Wall clock time and date at job start Tue Mar 31 2020 13:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99909 * 2 1 4 4 H 1.48496 * 109.47167 * 270.00006 * 3 2 1 5 5 H 1.48500 * 109.46728 * 30.00323 * 3 2 1 6 6 H 1.48497 * 109.47041 * 149.99813 * 3 2 1 7 7 C 1.37874 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00008 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00083 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47306 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99710 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00496 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99543 * 179.97438 * 11 10 9 14 14 C 1.53001 * 109.46768 * 180.02562 * 13 11 10 15 15 N 1.46502 * 109.46935 * 180.02562 * 14 13 11 16 16 C 1.38342 * 124.85582 * 90.00234 * 15 14 13 17 17 C 1.39172 * 132.32724 * 359.97438 * 16 15 14 18 18 C 1.37804 * 120.04728 * 180.02562 * 17 16 15 19 19 C 1.38665 * 120.57320 * 0.02562 * 18 17 16 20 20 C 1.37806 * 120.23746 * 359.97134 * 19 18 17 21 21 C 1.39294 * 119.78017 * 0.02991 * 20 19 18 22 22 C 1.47450 * 133.45176 * 179.97438 * 21 20 19 23 23 C 1.39293 * 133.46183 * 0.04736 * 22 21 20 24 24 C 1.37800 * 119.78977 * 180.02562 * 23 22 21 25 25 C 1.38662 * 120.23276 * 359.96890 * 24 23 22 26 26 C 1.37801 * 120.57890 * 359.97438 * 25 24 23 27 27 C 1.38342 * 124.86417 * 269.97986 * 15 14 13 28 28 H 0.97004 * 120.00417 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46883 * 59.99316 * 9 7 2 30 30 H 1.09004 * 109.47212 * 299.99814 * 9 7 2 31 31 H 0.96996 * 119.99809 * 0.02562 * 10 9 7 32 32 H 1.09003 * 109.46714 * 60.00794 * 13 11 10 33 33 H 1.08999 * 109.47569 * 300.00350 * 13 11 10 34 34 H 1.09003 * 109.47039 * 60.00767 * 14 13 11 35 35 H 1.08993 * 109.47456 * 300.00012 * 14 13 11 36 36 H 1.08002 * 119.97580 * 0.02562 * 17 16 15 37 37 H 1.07998 * 119.71420 * 179.97438 * 18 17 16 38 38 H 1.08008 * 119.88007 * 179.70447 * 19 18 17 39 39 H 1.07995 * 120.10684 * 180.02562 * 20 19 18 40 40 H 1.08003 * 120.10547 * 359.95501 * 23 22 21 41 41 H 1.08000 * 119.88794 * 180.02562 * 24 23 22 42 42 H 1.08005 * 119.71199 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.98129 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5614 -5.1050 0.0011 13 6 2.7332 -6.0288 0.0005 14 6 1.9681 -7.3538 0.0006 15 7 2.9202 -8.4673 0.0006 16 6 3.4340 -9.0682 1.1359 17 6 3.2337 -8.8331 2.4929 18 6 3.8904 -9.6006 3.4304 19 6 4.7545 -10.6105 3.0352 20 6 4.9658 -10.8585 1.6962 21 6 4.3084 -10.0902 0.7381 22 6 4.3084 -10.0904 -0.7364 23 6 4.9650 -10.8594 -1.6945 24 6 4.7538 -10.6115 -3.0335 25 6 3.8906 -9.6010 -3.4288 26 6 3.2337 -8.8335 -2.4916 27 6 3.4337 -9.0687 -1.1344 28 1 -0.4851 0.8400 0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 3.1567 -3.4354 0.0009 32 1 3.3604 -5.9709 0.8901 33 1 3.3592 -5.9711 -0.8899 34 1 1.3412 -7.4114 -0.8892 35 1 1.3419 -7.4117 0.8908 36 1 2.5631 -8.0487 2.8115 37 1 3.7313 -9.4133 4.4820 38 1 5.2670 -11.2020 3.7794 39 1 5.6389 -11.6459 1.3907 40 1 5.6383 -11.6465 -1.3889 41 1 5.2618 -11.2070 -3.7776 42 1 3.7310 -9.4143 -4.4806 43 1 2.5637 -8.0487 -2.8103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916161074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:38 Heat of formation + Delta-G solvation = 5.082049 kcal Electronic energy + Delta-G solvation = -25386.138756 eV Core-core repulsion = 21780.866368 eV Total energy + Delta-G solvation = -3605.272389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.54032 -40.64811 -38.97995 -37.47455 -36.22903 -34.47376 -34.25645 -32.38799 -31.62933 -30.04861 -29.68620 -28.88339 -26.10342 -24.63427 -23.89452 -23.20979 -21.86499 -21.74879 -21.34139 -19.09778 -18.51681 -18.17776 -17.67163 -17.21619 -16.86911 -16.75466 -16.35062 -15.78564 -15.77310 -15.65680 -15.22467 -14.86954 -14.80437 -14.46487 -14.42827 -14.16775 -14.02508 -13.68461 -13.64183 -13.25155 -12.94917 -12.83832 -12.74030 -12.58349 -12.34817 -12.26098 -11.88544 -11.88218 -11.75620 -11.52459 -10.92546 -10.83973 -10.66028 -9.93261 -9.90902 -8.91527 -8.43973 -8.32319 -6.49212 -0.13350 0.21636 0.89713 1.01059 1.41311 1.43419 1.54233 1.57115 1.62245 2.30161 2.54776 2.80035 3.02621 3.05391 3.52557 3.57450 3.64301 3.65573 3.92906 4.02889 4.05184 4.24926 4.27695 4.29998 4.35068 4.43598 4.54682 4.60262 4.67828 4.71864 4.79715 4.92068 5.06564 5.07191 5.15397 5.19824 5.42633 5.45484 5.46236 5.61558 5.62778 5.64927 5.71758 5.77682 5.80742 6.00774 6.25868 6.26329 6.60948 6.79001 7.19040 7.37382 8.79650 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.002597 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.568324 B =10780.922078 C =11817.482110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.266 3.734 10 N -0.706 5.706 11 C 0.504 3.496 12 O -0.598 6.598 13 C -0.137 4.137 14 C 0.139 3.861 15 N -0.508 5.508 16 C 0.119 3.881 17 C -0.159 4.159 18 C -0.085 4.085 19 C -0.151 4.151 20 C -0.068 4.068 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.068 4.068 24 C -0.151 4.151 25 C -0.085 4.085 26 C -0.159 4.159 27 C 0.119 3.881 28 H 0.269 0.731 29 H -0.010 1.010 30 H -0.010 1.010 31 H 0.408 0.592 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.734 -24.394 0.008 28.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.596 4.596 8 H 0.101 0.899 9 C 0.143 3.857 10 N -0.355 5.355 11 C 0.291 3.709 12 O -0.480 6.480 13 C -0.178 4.178 14 C 0.017 3.983 15 N -0.196 5.196 16 C 0.017 3.983 17 C -0.180 4.180 18 C -0.103 4.103 19 C -0.170 4.170 20 C -0.086 4.086 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.086 4.086 24 C -0.170 4.170 25 C -0.103 4.103 26 C -0.180 4.180 27 C 0.017 3.983 28 H 0.078 0.922 29 H 0.008 0.992 30 H 0.008 0.992 31 H 0.244 0.756 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.141 0.859 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.172 0.828 42 H 0.169 0.831 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.528 -24.174 0.012 27.702 hybrid contribution -0.187 1.470 -0.012 1.482 sum 13.341 -22.704 0.000 26.333 Atomic orbital electron populations 1.70126 1.08229 1.28634 1.49846 1.26048 0.95777 1.03866 0.93792 0.85170 0.78500 0.77015 0.78632 1.19577 1.20866 1.17992 1.21611 0.94280 0.90637 1.53078 0.89940 1.18576 0.88640 0.84178 0.94306 1.46227 1.11336 1.05578 1.72335 1.20995 0.89383 0.84794 0.75746 1.90660 1.19077 1.85521 1.52758 1.21892 0.98044 0.91334 1.06518 1.21228 0.89455 0.82662 1.04978 1.44026 1.41484 1.30964 1.03143 1.18603 0.96484 0.94819 0.88440 1.20390 1.04772 1.03806 0.89053 1.21224 0.95035 0.94229 0.99836 1.21276 1.00521 0.99552 0.95688 1.20827 0.97827 0.98060 0.91893 1.19052 1.02077 0.99675 0.92153 1.19051 1.02077 0.99677 0.92154 1.20826 0.97833 0.98053 0.91894 1.21272 1.00547 0.99528 0.95685 1.21224 0.95012 0.94251 0.99838 1.20392 1.04771 1.03808 0.89052 1.18606 0.96479 0.94820 0.88442 0.92178 0.99216 0.99191 0.75593 0.87055 0.87055 0.89327 0.89338 0.85947 0.83131 0.82781 0.83644 0.83646 0.82781 0.83132 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 2 C 0.00 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.98 42.13 29.54 68.60 2.03 44.16 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.56 -30.25 9.28 25.60 0.24 -30.02 16 8 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 9 C 0.27 14.47 5.43 85.63 0.46 14.93 16 10 N -0.71 -29.47 5.55 -466.77 -2.59 -32.06 16 11 C 0.50 19.60 7.83 87.66 0.69 20.28 16 12 O -0.60 -28.48 15.98 -3.03 -0.05 -28.53 16 13 C -0.14 -3.77 6.02 29.85 0.18 -3.59 16 14 C 0.14 3.85 5.18 86.38 0.45 4.29 16 15 N -0.51 -13.60 2.83 -506.74 -1.43 -15.03 16 16 C 0.12 3.10 6.77 38.83 0.26 3.36 16 17 C -0.16 -3.61 9.85 22.39 0.22 -3.39 16 18 C -0.08 -1.49 10.01 22.27 0.22 -1.26 16 19 C -0.15 -2.37 10.03 22.27 0.22 -2.15 16 20 C -0.07 -1.24 10.09 22.42 0.23 -1.01 16 21 C -0.13 -3.02 6.35 -20.10 -0.13 -3.15 16 22 C -0.13 -3.02 6.35 -20.10 -0.13 -3.15 16 23 C -0.07 -1.23 10.09 22.42 0.23 -1.01 16 24 C -0.15 -2.37 10.03 22.27 0.22 -2.15 16 25 C -0.08 -1.49 10.01 22.27 0.22 -1.26 16 26 C -0.16 -3.61 9.86 22.39 0.22 -3.39 16 27 C 0.12 3.10 6.77 38.83 0.26 3.36 16 28 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 29 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 30 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H 0.41 14.22 8.32 -92.71 -0.77 13.45 16 32 H 0.11 2.72 8.14 -2.39 -0.02 2.71 16 33 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.09 2.55 7.87 -2.39 -0.02 2.53 16 35 H 0.09 2.54 7.86 -2.39 -0.02 2.53 16 36 H 0.12 2.69 7.92 -2.91 -0.02 2.66 16 37 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 38 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 39 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 41 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 42 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 43 H 0.12 2.69 7.92 -2.91 -0.02 2.66 16 Total: -1.00 -73.48 370.63 3.03 -70.45 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.25 Total: 25.10 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 4.54 Total: -8.55 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -3.74 Total: -102.64 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.05 Total: -28.53 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -73.48 3.03 -70.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916161074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.536 kcal (2) G-P(sol) polarization free energy of solvation -73.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds