Wall clock time and date at job start Tue Mar 31 2020 13:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86804 * 120.00038 * 2 1 4 4 H 1.48507 * 109.46906 * 274.98575 * 3 2 1 5 5 H 1.48496 * 109.47006 * 34.98173 * 3 2 1 6 6 H 1.48495 * 109.47218 * 154.98579 * 3 2 1 7 7 C 1.38897 * 120.00403 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99894 * 189.27458 * 7 2 1 9 9 N 1.37205 * 119.99627 * 9.26948 * 7 2 1 10 10 C 1.34778 * 120.00103 * 229.94002 * 9 7 2 11 11 O 1.21277 * 120.00149 * 184.18008 * 10 9 7 12 12 C 1.50699 * 120.00066 * 4.17933 * 10 9 7 13 13 C 1.52995 * 115.54800 * 289.90723 * 12 10 9 14 14 C 1.50703 * 109.47471 * 296.82228 * 13 12 10 15 15 C 1.38232 * 119.99753 * 274.79064 * 14 13 12 16 16 C 1.38236 * 119.99466 * 179.78495 * 15 14 13 17 17 C 1.38233 * 120.00415 * 0.43788 * 16 15 14 18 18 C 1.38239 * 119.99474 * 359.81777 * 17 16 15 19 19 C 1.38227 * 120.00514 * 359.97304 * 18 17 16 20 20 C 1.52996 * 117.49927 * 144.23786 * 12 10 9 21 21 C 1.52995 * 117.49844 * 75.57594 * 12 10 9 22 22 C 1.39429 * 120.00209 * 49.93672 * 9 7 2 23 23 C 1.39065 * 119.69452 * 14.50790 * 22 9 7 24 24 C 1.38375 * 119.10022 * 179.97438 * 23 22 9 25 25 C 1.38821 * 118.49343 * 359.97438 * 24 23 22 26 26 C 1.38145 * 119.31349 * 0.27719 * 25 24 23 27 27 N 1.31890 * 120.84689 * 359.40353 * 26 25 24 28 28 H 0.97005 * 120.00316 * 4.96498 * 1 2 3 29 29 H 1.09001 * 109.47413 * 56.82722 * 13 12 10 30 30 H 1.09002 * 109.47206 * 176.82124 * 13 12 10 31 31 H 1.08000 * 120.00261 * 359.97438 * 15 14 13 32 32 H 1.08002 * 119.99630 * 180.27427 * 16 15 14 33 33 H 1.07997 * 120.00312 * 179.82792 * 17 16 15 34 34 H 1.08004 * 119.99231 * 179.97438 * 18 17 16 35 35 H 1.07994 * 120.00364 * 180.02562 * 19 18 17 36 36 H 1.09003 * 117.50368 * 359.97438 * 20 12 10 37 37 H 1.09005 * 117.50007 * 145.02610 * 20 12 10 38 38 H 1.09007 * 117.50135 * 214.97845 * 21 12 10 39 39 H 1.08997 * 117.50284 * 359.97438 * 21 12 10 40 40 H 1.07998 * 120.45175 * 359.97246 * 23 22 9 41 41 H 1.08004 * 120.75590 * 180.02562 * 24 23 22 42 42 H 1.07998 * 120.34874 * 180.02562 * 25 24 23 43 43 H 1.08002 * 119.57702 * 179.70241 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3902 2.1073 -1.3949 5 1 1.5021 2.6200 0.8027 6 1 3.5943 1.4121 0.5920 7 6 2.0086 -1.2028 -0.0005 8 1 3.0780 -1.2089 0.1502 9 7 1.3360 -2.3832 -0.1925 10 6 1.5274 -3.4134 0.6552 11 8 0.9920 -4.4807 0.4431 12 6 2.4066 -3.2391 1.8666 13 6 3.9028 -3.0955 1.5808 14 6 4.4156 -4.3597 0.9405 15 6 4.8079 -5.4243 1.7301 16 6 5.2741 -6.5855 1.1426 17 6 5.3566 -6.6787 -0.2341 18 6 4.9692 -5.6120 -1.0235 19 6 4.4990 -4.4524 -0.4362 20 6 1.9990 -3.9713 3.1467 21 6 1.8343 -2.4527 3.0476 22 6 0.4545 -2.5170 -1.2644 23 6 0.4805 -1.5869 -2.2979 24 6 -0.3994 -1.7319 -3.3560 25 6 -1.2781 -2.8065 -3.3442 26 6 -1.2524 -3.6895 -2.2820 27 7 -0.3982 -3.5294 -1.2900 28 1 -0.4851 0.8369 -0.0727 29 1 4.0648 -2.2549 0.9061 30 1 4.4359 -2.9193 2.5151 31 1 4.7472 -5.3501 2.8058 32 1 5.5764 -7.4190 1.7594 33 1 5.7234 -7.5849 -0.6930 34 1 5.0341 -5.6848 -2.0991 35 1 4.1960 -3.6193 -1.0529 36 1 1.0946 -4.5789 3.1128 37 1 2.7968 -4.3503 3.7855 38 1 2.5238 -1.8333 3.6214 39 1 0.8220 -2.0610 2.9483 40 1 1.1779 -0.7627 -2.2751 41 1 -0.4020 -1.0254 -4.1729 42 1 -1.9773 -2.9486 -4.1549 43 1 -1.9374 -4.5243 -2.2661 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892471921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:32 Heat of formation + Delta-G solvation = 57.491886 kcal Electronic energy + Delta-G solvation = -27706.765447 eV Core-core repulsion = 24103.765719 eV Total energy + Delta-G solvation = -3602.999728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68527 -40.43883 -39.54250 -37.49228 -36.78274 -33.80646 -33.15015 -32.82042 -31.71949 -30.92931 -28.13312 -27.12554 -25.31942 -23.98509 -23.49269 -23.14966 -22.86832 -22.10872 -20.45461 -19.44633 -17.95990 -17.45248 -17.25008 -16.83712 -16.45530 -16.40006 -16.05241 -15.94309 -15.69942 -15.33625 -15.09022 -14.85279 -14.26241 -14.12038 -14.01204 -13.87246 -13.66363 -13.46358 -13.36285 -12.94672 -12.93653 -12.59064 -12.44922 -12.35787 -12.12848 -12.02042 -11.81430 -11.29497 -11.15749 -10.80637 -10.62911 -10.55713 -10.43743 -9.75440 -9.73028 -9.50681 -8.83271 -8.19540 -6.29813 0.50775 0.54671 0.57075 0.73449 1.43875 1.47691 1.58404 2.07339 2.26054 2.61537 2.91062 2.98415 3.05998 3.48530 3.76271 3.86430 3.93385 4.04092 4.15592 4.17325 4.18550 4.22920 4.30076 4.40409 4.53220 4.62824 4.65366 4.69188 4.77107 4.79258 4.87195 4.94083 5.04228 5.08362 5.12661 5.23011 5.25150 5.29785 5.40898 5.52025 5.55343 5.62422 5.65635 5.82421 5.90736 6.19384 6.22157 6.46244 7.07789 7.20532 7.59795 8.06018 8.72319 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011005 B = 0.005930 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.593269 B = 4720.261221 C = 5757.367010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.023 3.977 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.248 1.248 7 C -0.359 4.359 8 H 0.109 0.891 9 N -0.392 5.392 10 C 0.520 3.480 11 O -0.567 6.567 12 C -0.126 4.126 13 C -0.037 4.037 14 C -0.083 4.083 15 C -0.118 4.118 16 C -0.123 4.123 17 C -0.133 4.133 18 C -0.134 4.134 19 C -0.135 4.135 20 C -0.144 4.144 21 C -0.137 4.137 22 C 0.363 3.637 23 C -0.175 4.175 24 C -0.072 4.072 25 C -0.221 4.221 26 C 0.092 3.908 27 N -0.539 5.539 28 H 0.271 0.729 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.061 0.939 40 H 0.122 0.878 41 H 0.154 0.846 42 H 0.160 0.840 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.752 -3.773 0.689 9.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.171 1.171 7 C -0.485 4.485 8 H 0.127 0.873 9 N -0.104 5.104 10 C 0.310 3.690 11 O -0.446 6.446 12 C -0.129 4.129 13 C -0.074 4.074 14 C -0.083 4.083 15 C -0.136 4.136 16 C -0.141 4.141 17 C -0.150 4.150 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.181 4.181 21 C -0.174 4.174 22 C 0.134 3.866 23 C -0.199 4.199 24 C -0.098 4.098 25 C -0.243 4.243 26 C -0.066 4.066 27 N -0.255 5.255 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.160 0.840 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.143 0.857 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.080 0.920 40 H 0.140 0.860 41 H 0.172 0.828 42 H 0.178 0.822 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.398 -4.787 1.443 9.774 hybrid contribution -0.500 1.712 -1.044 2.066 sum 7.898 -3.075 0.399 8.485 Atomic orbital electron populations 1.70094 1.07895 1.29017 1.44652 1.26280 0.95586 1.02733 0.93745 0.85203 0.79236 0.77322 0.78660 1.19657 1.21220 1.17114 1.19755 0.92815 0.82067 1.53887 0.87350 1.41351 1.36388 1.13050 1.19616 1.20585 0.81384 0.83420 0.83573 1.90584 1.51008 1.28273 1.74703 1.20924 0.95090 1.08661 0.88225 1.20218 0.89813 0.94970 1.02355 1.19982 0.98018 0.96871 0.93462 1.21287 0.98858 0.92849 1.00600 1.21479 0.99299 0.98173 0.95168 1.21408 1.00478 0.98754 0.94390 1.21302 0.99657 0.93744 1.00451 1.21120 1.00452 0.98538 0.95227 1.23061 1.03230 0.94466 0.97388 1.22864 1.01449 0.94310 0.98785 1.19149 0.89877 0.89905 0.87651 1.21453 1.03036 1.00996 0.94442 1.21624 0.93521 0.97353 0.97282 1.22061 1.03376 0.97287 1.01569 1.22875 0.94996 0.98973 0.89774 1.67482 1.06517 1.22851 1.28671 0.91979 0.90383 0.87388 0.83974 0.83263 0.83834 0.85689 0.88720 0.91051 0.84824 0.85342 0.92041 0.86031 0.82842 0.82232 0.82088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.51 11.75 21.65 0.25 -46.26 16 2 C 0.02 1.08 3.83 84.91 0.33 1.40 16 3 Si 0.97 37.15 29.57 68.60 2.03 39.18 16 4 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.29 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 7 C -0.36 -17.32 7.27 84.01 0.61 -16.71 16 8 H 0.11 4.89 5.16 -2.91 -0.02 4.87 16 9 N -0.39 -20.44 2.68 -464.37 -1.24 -21.68 16 10 C 0.52 26.44 6.27 87.66 0.55 26.99 16 11 O -0.57 -32.65 15.23 -3.02 -0.05 -32.70 16 12 C -0.13 -4.97 1.00 -52.93 -0.05 -5.02 16 13 C -0.04 -1.21 5.08 29.85 0.15 -1.06 16 14 C -0.08 -2.80 4.81 -19.86 -0.10 -2.90 16 15 C -0.12 -3.31 9.72 22.27 0.22 -3.09 16 16 C -0.12 -3.12 10.05 22.27 0.22 -2.89 16 17 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 18 C -0.13 -4.23 10.05 22.27 0.22 -4.00 16 19 C -0.14 -4.94 9.49 22.27 0.21 -4.73 16 20 C -0.14 -4.87 9.79 30.62 0.30 -4.57 16 21 C -0.14 -4.91 9.80 30.62 0.30 -4.61 16 22 C 0.36 19.33 6.31 132.90 0.84 20.16 16 23 C -0.18 -8.30 7.96 22.50 0.18 -8.12 16 24 C -0.07 -2.79 10.17 22.44 0.23 -2.56 16 25 C -0.22 -8.07 10.11 22.39 0.23 -7.84 16 26 C 0.09 3.97 11.18 84.66 0.95 4.91 16 27 N -0.54 -28.76 8.08 -192.95 -1.56 -30.32 16 28 H 0.27 13.60 8.32 -92.70 -0.77 12.82 16 29 H 0.08 2.80 5.29 -2.39 -0.01 2.78 16 30 H 0.11 2.76 8.08 -2.39 -0.02 2.74 16 31 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 32 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 33 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 35 H 0.09 3.80 8.06 -2.91 -0.02 3.78 16 36 H 0.07 2.75 8.08 -2.39 -0.02 2.73 16 37 H 0.13 3.34 8.14 -2.38 -0.02 3.32 16 38 H 0.13 3.65 8.14 -2.38 -0.02 3.63 16 39 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.12 5.82 6.26 -2.91 -0.02 5.80 16 41 H 0.15 4.66 8.06 -2.91 -0.02 4.64 16 42 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.16 5.83 8.06 -2.91 -0.02 5.81 16 Total: -1.00 -71.68 361.61 6.06 -65.62 By element: Atomic # 1 Polarization: 43.09 SS G_CDS: 1.02 Total: 44.11 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 5.61 Total: -17.94 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -2.55 Total: -98.26 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -0.05 Total: -32.70 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Total: -71.68 6.06 -65.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892471921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.109 kcal (2) G-P(sol) polarization free energy of solvation -71.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds