Wall clock time and date at job start Tue Mar 31 2020 13:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99909 * 2 1 4 4 H 1.48496 * 109.47167 * 270.00006 * 3 2 1 5 5 H 1.48500 * 109.46728 * 30.00323 * 3 2 1 6 6 H 1.48497 * 109.47041 * 149.99813 * 3 2 1 7 7 C 1.37874 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00008 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00083 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47306 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99710 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00496 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99543 * 179.97438 * 11 10 9 14 14 C 1.53001 * 109.46768 * 180.02562 * 13 11 10 15 15 N 1.46502 * 109.46935 * 180.02562 * 14 13 11 16 16 C 1.38342 * 124.85582 * 90.00234 * 15 14 13 17 17 C 1.39172 * 132.32724 * 359.97438 * 16 15 14 18 18 C 1.37804 * 120.04728 * 180.02562 * 17 16 15 19 19 C 1.38665 * 120.57320 * 0.02562 * 18 17 16 20 20 C 1.37806 * 120.23746 * 359.97134 * 19 18 17 21 21 C 1.39294 * 119.78017 * 0.02991 * 20 19 18 22 22 C 1.47450 * 133.45176 * 179.97438 * 21 20 19 23 23 C 1.39293 * 133.46183 * 0.04736 * 22 21 20 24 24 C 1.37800 * 119.78977 * 180.02562 * 23 22 21 25 25 C 1.38662 * 120.23276 * 359.96890 * 24 23 22 26 26 C 1.37801 * 120.57890 * 359.97438 * 25 24 23 27 27 C 1.38342 * 124.86417 * 269.97986 * 15 14 13 28 28 H 0.97004 * 120.00417 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46883 * 59.99316 * 9 7 2 30 30 H 1.09004 * 109.47212 * 299.99814 * 9 7 2 31 31 H 0.96996 * 119.99809 * 0.02562 * 10 9 7 32 32 H 1.09003 * 109.46714 * 60.00794 * 13 11 10 33 33 H 1.08999 * 109.47569 * 300.00350 * 13 11 10 34 34 H 1.09003 * 109.47039 * 60.00767 * 14 13 11 35 35 H 1.08993 * 109.47456 * 300.00012 * 14 13 11 36 36 H 1.08002 * 119.97580 * 0.02562 * 17 16 15 37 37 H 1.07998 * 119.71420 * 179.97438 * 18 17 16 38 38 H 1.08008 * 119.88007 * 179.70447 * 19 18 17 39 39 H 1.07995 * 120.10684 * 180.02562 * 20 19 18 40 40 H 1.08003 * 120.10547 * 359.95501 * 23 22 21 41 41 H 1.08000 * 119.88794 * 180.02562 * 24 23 22 42 42 H 1.08005 * 119.71199 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.98129 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5614 -5.1050 0.0011 13 6 2.7332 -6.0288 0.0005 14 6 1.9681 -7.3538 0.0006 15 7 2.9202 -8.4673 0.0006 16 6 3.4340 -9.0682 1.1359 17 6 3.2337 -8.8331 2.4929 18 6 3.8904 -9.6006 3.4304 19 6 4.7545 -10.6105 3.0352 20 6 4.9658 -10.8585 1.6962 21 6 4.3084 -10.0902 0.7381 22 6 4.3084 -10.0904 -0.7364 23 6 4.9650 -10.8594 -1.6945 24 6 4.7538 -10.6115 -3.0335 25 6 3.8906 -9.6010 -3.4288 26 6 3.2337 -8.8335 -2.4916 27 6 3.4337 -9.0687 -1.1344 28 1 -0.4851 0.8400 0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 3.1567 -3.4354 0.0009 32 1 3.3604 -5.9709 0.8901 33 1 3.3592 -5.9711 -0.8899 34 1 1.3412 -7.4114 -0.8892 35 1 1.3419 -7.4117 0.8908 36 1 2.5631 -8.0487 2.8115 37 1 3.7313 -9.4133 4.4820 38 1 5.2670 -11.2020 3.7794 39 1 5.6389 -11.6459 1.3907 40 1 5.6383 -11.6465 -1.3889 41 1 5.2618 -11.2070 -3.7776 42 1 3.7310 -9.4143 -4.4806 43 1 2.5637 -8.0487 -2.8103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916161074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:39 Heat of formation + Delta-G solvation = 22.843440 kcal Electronic energy + Delta-G solvation = -25385.368565 eV Core-core repulsion = 21780.866368 eV Total energy + Delta-G solvation = -3604.502197 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.70134 -39.01593 -38.22380 -36.58408 -34.33419 -33.34858 -32.40789 -31.40032 -30.86017 -28.91760 -28.82214 -27.21629 -24.89641 -23.44509 -22.42528 -22.35873 -20.96006 -20.87026 -19.74395 -17.70772 -17.54216 -17.11415 -16.45368 -15.60183 -15.40953 -15.40218 -15.02675 -14.99152 -14.89813 -14.19134 -14.16886 -13.97608 -13.88994 -13.46137 -13.15621 -12.81570 -12.55285 -12.47305 -12.14301 -12.01991 -11.85778 -11.81642 -11.23859 -11.11809 -11.08466 -10.98897 -10.94819 -10.91967 -10.36987 -9.87072 -9.46252 -9.23094 -9.14433 -8.80012 -8.11701 -7.99155 -7.59055 -6.21913 -4.29305 0.64806 1.00340 1.70293 1.79875 2.51572 3.20195 3.21194 3.27225 3.29568 3.57212 3.84267 3.99460 4.30251 4.39447 4.42339 4.61694 4.76500 4.83315 4.85368 4.90719 5.03811 5.12962 5.14315 5.19629 5.28084 5.28097 5.42332 5.55007 5.55426 5.63761 5.64994 5.79754 5.86881 5.87872 6.18327 6.20731 6.38289 6.40487 6.50175 6.55772 6.73749 7.08340 7.14293 7.21552 7.31653 7.43651 7.58951 7.90476 8.51014 8.69245 8.96819 9.37441 10.88238 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.002597 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.568324 B =10780.922078 C =11817.482110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.709 5.709 11 C 0.503 3.497 12 O -0.558 6.558 13 C -0.160 4.160 14 C 0.131 3.869 15 N -0.502 5.502 16 C 0.146 3.854 17 C -0.140 4.140 18 C -0.085 4.085 19 C -0.155 4.155 20 C -0.063 4.063 21 C -0.107 4.107 22 C -0.107 4.107 23 C -0.063 4.063 24 C -0.155 4.155 25 C -0.085 4.085 26 C -0.140 4.140 27 C 0.146 3.854 28 H 0.266 0.734 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.392 0.608 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.532 -23.252 0.004 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.357 5.357 11 C 0.286 3.714 12 O -0.438 6.438 13 C -0.201 4.201 14 C 0.010 3.990 15 N -0.189 5.189 16 C 0.042 3.958 17 C -0.161 4.161 18 C -0.104 4.104 19 C -0.174 4.174 20 C -0.082 4.082 21 C -0.111 4.111 22 C -0.111 4.111 23 C -0.082 4.082 24 C -0.174 4.174 25 C -0.104 4.104 26 C -0.161 4.161 27 C 0.042 3.958 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.224 0.776 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.274 -22.989 0.008 25.181 hybrid contribution 0.817 1.258 -0.010 1.500 sum 11.091 -21.731 -0.002 24.398 Atomic orbital electron populations 1.69969 1.06124 1.27396 1.48760 1.24952 0.94925 0.99497 0.94603 0.86405 0.79634 0.82560 0.78272 1.20415 1.20944 1.19715 1.21217 0.93280 0.90428 1.53429 0.91882 1.19137 0.88276 0.81927 0.97815 1.46487 1.11304 1.06113 1.71757 1.20172 0.89100 0.84358 0.77722 1.90679 1.16768 1.84964 1.51421 1.22052 0.99431 0.93749 1.04913 1.21451 0.89413 0.82437 1.05718 1.44123 1.41181 1.30968 1.02649 1.18274 0.95517 0.93922 0.88041 1.20201 1.03920 1.02961 0.89052 1.20864 0.95778 0.94767 0.98972 1.20880 1.01236 0.99959 0.95352 1.20470 0.97930 0.97951 0.91812 1.18747 1.01564 0.99217 0.91608 1.18746 1.01564 0.99219 0.91610 1.20470 0.97936 0.97944 0.91813 1.20876 1.01272 0.99927 0.95350 1.20863 0.95755 0.94789 0.98974 1.20203 1.03918 1.02964 0.89052 1.18277 0.95512 0.93924 0.88042 0.92381 0.95449 0.95431 0.77556 0.88847 0.88848 0.88525 0.88535 0.85722 0.85469 0.85805 0.85976 0.85977 0.85804 0.85471 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.55 -14.64 9.28 -34.44 -0.32 -14.96 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.49 5.43 -5.19 -0.03 6.46 16 10 N -0.71 -14.51 5.55 -61.47 -0.34 -14.85 16 11 C 0.50 9.49 7.83 -10.98 -0.09 9.40 16 12 O -0.56 -12.64 15.98 5.56 0.09 -12.55 16 13 C -0.16 -2.20 6.02 -27.88 -0.17 -2.37 16 14 C 0.13 1.74 5.18 -4.04 -0.02 1.72 16 15 N -0.50 -6.56 2.83 -111.52 -0.32 -6.88 16 16 C 0.15 1.88 6.77 -83.82 -0.57 1.32 16 17 C -0.14 -1.60 9.85 -39.39 -0.39 -1.99 16 18 C -0.08 -0.81 10.01 -39.58 -0.40 -1.21 16 19 C -0.15 -1.41 10.03 -39.58 -0.40 -1.81 16 20 C -0.06 -0.64 10.09 -39.35 -0.40 -1.03 16 21 C -0.11 -1.33 6.35 -104.99 -0.67 -1.99 16 22 C -0.11 -1.33 6.35 -104.99 -0.67 -1.99 16 23 C -0.06 -0.64 10.09 -39.35 -0.40 -1.03 16 24 C -0.15 -1.41 10.03 -39.58 -0.40 -1.81 16 25 C -0.08 -0.81 10.01 -39.58 -0.40 -1.21 16 26 C -0.14 -1.60 9.86 -39.39 -0.39 -1.99 16 27 C 0.15 1.88 6.77 -83.81 -0.57 1.32 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.39 6.92 8.32 -40.82 -0.34 6.58 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.10 1.30 7.87 -51.93 -0.41 0.89 16 35 H 0.10 1.30 7.86 -51.93 -0.41 0.89 16 36 H 0.12 1.33 7.92 -52.49 -0.42 0.91 16 37 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 43 H 0.12 1.33 7.92 -52.49 -0.42 0.91 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -32.49 370.63 -11.36 -43.85 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.75 Total: 5.81 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -6.34 Total: -11.51 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.08 Total: -46.84 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.49 -11.36 -43.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916161074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.691 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds