Wall clock time and date at job start Tue Mar 31 2020 13:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47346 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47368 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99746 * 179.97438 * 12 11 10 14 14 O 1.21581 * 120.00299 * 0.02562 * 13 12 11 15 15 N 1.34784 * 119.99541 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99763 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.43523 * 325.09513 * 16 15 13 18 18 C 1.53064 * 109.43315 * 205.22592 * 16 15 13 19 19 C 1.53414 * 108.30572 * 191.74487 * 18 16 15 20 20 O 1.42826 * 108.36454 * 64.69001 * 19 18 16 21 21 C 1.35900 * 117.84991 * 310.79782 * 20 19 18 22 22 C 1.39335 * 118.48753 * 197.01464 * 21 20 19 23 23 F 1.35100 * 119.91908 * 0.45259 * 22 21 20 24 24 C 1.38139 * 120.17487 * 180.43186 * 22 21 20 25 25 C 1.38303 * 119.92399 * 359.97438 * 24 22 21 26 26 C 1.38075 * 120.00313 * 359.91808 * 25 24 22 27 27 C 1.38277 * 121.81472 * 17.29174 * 21 20 19 28 28 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 30 30 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 31 31 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 32 32 H 1.08996 * 109.47407 * 59.99213 * 10 9 7 33 33 H 1.09000 * 109.46870 * 299.99817 * 11 10 9 34 34 H 1.09004 * 109.47108 * 59.99711 * 11 10 9 35 35 H 0.97003 * 119.99531 * 0.02562 * 12 11 10 36 36 H 0.97003 * 119.99737 * 0.02562 * 15 13 12 37 37 H 1.09003 * 109.70106 * 311.44696 * 18 16 15 38 38 H 1.08998 * 109.69936 * 72.04360 * 18 16 15 39 39 H 1.08995 * 109.67827 * 304.97280 * 19 18 16 40 40 H 1.08998 * 109.71696 * 184.42944 * 19 18 16 41 41 H 1.07997 * 120.04347 * 179.97438 * 24 22 21 42 42 H 1.08002 * 119.99998 * 179.91691 * 25 24 22 43 43 H 1.08005 * 119.82100 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 7 2.4323 -6.1006 -0.0024 13 6 1.9830 -7.3713 -0.0024 14 8 0.7876 -7.5935 -0.0025 15 7 2.8588 -8.3958 -0.0032 16 6 2.3705 -9.7769 -0.0038 17 1 1.4550 -9.8382 0.5847 18 6 3.4321 -10.6927 0.6105 19 6 3.0323 -12.1476 0.3332 20 8 3.0726 -12.3641 -1.0780 21 6 2.4416 -11.4637 -1.8768 22 6 2.1563 -11.8268 -3.1914 23 9 2.4985 -13.0539 -3.6409 24 6 1.5239 -10.9354 -4.0362 25 6 1.1726 -9.6793 -3.5761 26 6 1.4524 -9.3181 -2.2731 27 6 2.0859 -10.2078 -1.4203 28 1 -0.4850 -0.8401 -0.0004 29 1 0.6241 -2.5574 0.8881 30 1 0.6247 -2.5564 -0.8919 31 1 2.8726 -3.6039 -0.8910 32 1 2.8713 -3.6047 0.8889 33 1 0.8533 -5.0450 0.8877 34 1 0.8540 -5.0447 -0.8923 35 1 3.3860 -5.9233 -0.0019 36 1 3.8125 -8.2184 -0.0035 37 1 4.4021 -10.4857 0.1584 38 1 3.4842 -10.5247 1.6862 39 1 2.0232 -12.3280 0.7037 40 1 3.7312 -12.8218 0.8282 41 1 1.3042 -11.2188 -5.0549 42 1 0.6794 -8.9809 -4.2360 43 1 1.1763 -8.3367 -1.9168 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892793496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:53 Heat of formation + Delta-G solvation = -101.832541 kcal Electronic energy + Delta-G solvation = -26481.971494 eV Core-core repulsion = 22441.293716 eV Total energy + Delta-G solvation = -4040.677778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.99503 -41.31386 -39.79501 -37.81659 -36.25832 -35.26232 -33.68229 -32.33122 -31.19256 -30.65420 -30.11204 -26.66167 -25.36681 -24.31126 -23.06414 -22.52741 -21.06010 -20.77459 -20.77096 -18.51197 -18.24248 -17.54248 -17.14503 -16.89365 -16.45914 -15.98290 -15.95653 -15.24179 -15.13500 -14.90777 -14.62769 -14.52546 -14.20900 -13.85398 -13.75067 -13.37237 -13.25100 -12.96450 -12.76063 -12.43526 -12.05006 -11.81889 -11.65763 -11.59769 -11.29240 -11.17979 -10.92232 -10.81858 -10.36885 -10.15609 -10.05201 -9.85435 -9.48267 -9.03093 -8.82220 -8.60843 -8.49959 -8.36395 -6.39495 -4.09535 0.80598 0.95645 2.53378 2.77600 3.10411 3.32704 3.41416 3.43171 3.62173 3.86212 4.03129 4.15076 4.26995 4.33517 4.51997 4.58444 4.64014 4.84684 4.94779 5.00498 5.05604 5.15177 5.36107 5.37603 5.43472 5.54302 5.59637 5.64177 5.83830 5.99688 6.01590 6.11955 6.28272 6.32709 6.38070 6.43596 6.61545 6.81025 6.87265 6.96446 7.32326 7.44773 7.94022 8.15032 8.41688 8.52844 8.84292 9.63014 11.01259 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024884 B = 0.002151 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.964063 B =13016.834767 C =13655.711285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.604 4.604 8 H 0.048 0.952 9 C 0.011 3.989 10 C -0.113 4.113 11 C 0.134 3.866 12 N -0.739 5.739 13 C 0.701 3.299 14 O -0.587 6.587 15 N -0.742 5.742 16 C 0.211 3.789 17 H 0.106 0.894 18 C -0.168 4.168 19 C 0.066 3.934 20 O -0.310 6.310 21 C 0.106 3.894 22 C 0.062 3.938 23 F -0.135 7.135 24 C -0.119 4.119 25 C -0.126 4.126 26 C -0.074 4.074 27 C -0.152 4.152 28 H 0.269 0.731 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.395 0.605 36 H 0.398 0.602 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.141 0.859 42 H 0.135 0.865 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.290 -26.172 -1.838 27.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.897 3.103 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.642 4.642 8 H 0.067 0.933 9 C -0.027 4.027 10 C -0.152 4.152 11 C 0.011 3.989 12 N -0.393 5.393 13 C 0.401 3.599 14 O -0.466 6.466 15 N -0.397 5.397 16 C 0.105 3.895 17 H 0.124 0.876 18 C -0.206 4.206 19 C -0.009 4.009 20 O -0.224 6.224 21 C 0.059 3.941 22 C 0.042 3.958 23 F -0.113 7.113 24 C -0.137 4.137 25 C -0.144 4.144 26 C -0.092 4.092 27 C -0.155 4.155 28 H 0.080 0.920 29 H 0.028 0.972 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.229 0.771 36 H 0.232 0.768 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.134 0.866 41 H 0.159 0.841 42 H 0.153 0.847 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.080 -24.899 -1.881 25.954 hybrid contribution 1.134 -1.555 0.018 1.925 sum 8.214 -26.454 -1.862 27.762 Atomic orbital electron populations 1.70781 1.06891 1.30703 1.46356 1.25867 0.96562 1.02785 0.93758 0.83540 0.74891 0.75355 0.76474 1.20733 1.21461 1.21446 1.22008 0.94221 0.91927 1.56093 0.93317 1.19151 0.94489 0.92617 0.96397 1.21754 0.99518 0.92771 1.01117 1.21537 0.91295 0.84181 1.01895 1.45389 1.10612 1.04339 1.78945 1.16009 0.85369 0.80796 0.77739 1.90937 1.13912 1.83991 1.57746 1.45134 1.09177 1.04294 1.81127 1.19419 0.98326 0.80253 0.91511 0.87604 1.22531 0.99649 0.95155 1.03226 1.23005 1.03074 0.96186 0.78683 1.86053 1.70600 1.47488 1.18227 1.18623 0.96313 0.89249 0.89909 1.17098 1.04859 0.82391 0.91421 1.91486 1.90608 1.40097 1.89159 1.21039 0.99104 0.93673 0.99929 1.20994 1.01357 0.95890 0.96204 1.21449 0.94511 1.00504 0.92714 1.20155 1.04229 0.92915 0.98191 0.92006 0.97162 0.97142 0.92550 0.92573 0.91886 0.91904 0.77125 0.76781 0.89578 0.88540 0.91085 0.86573 0.84129 0.84688 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.79 13.65 55.43 0.76 -27.04 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 3 Si 1.07 24.92 29.90 -169.99 -5.08 19.84 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.60 -16.85 9.11 -34.44 -0.31 -17.17 16 8 H 0.05 1.32 7.74 -52.49 -0.41 0.92 16 9 C 0.01 0.27 4.28 -27.88 -0.12 0.15 16 10 C -0.11 -2.15 5.27 -26.73 -0.14 -2.29 16 11 C 0.13 2.23 5.67 -4.04 -0.02 2.21 16 12 N -0.74 -9.68 5.56 -65.22 -0.36 -10.05 16 13 C 0.70 9.42 7.12 -86.91 -0.62 8.81 16 14 O -0.59 -10.13 14.27 5.29 0.08 -10.06 16 15 N -0.74 -7.08 4.86 -59.75 -0.29 -7.37 16 16 C 0.21 1.96 2.70 -69.02 -0.19 1.78 16 17 H 0.11 1.13 7.57 -51.93 -0.39 0.74 16 18 C -0.17 -1.00 5.67 -26.48 -0.15 -1.15 16 19 C 0.07 0.41 7.03 37.37 0.26 0.68 16 20 O -0.31 -3.16 10.09 -19.43 -0.20 -3.35 16 21 C 0.11 1.18 6.48 -39.16 -0.25 0.93 16 22 C 0.06 0.72 7.30 -39.21 -0.29 0.43 16 23 F -0.13 -1.65 17.05 2.25 0.04 -1.61 16 24 C -0.12 -1.18 10.02 -39.59 -0.40 -1.58 16 25 C -0.13 -1.32 10.04 -39.62 -0.40 -1.72 16 26 C -0.07 -0.88 9.08 -39.52 -0.36 -1.24 16 27 C -0.15 -1.68 5.56 -104.45 -0.58 -2.26 16 28 H 0.27 8.18 7.22 -40.82 -0.29 7.88 16 29 H 0.01 0.26 8.01 -51.93 -0.42 -0.15 16 30 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.40 4.10 8.49 -40.82 -0.35 3.75 16 36 H 0.40 2.72 8.59 -40.82 -0.35 2.37 16 37 H 0.09 0.49 8.11 -51.93 -0.42 0.07 16 38 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 43 H 0.14 2.00 4.70 -52.48 -0.25 1.76 16 LS Contribution 359.05 15.07 5.41 5.41 Total: -1.00 -34.12 359.05 -9.20 -43.33 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.89 Total: 3.01 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -3.66 Total: -12.11 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.10 Total: -44.45 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.12 Total: -13.41 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.12 -9.20 -43.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892793496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.506 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds