Wall clock time and date at job start Tue Mar 31 2020 13:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 120.00418 * 2 1 4 4 H 1.48501 * 109.47099 * 0.02562 * 3 2 1 5 5 H 1.48510 * 109.47270 * 119.99937 * 3 2 1 6 6 H 1.48495 * 109.47547 * 239.99961 * 3 2 1 7 7 C 1.38901 * 119.99557 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99792 * 192.06457 * 7 2 1 9 9 N 1.37203 * 120.00343 * 12.06123 * 7 2 1 10 10 C 1.34773 * 120.00125 * 228.66337 * 9 7 2 11 11 O 1.21276 * 119.99673 * 174.84542 * 10 9 7 12 12 C 1.50697 * 120.00412 * 354.84937 * 10 9 7 13 13 H 1.08997 * 109.67444 * 330.37214 * 12 10 9 14 14 C 1.53324 * 109.68450 * 209.84935 * 12 10 9 15 15 C 1.52731 * 108.39524 * 170.41048 * 14 12 10 16 16 C 1.50634 * 110.59822 * 51.05197 * 15 14 12 17 17 C 1.38914 * 117.75039 * 162.32635 * 16 15 14 18 18 C 1.37932 * 120.54203 * 179.74440 * 17 16 15 19 19 C 1.38265 * 119.77498 * 359.97349 * 18 17 16 20 20 C 1.37934 * 119.76800 * 0.12918 * 19 18 17 21 21 C 1.37651 * 122.56489 * 342.27856 * 16 15 14 22 22 C 1.50629 * 122.56894 * 0.72171 * 21 16 15 23 23 C 1.39433 * 119.99793 * 48.66437 * 9 7 2 24 24 C 1.39065 * 119.69654 * 12.47126 * 23 9 7 25 25 C 1.38382 * 119.09837 * 179.79321 * 24 23 9 26 26 C 1.38827 * 118.48988 * 0.47600 * 25 24 23 27 27 C 1.38146 * 119.31351 * 359.74730 * 26 25 24 28 28 N 1.31877 * 120.85045 * 0.02562 * 27 26 25 29 29 H 0.97004 * 119.99549 * 354.92463 * 1 2 3 30 30 H 1.08990 * 109.68167 * 290.13610 * 14 12 10 31 31 H 1.08998 * 109.67748 * 50.65085 * 14 12 10 32 32 H 1.08996 * 109.24969 * 171.34027 * 15 14 12 33 33 H 1.09000 * 109.25342 * 290.76575 * 15 14 12 34 34 H 1.07997 * 119.73177 * 359.71002 * 17 16 15 35 35 H 1.08001 * 120.11535 * 179.97438 * 18 17 16 36 36 H 1.08000 * 120.11808 * 180.14578 * 19 18 17 37 37 H 1.07999 * 119.73099 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.26592 * 221.88371 * 22 21 16 39 39 H 1.08998 * 109.24722 * 102.44404 * 22 21 16 40 40 H 1.07996 * 120.44867 * 0.02562 * 24 23 9 41 41 H 1.08001 * 120.75521 * 180.20159 * 25 24 23 42 42 H 1.08000 * 120.34499 * 179.72614 * 26 25 24 43 43 H 1.07998 * 119.57273 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 1.2833 2.7464 0.0006 5 1 3.1020 1.6963 1.2126 6 1 3.1020 1.6963 -1.2124 7 6 2.0085 -1.2030 -0.0005 8 1 3.0707 -1.2134 0.1950 9 7 1.3452 -2.3780 -0.2493 10 6 1.5210 -3.4367 0.5658 11 8 0.8654 -4.4437 0.4017 12 6 2.5322 -3.3694 1.6811 13 1 3.3462 -2.7018 1.3986 14 6 3.0871 -4.7711 1.9605 15 6 4.2705 -4.6392 2.9170 16 6 3.8916 -3.8127 4.1180 17 6 4.6996 -3.9004 5.2446 18 6 4.4091 -3.1648 6.3746 19 6 3.3050 -2.3325 6.3870 20 6 2.5003 -2.2457 5.2701 21 6 2.7897 -2.9879 4.1320 22 6 1.8616 -2.8545 2.9532 23 6 0.4892 -2.4766 -1.3455 24 6 0.5056 -1.4882 -2.3236 25 6 -0.3461 -1.6007 -3.4085 26 6 -1.1952 -2.6971 -3.4728 27 6 -1.1615 -3.6389 -2.4627 28 7 -0.3357 -3.5075 -1.4429 29 1 -0.4850 0.8368 0.0743 30 1 2.3132 -5.3880 2.4170 31 1 3.4177 -5.2277 1.0276 32 1 4.5787 -5.6314 3.2463 33 1 5.1004 -4.1595 2.3981 34 1 5.5621 -4.5504 5.2358 35 1 5.0418 -3.2386 7.2467 36 1 3.0737 -1.7522 7.2680 37 1 1.6383 -1.5951 5.2803 38 1 1.5968 -1.8055 2.8207 39 1 0.9565 -3.4321 3.1413 40 1 1.1766 -0.6461 -2.2395 41 1 -0.3533 -0.8503 -4.1851 42 1 -1.8753 -2.8125 -4.3038 43 1 -1.8199 -4.4937 -2.5087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892473360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:00 Heat of formation + Delta-G solvation = 17.767525 kcal Electronic energy + Delta-G solvation = -27110.942974 eV Core-core repulsion = 23506.220669 eV Total energy + Delta-G solvation = -3604.722305 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.75226 -40.80822 -39.57609 -36.99377 -36.50742 -33.87932 -33.49434 -32.83209 -31.54681 -30.67408 -29.65154 -27.16201 -25.60769 -24.45570 -23.90748 -23.20233 -22.99144 -21.20331 -20.44322 -19.33594 -18.18677 -17.41198 -17.24866 -16.83912 -16.54870 -16.34245 -16.23055 -15.62533 -15.50322 -15.29472 -15.12551 -14.68208 -14.58287 -14.32281 -14.05732 -13.79322 -13.69395 -13.46899 -13.41965 -13.06938 -12.96229 -12.89402 -12.42483 -12.36679 -12.26719 -12.16612 -11.80856 -11.66466 -11.34503 -11.16135 -10.70245 -10.65467 -10.45458 -9.68915 -9.60041 -9.40261 -8.82693 -8.29972 -6.33792 0.50132 0.52584 0.52875 0.73311 1.41668 1.45027 1.53402 2.00577 2.24343 2.65872 2.89253 2.90669 3.42503 3.68053 3.76496 3.85274 4.03140 4.10664 4.16618 4.19350 4.26209 4.30856 4.44134 4.46825 4.53763 4.57764 4.62599 4.69537 4.75463 4.79152 4.93485 4.99515 5.02646 5.10768 5.12473 5.19750 5.29018 5.37287 5.38243 5.42411 5.55258 5.65377 5.66915 5.83831 5.89223 6.14312 6.19552 6.39786 6.99888 7.16427 7.53242 7.99407 8.65707 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014369 B = 0.004559 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.184840 B = 6140.005937 C = 7442.561573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.024 3.976 3 Si 0.977 3.023 4 H -0.283 1.283 5 H -0.260 1.260 6 H -0.257 1.257 7 C -0.374 4.374 8 H 0.105 0.895 9 N -0.400 5.400 10 C 0.482 3.518 11 O -0.560 6.560 12 C -0.077 4.077 13 H 0.096 0.904 14 C -0.095 4.095 15 C -0.070 4.070 16 C -0.088 4.088 17 C -0.121 4.121 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.136 4.136 21 C -0.084 4.084 22 C -0.050 4.050 23 C 0.358 3.642 24 C -0.174 4.174 25 C -0.073 4.073 26 C -0.220 4.220 27 C 0.092 3.908 28 N -0.536 5.536 29 H 0.274 0.726 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.142 0.858 37 H 0.115 0.885 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.122 0.878 41 H 0.155 0.845 42 H 0.161 0.839 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.298 -1.649 5.405 10.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.183 4.183 3 Si 0.799 3.201 4 H -0.208 1.208 5 H -0.185 1.185 6 H -0.182 1.182 7 C -0.500 4.500 8 H 0.123 0.877 9 N -0.112 5.112 10 C 0.273 3.727 11 O -0.439 6.439 12 C -0.098 4.098 13 H 0.115 0.885 14 C -0.133 4.133 15 C -0.107 4.107 16 C -0.088 4.088 17 C -0.139 4.139 18 C -0.142 4.142 19 C -0.144 4.144 20 C -0.154 4.154 21 C -0.085 4.085 22 C -0.087 4.087 23 C 0.128 3.872 24 C -0.198 4.198 25 C -0.098 4.098 26 C -0.241 4.241 27 C -0.066 4.066 28 N -0.253 5.253 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.160 0.840 37 H 0.133 0.867 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.140 0.860 41 H 0.172 0.828 42 H 0.179 0.821 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.871 -2.669 6.026 10.266 hybrid contribution -0.498 1.726 -0.732 1.940 sum 7.373 -0.942 5.293 9.126 Atomic orbital electron populations 1.70069 1.07947 1.29229 1.44078 1.26287 0.95690 1.02833 0.93454 0.85229 0.78204 0.76515 0.80115 1.20833 1.18451 1.18168 1.19583 0.93852 0.82502 1.54108 0.87726 1.41500 1.37914 1.12267 1.19469 1.21657 0.84715 0.83130 0.83201 1.90594 1.48505 1.33034 1.71740 1.21012 0.96845 0.99567 0.92373 0.88550 1.21353 0.98071 0.94146 0.99723 1.20489 0.97207 1.00317 0.92692 1.19842 0.94789 0.97311 0.96821 1.21432 0.99818 1.00332 0.92324 1.21417 0.97499 0.96358 0.98944 1.21324 0.95440 0.99590 0.98074 1.21305 1.00645 0.99882 0.93615 1.19596 0.96189 0.97810 0.94860 1.20039 0.96559 1.00968 0.91181 1.19128 0.90242 0.90247 0.87544 1.21472 1.03266 1.00169 0.94867 1.21643 0.93668 0.97812 0.96723 1.22092 1.03489 0.96427 1.02138 1.22924 0.95088 0.99125 0.89503 1.67553 1.07177 1.24263 1.26282 0.91649 0.92610 0.91779 0.88111 0.89269 0.83464 0.83150 0.83990 0.86653 0.91713 0.93157 0.86037 0.82754 0.82098 0.81816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.91 11.74 21.65 0.25 -46.66 16 2 C 0.02 1.17 3.61 84.91 0.31 1.47 16 3 Si 0.98 37.83 29.57 68.60 2.03 39.86 16 4 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 5 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 6 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.37 -18.60 7.60 84.01 0.64 -17.97 16 8 H 0.11 4.86 6.73 -2.91 -0.02 4.84 16 9 N -0.40 -21.24 2.68 -464.37 -1.24 -22.49 16 10 C 0.48 24.77 6.63 87.66 0.58 25.36 16 11 O -0.56 -31.75 14.69 -3.02 -0.04 -31.80 16 12 C -0.08 -3.14 1.91 -11.52 -0.02 -3.17 16 13 H 0.10 3.85 6.44 -2.39 -0.02 3.83 16 14 C -0.09 -3.26 4.74 30.61 0.15 -3.12 16 15 C -0.07 -1.81 5.67 29.74 0.17 -1.65 16 16 C -0.09 -2.46 5.74 -19.86 -0.11 -2.57 16 17 C -0.12 -2.68 9.61 22.36 0.21 -2.47 16 18 C -0.12 -2.55 10.05 22.20 0.22 -2.33 16 19 C -0.13 -2.95 10.05 22.20 0.22 -2.73 16 20 C -0.14 -4.04 9.61 22.36 0.21 -3.83 16 21 C -0.08 -2.79 5.74 -19.86 -0.11 -2.90 16 22 C -0.05 -1.99 4.97 29.74 0.15 -1.85 16 23 C 0.36 19.08 6.42 132.90 0.85 19.94 16 24 C -0.17 -8.25 7.89 22.50 0.18 -8.08 16 25 C -0.07 -2.80 10.17 22.44 0.23 -2.57 16 26 C -0.22 -7.90 10.11 22.39 0.23 -7.68 16 27 C 0.09 3.90 11.18 84.66 0.95 4.84 16 28 N -0.54 -28.43 7.97 -192.95 -1.54 -29.96 16 29 H 0.27 13.88 8.32 -92.71 -0.77 13.11 16 30 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 31 H 0.06 2.21 8.12 -2.39 -0.02 2.19 16 32 H 0.10 2.05 8.12 -2.39 -0.02 2.03 16 33 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.15 2.34 8.05 -2.91 -0.02 2.31 16 35 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.12 3.38 8.05 -2.91 -0.02 3.35 16 38 H 0.06 2.84 8.13 -2.39 -0.02 2.83 16 39 H 0.05 2.18 8.11 -2.39 -0.02 2.16 16 40 H 0.12 5.85 6.06 -2.91 -0.02 5.83 16 41 H 0.15 4.64 8.06 -2.91 -0.02 4.62 16 42 H 0.16 4.22 8.06 -2.91 -0.02 4.20 16 43 H 0.16 5.77 8.06 -2.91 -0.02 5.75 16 Total: -1.00 -70.19 352.32 5.52 -64.67 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: 1.02 Total: 37.65 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 5.05 Total: -11.27 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -2.53 Total: -99.11 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.04 Total: -31.80 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Total: -70.19 5.52 -64.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892473360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.435 kcal (2) G-P(sol) polarization free energy of solvation -70.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds