 1.00709 1.00761 1.21394 1.00509 0.95641 0.96468 1.21346 0.95060 0.98881 0.98996 1.20895 0.93183 0.99571 1.00098 1.20613 0.94320 0.97480 0.98009 1.17653 0.84544 0.87736 0.88497 1.21675 0.96068 1.04630 0.97337 1.21536 0.92789 0.95929 0.99524 1.22107 1.01868 1.05229 0.92644 1.22727 0.88441 0.95368 0.99414 1.67067 1.11457 1.14374 1.31025 0.91999 0.88669 0.89762 0.92730 0.91704 0.89405 0.89374 0.84162 0.83115 0.83625 0.85885 0.88067 0.82917 0.82073 0.81970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.31 9.76 21.65 0.21 -47.10 16 2 C -0.01 -0.48 5.44 84.91 0.46 -0.02 16 3 Si 1.00 40.19 29.55 68.60 2.03 42.22 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.29 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.35 -18.29 9.37 84.01 0.79 -17.50 16 8 H 0.12 5.63 6.32 -2.91 -0.02 5.62 16 9 N -0.43 -22.83 2.74 -464.38 -1.27 -24.10 16 10 C 0.47 23.12 7.31 87.66 0.64 23.76 16 11 O -0.62 -33.21 14.89 -3.01 -0.04 -33.25 16 12 C -0.10 -3.79 3.38 29.84 0.10 -3.69 16 13 C -0.03 -0.95 2.50 -10.87 -0.03 -0.98 16 14 H 0.07 2.82 7.94 -2.39 -0.02 2.80 16 15 C -0.11 -3.66 5.68 31.51 0.18 -3.48 16 16 C -0.07 -1.95 6.77 30.52 0.21 -1.75 16 17 C -0.11 -2.92 6.14 -19.59 -0.12 -3.04 16 18 C -0.11 -2.50 10.04 22.30 0.22 -2.27 16 19 C -0.12 -2.38 10.05 22.24 0.22 -2.15 16 20 C -0.13 -2.67 10.05 22.24 0.22 -2.45 16 21 C -0.12 -3.17 9.72 22.30 0.22 -2.96 16 22 C -0.10 -3.13 5.61 -19.59 -0.11 -3.24 16 23 C 0.44 23.54 2.92 132.90 0.39 23.92 16 24 C -0.17 -8.51 9.30 22.50 0.21 -8.30 16 25 C -0.07 -2.84 10.17 22.45 0.23 -2.61 16 26 C -0.20 -7.30 10.11 22.39 0.23 -7.07 16 27 C 0.10 4.20 11.18 84.66 0.95 5.14 16 28 N -0.53 -27.63 9.85 -192.95 -1.90 -29.53 16 29 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 30 H 0.10 3.50 7.67 -2.39 -0.02 3.48 16 31 H 0.08 3.33 7.66 -2.39 -0.02 3.31 16 32 H 0.05 1.98 7.86 -2.39 -0.02 1.96 16 33 H 0.06 2.43 7.64 -2.39 -0.02 2.41 16 34 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 39 H 0.12 3.09 7.77 -2.91 -0.02 3.07 16 40 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 41 H 0.15 4.72 8.06 -2.91 -0.02 4.70 16 42 H 0.16 4.33 8.06 -2.92 -0.02 4.31 16 43 H 0.16 5.68 8.06 -2.91 -0.02 5.66 16 Total: -1.00 -69.49 357.68 5.04 -64.45 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 1.01 Total: 36.02 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 5.00 Total: -8.70 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -2.96 Total: -100.74 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.04 Total: -33.25 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -69.49 5.04 -64.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892465084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.612 kcal (2) G-P(sol) polarization free energy of solvation -69.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds