Wall clock time and date at job start Tue Mar 31 2020 13:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86804 * 120.00038 * 2 1 4 4 H 1.48507 * 109.46906 * 274.98575 * 3 2 1 5 5 H 1.48496 * 109.47006 * 34.98173 * 3 2 1 6 6 H 1.48495 * 109.47218 * 154.98579 * 3 2 1 7 7 C 1.38897 * 120.00403 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99894 * 189.27458 * 7 2 1 9 9 N 1.37205 * 119.99627 * 9.26948 * 7 2 1 10 10 C 1.34778 * 120.00103 * 229.94002 * 9 7 2 11 11 O 1.21277 * 120.00149 * 184.18008 * 10 9 7 12 12 C 1.50699 * 120.00066 * 4.17933 * 10 9 7 13 13 C 1.52995 * 115.54800 * 289.90723 * 12 10 9 14 14 C 1.50703 * 109.47471 * 296.82228 * 13 12 10 15 15 C 1.38232 * 119.99753 * 274.79064 * 14 13 12 16 16 C 1.38236 * 119.99466 * 179.78495 * 15 14 13 17 17 C 1.38233 * 120.00415 * 0.43788 * 16 15 14 18 18 C 1.38239 * 119.99474 * 359.81777 * 17 16 15 19 19 C 1.38227 * 120.00514 * 359.97304 * 18 17 16 20 20 C 1.52996 * 117.49927 * 144.23786 * 12 10 9 21 21 C 1.52995 * 117.49844 * 75.57594 * 12 10 9 22 22 C 1.39429 * 120.00209 * 49.93672 * 9 7 2 23 23 C 1.39065 * 119.69452 * 14.50790 * 22 9 7 24 24 C 1.38375 * 119.10022 * 179.97438 * 23 22 9 25 25 C 1.38821 * 118.49343 * 359.97438 * 24 23 22 26 26 C 1.38145 * 119.31349 * 0.27719 * 25 24 23 27 27 N 1.31890 * 120.84689 * 359.40353 * 26 25 24 28 28 H 0.97005 * 120.00316 * 4.96498 * 1 2 3 29 29 H 1.09001 * 109.47413 * 56.82722 * 13 12 10 30 30 H 1.09002 * 109.47206 * 176.82124 * 13 12 10 31 31 H 1.08000 * 120.00261 * 359.97438 * 15 14 13 32 32 H 1.08002 * 119.99630 * 180.27427 * 16 15 14 33 33 H 1.07997 * 120.00312 * 179.82792 * 17 16 15 34 34 H 1.08004 * 119.99231 * 179.97438 * 18 17 16 35 35 H 1.07994 * 120.00364 * 180.02562 * 19 18 17 36 36 H 1.09003 * 117.50368 * 359.97438 * 20 12 10 37 37 H 1.09005 * 117.50007 * 145.02610 * 20 12 10 38 38 H 1.09007 * 117.50135 * 214.97845 * 21 12 10 39 39 H 1.08997 * 117.50284 * 359.97438 * 21 12 10 40 40 H 1.07998 * 120.45175 * 359.97246 * 23 22 9 41 41 H 1.08004 * 120.75590 * 180.02562 * 24 23 22 42 42 H 1.07998 * 120.34874 * 180.02562 * 25 24 23 43 43 H 1.08002 * 119.57702 * 179.70241 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3902 2.1073 -1.3949 5 1 1.5021 2.6200 0.8027 6 1 3.5943 1.4121 0.5920 7 6 2.0086 -1.2028 -0.0005 8 1 3.0780 -1.2089 0.1502 9 7 1.3360 -2.3832 -0.1925 10 6 1.5274 -3.4134 0.6552 11 8 0.9920 -4.4807 0.4431 12 6 2.4066 -3.2391 1.8666 13 6 3.9028 -3.0955 1.5808 14 6 4.4156 -4.3597 0.9405 15 6 4.8079 -5.4243 1.7301 16 6 5.2741 -6.5855 1.1426 17 6 5.3566 -6.6787 -0.2341 18 6 4.9692 -5.6120 -1.0235 19 6 4.4990 -4.4524 -0.4362 20 6 1.9990 -3.9713 3.1467 21 6 1.8343 -2.4527 3.0476 22 6 0.4545 -2.5170 -1.2644 23 6 0.4805 -1.5869 -2.2979 24 6 -0.3994 -1.7319 -3.3560 25 6 -1.2781 -2.8065 -3.3442 26 6 -1.2524 -3.6895 -2.2820 27 7 -0.3982 -3.5294 -1.2900 28 1 -0.4851 0.8369 -0.0727 29 1 4.0648 -2.2549 0.9061 30 1 4.4359 -2.9193 2.5151 31 1 4.7472 -5.3501 2.8058 32 1 5.5764 -7.4190 1.7594 33 1 5.7234 -7.5849 -0.6930 34 1 5.0341 -5.6848 -2.0991 35 1 4.1960 -3.6193 -1.0529 36 1 1.0946 -4.5789 3.1128 37 1 2.7968 -4.3503 3.7855 38 1 2.5238 -1.8333 3.6214 39 1 0.8220 -2.0610 2.9483 40 1 1.1779 -0.7627 -2.2751 41 1 -0.4020 -1.0254 -4.1729 42 1 -1.9773 -2.9486 -4.1549 43 1 -1.9374 -4.5243 -2.2661 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892471921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:33 Heat of formation + Delta-G solvation = 71.635229 kcal Electronic energy + Delta-G solvation = -27706.152146 eV Core-core repulsion = 24103.765719 eV Total energy + Delta-G solvation = -3602.386426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.01527 -39.01619 -38.05935 -35.93912 -34.95147 -32.02837 -31.89895 -31.07973 -30.55344 -29.23328 -26.84339 -25.29968 -23.68430 -22.29197 -22.26313 -21.75687 -21.39284 -20.70235 -18.72251 -17.78429 -16.58563 -15.89128 -15.67318 -15.13204 -14.91843 -14.78494 -14.74764 -14.53452 -14.22277 -13.70284 -13.42278 -13.20320 -13.08238 -12.82596 -12.45208 -12.28918 -12.09537 -11.99364 -11.85605 -11.39419 -11.32272 -11.08177 -10.97177 -10.87011 -10.79559 -10.61654 -10.43727 -9.85055 -9.46334 -9.27098 -8.88897 -8.83241 -8.68201 -8.57238 -8.31894 -7.94465 -7.04156 -6.40942 -4.45150 1.70203 1.74903 2.24542 2.42301 3.02028 3.11244 3.13390 3.79704 3.92075 4.09520 4.24523 4.56475 4.74043 5.09646 5.18282 5.23415 5.28572 5.34395 5.39011 5.45021 5.57512 5.68922 5.69657 5.78572 5.85560 5.92162 6.04453 6.13374 6.16467 6.21403 6.30941 6.33059 6.39723 6.44445 6.54501 6.64526 6.73770 6.77430 6.80936 6.83077 7.03553 7.07633 7.21935 7.29729 7.36776 7.55797 7.97901 8.25890 8.88869 8.94030 9.39566 9.83337 10.50262 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011005 B = 0.005930 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.593269 B = 4720.261221 C = 5757.367010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.057 3.943 3 Si 0.911 3.089 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.356 4.356 8 H 0.100 0.900 9 N -0.382 5.382 10 C 0.532 3.468 11 O -0.520 6.520 12 C -0.111 4.111 13 C -0.045 4.045 14 C -0.066 4.066 15 C -0.113 4.113 16 C -0.124 4.124 17 C -0.131 4.131 18 C -0.118 4.118 19 C -0.106 4.106 20 C -0.163 4.163 21 C -0.141 4.141 22 C 0.399 3.601 23 C -0.158 4.158 24 C -0.074 4.074 25 C -0.240 4.240 26 C 0.113 3.887 27 N -0.496 5.496 28 H 0.273 0.727 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.131 0.869 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.260 -3.509 0.401 8.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.153 4.153 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.483 4.483 8 H 0.117 0.883 9 N -0.094 5.094 10 C 0.321 3.679 11 O -0.396 6.396 12 C -0.114 4.114 13 C -0.082 4.082 14 C -0.066 4.066 15 C -0.131 4.131 16 C -0.142 4.142 17 C -0.149 4.149 18 C -0.136 4.136 19 C -0.124 4.124 20 C -0.200 4.200 21 C -0.179 4.179 22 C 0.169 3.831 23 C -0.182 4.182 24 C -0.101 4.101 25 C -0.262 4.262 26 C -0.046 4.046 27 N -0.211 5.211 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.149 0.851 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.890 -4.532 1.168 8.329 hybrid contribution 0.063 1.730 -0.830 1.920 sum 6.954 -2.802 0.338 7.505 Atomic orbital electron populations 1.69948 1.06162 1.28560 1.42828 1.25548 0.95198 0.99977 0.94588 0.86160 0.79921 0.81616 0.78720 1.19983 1.20609 1.18811 1.19430 0.92384 0.82106 1.54425 0.88285 1.41073 1.36413 1.12558 1.19326 1.19768 0.81398 0.84138 0.82636 1.90649 1.48808 1.26809 1.73293 1.20892 0.94285 1.06657 0.89547 1.20267 0.91516 0.95336 1.01125 1.19877 0.97129 0.95990 0.93621 1.20956 0.99523 0.93226 0.99389 1.21021 1.00680 0.97614 0.94884 1.21020 1.01449 0.98425 0.93984 1.21073 0.99394 0.93661 0.99508 1.21120 0.98497 0.98234 0.94551 1.22991 1.03110 0.95388 0.98523 1.22869 1.02681 0.93204 0.99112 1.18752 0.88984 0.88909 0.86481 1.21394 1.01893 1.01395 0.93553 1.21135 0.94845 0.96627 0.97445 1.21619 1.03899 0.99080 1.01608 1.22267 0.95180 0.97508 0.89692 1.67528 1.05201 1.21929 1.26481 0.91627 0.88774 0.90847 0.86526 0.86659 0.86752 0.86596 0.86137 0.88685 0.89037 0.88799 0.88444 0.85123 0.86675 0.86891 0.84565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.45 11.75 55.49 0.65 -20.80 16 2 C 0.06 1.33 3.83 -17.49 -0.07 1.26 16 3 Si 0.91 18.01 29.57 -169.99 -5.03 12.99 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.36 -8.31 7.27 -14.90 -0.11 -8.42 16 8 H 0.10 2.16 5.16 -52.49 -0.27 1.89 16 9 N -0.38 -9.46 2.68 -60.71 -0.16 -9.62 16 10 C 0.53 12.89 6.27 -10.99 -0.07 12.82 16 11 O -0.52 -14.16 15.23 5.56 0.08 -14.08 16 12 C -0.11 -2.16 1.00 -155.67 -0.16 -2.32 16 13 C -0.05 -0.77 5.08 -27.88 -0.14 -0.91 16 14 C -0.07 -1.12 4.81 -104.62 -0.50 -1.63 16 15 C -0.11 -1.71 9.72 -39.58 -0.38 -2.10 16 16 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 17 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 18 C -0.12 -1.86 10.05 -39.59 -0.40 -2.25 16 19 C -0.11 -1.86 9.49 -39.59 -0.38 -2.24 16 20 C -0.16 -2.82 9.79 -26.70 -0.26 -3.08 16 21 C -0.14 -2.55 9.80 -26.70 -0.26 -2.81 16 22 C 0.40 10.14 6.31 -154.64 -0.98 9.16 16 23 C -0.16 -3.65 7.96 -39.22 -0.31 -3.96 16 24 C -0.07 -1.48 10.17 -39.32 -0.40 -1.88 16 25 C -0.24 -4.59 10.11 -39.40 -0.40 -4.98 16 26 C 0.11 2.42 11.18 -17.56 -0.20 2.22 16 27 N -0.50 -12.69 8.08 -12.34 -0.10 -12.79 16 28 H 0.27 6.64 8.32 -40.82 -0.34 6.30 16 29 H 0.09 1.66 5.29 -51.93 -0.27 1.38 16 30 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 31 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 36 H 0.09 1.80 8.08 -51.93 -0.42 1.38 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.10 2.00 8.14 -51.93 -0.42 1.58 16 40 H 0.13 3.01 6.26 -52.49 -0.33 2.68 16 41 H 0.12 1.91 8.06 -52.48 -0.42 1.49 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.14 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -30.40 361.61 -10.40 -40.81 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -5.50 Total: 13.56 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -5.80 Total: -15.51 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.39 Total: -43.21 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.08 Total: -14.08 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.40 -10.40 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892471921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.444 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds