Wall clock time and date at job start Tue Mar 31 2020 13:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46909 * 299.99046 * 9 7 2 11 11 O 1.42895 * 109.47614 * 59.99700 * 9 7 2 12 12 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 13 13 N 1.46898 * 109.47006 * 179.97438 * 12 9 7 14 14 C 1.46844 * 111.00317 * 294.20906 * 13 12 9 15 15 C 1.53033 * 109.52669 * 174.16475 * 14 13 12 16 16 C 1.53120 * 109.28099 * 59.17356 * 15 14 13 17 17 C 1.53113 * 109.16191 * 302.34923 * 16 15 14 18 18 H 1.08993 * 109.53946 * 297.69308 * 17 16 15 19 19 C 1.50700 * 109.50520 * 177.59048 * 17 16 15 20 20 N 1.28336 * 124.90390 * 299.90220 * 19 17 16 21 21 C 1.33488 * 117.83341 * 179.75502 * 20 19 17 22 22 C 1.33866 * 113.18424 * 0.54751 * 21 20 19 23 23 S 1.70749 * 124.90433 * 120.19483 * 19 17 16 24 24 C 1.51715 * 110.89372 * 179.65452 * 22 21 20 25 25 C 1.54305 * 104.80664 * 342.78197 * 24 22 21 26 26 C 1.52620 * 137.14835 * 180.20462 * 21 20 19 27 27 C 1.46848 * 110.99765 * 169.99646 * 13 12 9 28 28 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 29 29 H 0.96696 * 113.99976 * 59.99312 * 11 9 7 30 30 H 1.09001 * 109.47002 * 299.99404 * 12 9 7 31 31 H 1.09001 * 109.46801 * 59.99558 * 12 9 7 32 32 H 1.08998 * 109.45974 * 294.17884 * 14 13 12 33 33 H 1.09003 * 109.46302 * 54.14147 * 14 13 12 34 34 H 1.09005 * 109.49559 * 299.23528 * 15 14 13 35 35 H 1.08995 * 109.53645 * 179.14195 * 15 14 13 36 36 H 1.08994 * 109.52247 * 182.44050 * 16 15 14 37 37 H 1.09001 * 109.57116 * 62.28804 * 16 15 14 38 38 H 1.09002 * 110.36881 * 101.60803 * 24 22 21 39 39 H 1.08996 * 110.37013 * 223.94649 * 24 22 21 40 40 H 1.09000 * 110.96630 * 268.07114 * 25 24 22 41 41 H 1.09006 * 111.00218 * 144.32392 * 25 24 22 42 42 H 1.09001 * 110.32054 * 316.64358 * 26 21 20 43 43 H 1.08997 * 110.31999 * 78.74876 * 26 21 20 44 44 H 1.08996 * 109.46418 * 305.85486 * 27 13 12 45 45 H 1.09003 * 109.46193 * 65.83407 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8904 11 8 0.4299 -2.5752 -1.1664 12 6 2.2454 -3.6621 0.0005 13 7 1.5109 -4.9342 0.0012 14 6 0.7614 -5.1086 1.2518 15 6 -0.1029 -6.3681 1.1588 16 6 0.7970 -7.5813 0.9078 17 6 1.6021 -7.3532 -0.3745 18 1 0.9216 -7.2646 -1.2213 19 6 2.5338 -8.5165 -0.5973 20 7 3.4571 -8.8839 0.2149 21 6 4.1996 -9.9407 -0.1224 22 6 3.8607 -10.4668 -1.3057 23 16 2.5182 -9.5318 -1.9700 24 6 4.7406 -11.6564 -1.6409 25 6 5.9576 -11.5239 -0.7014 26 6 5.3592 -10.7308 0.4779 27 6 2.4170 -6.0651 -0.2370 28 1 -0.4850 -0.8401 -0.0004 29 1 0.9223 -2.5299 -1.9974 30 1 2.8720 -3.6043 -0.8895 31 1 2.8721 -3.6042 0.8905 32 1 1.4596 -5.2079 2.0828 33 1 0.1224 -4.2410 1.4162 34 1 -0.8107 -6.2637 0.3365 35 1 -0.6477 -6.5061 2.0926 36 1 0.1820 -8.4744 0.7977 37 1 1.4791 -7.7101 1.7482 38 1 4.2098 -12.5881 -1.4450 39 1 5.0586 -11.6116 -2.6824 40 1 6.7609 -10.9641 -1.1804 41 1 6.3079 -12.5033 -0.3753 42 1 6.1039 -10.0526 0.8945 43 1 4.9951 -11.4114 1.2476 44 1 2.9804 -5.8922 -1.1539 45 1 3.1074 -6.1600 0.6012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932190888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:30 Heat of formation + Delta-G solvation = -14.584866 kcal Electronic energy + Delta-G solvation = -24917.296743 eV Core-core repulsion = 21446.615484 eV Total energy + Delta-G solvation = -3470.681259 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.58830 -38.92678 -36.62744 -35.68857 -33.08936 -32.01893 -31.32109 -28.77727 -28.29979 -27.60687 -24.92844 -24.62430 -22.67058 -22.45681 -21.43986 -20.54205 -19.84773 -18.38778 -18.11791 -17.27917 -16.24148 -15.67589 -14.97864 -14.77464 -14.59036 -14.42424 -14.24353 -14.03026 -13.72850 -13.57380 -13.33933 -13.21898 -13.01896 -12.97672 -12.48558 -12.22527 -12.00666 -11.63263 -11.61227 -11.45155 -11.32916 -11.22612 -10.98078 -10.76725 -10.64825 -10.47998 -10.25773 -10.09139 -9.95996 -9.55949 -9.34311 -9.13494 -8.69036 -8.43487 -7.99129 -7.71376 -6.32118 -4.15288 0.59169 1.06299 1.65957 2.60115 3.43629 3.44894 3.51707 3.64176 4.16978 4.21665 4.45293 4.55970 4.56639 4.76981 4.85985 4.96457 5.06379 5.20755 5.28083 5.30537 5.34280 5.38817 5.39246 5.49146 5.49751 5.65158 5.69375 5.72592 5.82298 5.87586 5.89582 5.99178 6.03858 6.08286 6.18513 6.20735 6.38729 6.40162 6.54980 6.70196 7.42216 7.54375 7.63077 7.68222 8.06701 8.38826 8.89448 9.26650 9.70948 11.08057 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022735 B = 0.002618 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.291306 B =10693.573333 C =11150.446915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.035 3.965 3 Si 1.066 2.934 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.652 4.652 8 H 0.047 0.953 9 C 0.221 3.779 10 H 0.048 0.952 11 O -0.571 6.571 12 C 0.040 3.960 13 N -0.527 5.527 14 C 0.054 3.946 15 C -0.114 4.114 16 C -0.103 4.103 17 C -0.005 4.005 18 H 0.099 0.901 19 C 0.077 3.923 20 N -0.463 5.463 21 C 0.047 3.953 22 C -0.261 4.261 23 S 0.132 5.868 24 C -0.036 4.036 25 C -0.116 4.116 26 C -0.040 4.040 27 C 0.071 3.929 28 H 0.285 0.715 29 H 0.351 0.649 30 H 0.064 0.936 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.768 -25.095 -1.786 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.174 4.174 3 Si 0.894 3.106 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.690 4.690 8 H 0.065 0.935 9 C 0.164 3.836 10 H 0.066 0.934 11 O -0.374 6.374 12 C -0.087 4.087 13 N -0.251 5.251 14 C -0.074 4.074 15 C -0.152 4.152 16 C -0.143 4.143 17 C -0.028 4.028 18 H 0.117 0.883 19 C -0.203 4.203 20 N -0.176 5.176 21 C -0.084 4.084 22 C -0.382 4.382 23 S 0.391 5.609 24 C -0.076 4.076 25 C -0.155 4.155 26 C -0.080 4.080 27 C -0.059 4.059 28 H 0.097 0.903 29 H 0.195 0.805 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.178 -23.225 -2.166 24.130 hybrid contribution 2.063 -1.935 0.816 2.943 sum 8.241 -25.160 -1.350 26.509 Atomic orbital electron populations 1.70628 1.06881 1.32312 1.42855 1.25753 0.96513 1.02354 0.92776 0.83616 0.74950 0.75545 0.76469 1.20738 1.21451 1.21539 1.22445 0.94331 0.92670 1.59558 0.93458 1.19488 0.88248 0.90128 0.85769 0.93415 1.86457 1.38705 1.96499 1.15744 1.22903 0.96960 0.89091 0.99753 1.61917 1.26893 1.01584 1.34725 1.22107 0.96769 0.98460 0.90072 1.21581 0.97900 0.93599 1.02097 1.21570 0.98073 0.98355 0.96256 1.19945 0.93700 0.88712 1.00424 0.88320 1.26866 0.98581 1.01672 0.93199 1.65324 1.05750 1.13961 1.32584 1.21647 0.99615 0.93010 0.94122 1.26993 1.03933 1.06001 1.01276 1.83804 1.29594 1.23964 1.23509 1.20624 0.93255 0.93235 1.00475 1.22358 0.97038 1.00858 0.95252 1.20846 0.92858 0.96562 0.97756 1.21954 0.93631 0.89297 1.00979 0.90347 0.80458 0.91753 0.95425 0.95569 0.89783 0.90780 0.91431 0.92053 0.91295 0.89929 0.90480 0.90348 0.89555 0.90029 0.89664 0.91262 0.94395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.34 13.53 55.43 0.75 -26.59 16 2 C 0.03 1.00 5.40 -17.82 -0.10 0.91 16 3 Si 1.07 25.16 29.90 -169.99 -5.08 20.08 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.65 -18.25 8.76 -34.44 -0.30 -18.55 16 8 H 0.05 1.31 7.74 -52.48 -0.41 0.90 16 9 C 0.22 5.59 2.30 -27.88 -0.06 5.52 16 10 H 0.05 1.30 6.29 -51.93 -0.33 0.98 16 11 O -0.57 -14.53 11.88 -35.23 -0.42 -14.95 16 12 C 0.04 0.85 4.56 -3.82 -0.02 0.84 16 13 N -0.53 -9.66 4.52 -234.67 -1.06 -10.72 16 14 C 0.05 0.93 5.29 -3.84 -0.02 0.91 16 15 C -0.11 -1.58 6.09 -26.65 -0.16 -1.75 16 16 C -0.10 -1.35 5.26 -26.61 -0.14 -1.49 16 17 C -0.01 -0.07 2.79 -91.69 -0.26 -0.33 16 18 H 0.10 1.31 8.12 -51.93 -0.42 0.89 16 19 C 0.08 1.03 5.89 -13.74 -0.08 0.95 16 20 N -0.46 -6.67 10.52 -7.23 -0.08 -6.74 16 21 C 0.05 0.57 7.70 -82.45 -0.63 -0.07 16 22 C -0.26 -2.82 7.42 -35.34 -0.26 -3.09 16 23 S 0.13 1.49 23.17 -107.50 -2.49 -1.00 16 24 C -0.04 -0.26 6.80 -26.70 -0.18 -0.44 16 25 C -0.12 -0.69 7.12 -25.42 -0.18 -0.87 16 26 C -0.04 -0.34 6.81 -26.30 -0.18 -0.52 16 27 C 0.07 1.14 4.72 -3.83 -0.02 1.13 16 28 H 0.28 8.87 6.47 -40.82 -0.26 8.61 16 29 H 0.35 8.17 9.04 45.56 0.41 8.58 16 30 H 0.06 1.35 7.99 -51.93 -0.41 0.93 16 31 H 0.03 0.60 8.12 -51.93 -0.42 0.18 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 1.62 6.21 -51.93 -0.32 1.30 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.11 8.02 -51.93 -0.42 0.69 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -32.14 367.47 -11.89 -44.03 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.45 Total: 7.19 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -2.60 Total: -16.84 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.39 Total: -44.06 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.42 Total: -14.95 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.08 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.49 Total: -1.00 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.14 -11.89 -44.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932190888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.450 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds