Wall clock time and date at job start Tue Mar 31 2020 13:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47346 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47368 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99746 * 179.97438 * 12 11 10 14 14 O 1.21581 * 120.00299 * 0.02562 * 13 12 11 15 15 N 1.34784 * 119.99541 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99763 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.43523 * 325.09513 * 16 15 13 18 18 C 1.53064 * 109.43315 * 205.22592 * 16 15 13 19 19 C 1.53414 * 108.30572 * 191.74487 * 18 16 15 20 20 O 1.42826 * 108.36454 * 64.69001 * 19 18 16 21 21 C 1.35900 * 117.84991 * 310.79782 * 20 19 18 22 22 C 1.39335 * 118.48753 * 197.01464 * 21 20 19 23 23 F 1.35100 * 119.91908 * 0.45259 * 22 21 20 24 24 C 1.38139 * 120.17487 * 180.43186 * 22 21 20 25 25 C 1.38303 * 119.92399 * 359.97438 * 24 22 21 26 26 C 1.38075 * 120.00313 * 359.91808 * 25 24 22 27 27 C 1.38277 * 121.81472 * 17.29174 * 21 20 19 28 28 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 30 30 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 31 31 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 32 32 H 1.08996 * 109.47407 * 59.99213 * 10 9 7 33 33 H 1.09000 * 109.46870 * 299.99817 * 11 10 9 34 34 H 1.09004 * 109.47108 * 59.99711 * 11 10 9 35 35 H 0.97003 * 119.99531 * 0.02562 * 12 11 10 36 36 H 0.97003 * 119.99737 * 0.02562 * 15 13 12 37 37 H 1.09003 * 109.70106 * 311.44696 * 18 16 15 38 38 H 1.08998 * 109.69936 * 72.04360 * 18 16 15 39 39 H 1.08995 * 109.67827 * 304.97280 * 19 18 16 40 40 H 1.08998 * 109.71696 * 184.42944 * 19 18 16 41 41 H 1.07997 * 120.04347 * 179.97438 * 24 22 21 42 42 H 1.08002 * 119.99998 * 179.91691 * 25 24 22 43 43 H 1.08005 * 119.82100 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 7 2.4323 -6.1006 -0.0024 13 6 1.9830 -7.3713 -0.0024 14 8 0.7876 -7.5935 -0.0025 15 7 2.8588 -8.3958 -0.0032 16 6 2.3705 -9.7769 -0.0038 17 1 1.4550 -9.8382 0.5847 18 6 3.4321 -10.6927 0.6105 19 6 3.0323 -12.1476 0.3332 20 8 3.0726 -12.3641 -1.0780 21 6 2.4416 -11.4637 -1.8768 22 6 2.1563 -11.8268 -3.1914 23 9 2.4985 -13.0539 -3.6409 24 6 1.5239 -10.9354 -4.0362 25 6 1.1726 -9.6793 -3.5761 26 6 1.4524 -9.3181 -2.2731 27 6 2.0859 -10.2078 -1.4203 28 1 -0.4850 -0.8401 -0.0004 29 1 0.6241 -2.5574 0.8881 30 1 0.6247 -2.5564 -0.8919 31 1 2.8726 -3.6039 -0.8910 32 1 2.8713 -3.6047 0.8889 33 1 0.8533 -5.0450 0.8877 34 1 0.8540 -5.0447 -0.8923 35 1 3.3860 -5.9233 -0.0019 36 1 3.8125 -8.2184 -0.0035 37 1 4.4021 -10.4857 0.1584 38 1 3.4842 -10.5247 1.6862 39 1 2.0232 -12.3280 0.7037 40 1 3.7312 -12.8218 0.8282 41 1 1.3042 -11.2188 -5.0549 42 1 0.6794 -8.9809 -4.2360 43 1 1.1763 -8.3367 -1.9168 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892793496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:52 Heat of formation + Delta-G solvation = -124.976434 kcal Electronic energy + Delta-G solvation = -26482.975088 eV Core-core repulsion = 22441.293716 eV Total energy + Delta-G solvation = -4041.681373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.88770 -42.12375 -40.80769 -38.58571 -37.43931 -36.49110 -35.44743 -33.48111 -32.30463 -31.71671 -30.93068 -28.25201 -26.36215 -25.04730 -24.79806 -23.46227 -22.52830 -22.02997 -21.47401 -19.51689 -19.09516 -18.90798 -18.34041 -17.90769 -17.47191 -17.02859 -16.88250 -16.27179 -16.00824 -15.68252 -15.65405 -15.63478 -15.56441 -15.38579 -14.96451 -14.84952 -14.16908 -13.95397 -13.68186 -13.59429 -13.43754 -13.13048 -12.69447 -12.57435 -12.56548 -12.33669 -12.05429 -11.88672 -11.87486 -11.84611 -11.77414 -11.38673 -10.69071 -10.53385 -10.49535 -9.95730 -9.84914 -9.31469 -8.67545 -6.38737 -0.02558 0.11618 1.54099 1.56806 1.63042 1.81928 2.03152 2.10592 2.48079 2.58909 3.02340 3.17424 3.24268 3.44058 3.56706 3.67114 3.92510 4.02581 4.05410 4.13212 4.14288 4.23052 4.33711 4.42700 4.44222 4.58619 4.76011 4.81394 4.84182 4.85467 4.92420 4.97593 5.00319 5.17546 5.28495 5.35383 5.43915 5.44972 5.49314 5.59813 5.90727 5.99811 6.20007 6.22768 6.57863 7.01497 7.44071 7.48720 8.73427 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024884 B = 0.002151 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.964063 B =13016.834767 C =13655.711285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.043 4.043 3 Si 1.119 2.881 4 H -0.287 1.287 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.617 4.617 8 H 0.057 0.943 9 C 0.008 3.992 10 C -0.095 4.095 11 C 0.151 3.849 12 N -0.729 5.729 13 C 0.701 3.299 14 O -0.627 6.627 15 N -0.722 5.722 16 C 0.208 3.792 17 H 0.090 0.910 18 C -0.156 4.156 19 C 0.058 3.942 20 O -0.323 6.323 21 C 0.104 3.896 22 C 0.042 3.958 23 F -0.142 7.142 24 C -0.112 4.112 25 C -0.130 4.130 26 C -0.091 4.091 27 C -0.157 4.157 28 H 0.255 0.745 29 H -0.011 1.011 30 H -0.010 1.010 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.412 0.588 36 H 0.415 0.585 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.148 0.852 41 H 0.165 0.835 42 H 0.150 0.850 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.856 -26.985 -1.532 29.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.240 4.240 3 Si 0.940 3.060 4 H -0.213 1.213 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.655 4.655 8 H 0.076 0.924 9 C -0.030 4.030 10 C -0.133 4.133 11 C 0.026 3.974 12 N -0.384 5.384 13 C 0.401 3.599 14 O -0.509 6.509 15 N -0.377 5.377 16 C 0.103 3.897 17 H 0.108 0.892 18 C -0.194 4.194 19 C -0.016 4.016 20 O -0.238 6.238 21 C 0.057 3.943 22 C 0.023 3.977 23 F -0.120 7.120 24 C -0.130 4.130 25 C -0.148 4.148 26 C -0.109 4.109 27 C -0.160 4.160 28 H 0.064 0.936 29 H 0.008 0.992 30 H 0.008 0.992 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.248 0.752 36 H 0.252 0.748 37 H 0.114 0.886 38 H 0.138 0.862 39 H 0.093 0.907 40 H 0.165 0.835 41 H 0.182 0.818 42 H 0.167 0.833 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.719 -25.763 -1.567 27.580 hybrid contribution 0.313 -1.394 -0.072 1.430 sum 10.032 -27.157 -1.639 28.997 Atomic orbital electron populations 1.70919 1.08122 1.29903 1.48853 1.27488 0.96596 1.07102 0.92819 0.82920 0.74083 0.70908 0.78136 1.21276 1.19196 1.19224 1.22486 0.94926 0.93141 1.54942 0.92443 1.19115 0.95156 0.94354 0.94393 1.21467 0.98172 0.91501 1.02130 1.21058 0.91276 0.84415 1.00634 1.45021 1.10888 1.03524 1.79016 1.16089 0.85172 0.81237 0.77382 1.90917 1.15971 1.84566 1.59411 1.44920 1.09522 1.03638 1.79667 1.19543 0.99127 0.80362 0.90703 0.89221 1.22513 0.98553 0.93880 1.04416 1.23365 1.04372 0.97057 0.76849 1.86045 1.70265 1.47414 1.20037 1.18678 0.96076 0.89376 0.90130 1.17405 1.05735 0.82496 0.92091 1.91463 1.90783 1.40540 1.89257 1.21267 0.97972 0.92977 1.00827 1.21176 1.01265 0.96456 0.95929 1.21419 0.95672 1.00062 0.93795 1.20254 1.04106 0.92822 0.98808 0.93556 0.99223 0.99207 0.91466 0.91415 0.93298 0.93290 0.75161 0.74817 0.88630 0.86154 0.90742 0.83472 0.81778 0.83273 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.59 13.65 21.45 0.29 -58.30 16 2 C -0.04 -2.47 5.46 84.66 0.46 -2.01 16 3 Si 1.12 49.30 29.90 68.60 2.05 51.35 16 4 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.62 -34.34 9.11 25.60 0.23 -34.11 16 8 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.01 0.38 4.28 29.85 0.13 0.51 16 10 C -0.09 -3.52 5.27 30.59 0.16 -3.36 16 11 C 0.15 5.03 5.67 86.38 0.49 5.52 16 12 N -0.73 -18.32 5.56 -478.53 -2.66 -20.98 16 13 C 0.70 18.46 7.12 179.05 1.28 19.74 16 14 O -0.63 -22.05 14.27 -3.97 -0.06 -22.10 16 15 N -0.72 -12.70 4.86 -461.20 -2.24 -14.95 16 16 C 0.21 3.63 2.70 44.29 0.12 3.75 16 17 H 0.09 1.90 7.57 -2.39 -0.02 1.88 16 18 C -0.16 -1.44 5.67 30.75 0.17 -1.26 16 19 C 0.06 0.59 7.03 72.12 0.51 1.09 16 20 O -0.32 -6.09 10.09 -92.42 -0.93 -7.03 16 21 C 0.10 2.25 6.48 22.54 0.15 2.40 16 22 C 0.04 0.95 7.30 22.51 0.16 1.11 16 23 F -0.14 -3.38 17.05 44.97 0.77 -2.61 16 24 C -0.11 -2.13 10.02 22.26 0.22 -1.90 16 25 C -0.13 -2.67 10.04 22.25 0.22 -2.45 16 26 C -0.09 -2.20 9.08 22.31 0.20 -2.00 16 27 C -0.16 -3.38 5.56 -19.75 -0.11 -3.49 16 28 H 0.26 16.12 7.22 -92.71 -0.67 15.45 16 29 H -0.01 -0.57 8.01 -2.39 -0.02 -0.59 16 30 H -0.01 -0.56 8.01 -2.39 -0.02 -0.58 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.41 7.60 8.49 -92.71 -0.79 6.81 16 36 H 0.41 4.61 8.59 -92.71 -0.80 3.82 16 37 H 0.10 0.76 8.11 -2.39 -0.02 0.74 16 38 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 43 H 0.12 3.53 4.70 -2.91 -0.01 3.52 16 Total: -1.00 -75.75 359.05 1.19 -74.56 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -0.43 Total: 16.50 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 4.40 Total: -16.45 kcal Atomic # 7 Polarization: -89.61 SS G_CDS: -4.61 Total: -94.22 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.99 Total: -29.13 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.77 Total: -2.61 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 2.05 Total: 51.35 kcal Total: -75.75 1.19 -74.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892793496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.413 kcal (2) G-P(sol) polarization free energy of solvation -75.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds