Wall clock time and date at job start Tue Mar 31 2020 13:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46909 * 299.99046 * 9 7 2 11 11 O 1.42895 * 109.47614 * 59.99700 * 9 7 2 12 12 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 13 13 N 1.46898 * 109.47006 * 179.97438 * 12 9 7 14 14 C 1.46844 * 111.00317 * 294.20906 * 13 12 9 15 15 C 1.53033 * 109.52669 * 174.16475 * 14 13 12 16 16 C 1.53120 * 109.28099 * 59.17356 * 15 14 13 17 17 C 1.53113 * 109.16191 * 302.34923 * 16 15 14 18 18 H 1.08993 * 109.53946 * 297.69308 * 17 16 15 19 19 C 1.50700 * 109.50520 * 177.59048 * 17 16 15 20 20 N 1.28336 * 124.90390 * 299.90220 * 19 17 16 21 21 C 1.33488 * 117.83341 * 179.75502 * 20 19 17 22 22 C 1.33866 * 113.18424 * 0.54751 * 21 20 19 23 23 S 1.70749 * 124.90433 * 120.19483 * 19 17 16 24 24 C 1.51715 * 110.89372 * 179.65452 * 22 21 20 25 25 C 1.54305 * 104.80664 * 342.78197 * 24 22 21 26 26 C 1.52620 * 137.14835 * 180.20462 * 21 20 19 27 27 C 1.46848 * 110.99765 * 169.99646 * 13 12 9 28 28 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 29 29 H 0.96696 * 113.99976 * 59.99312 * 11 9 7 30 30 H 1.09001 * 109.47002 * 299.99404 * 12 9 7 31 31 H 1.09001 * 109.46801 * 59.99558 * 12 9 7 32 32 H 1.08998 * 109.45974 * 294.17884 * 14 13 12 33 33 H 1.09003 * 109.46302 * 54.14147 * 14 13 12 34 34 H 1.09005 * 109.49559 * 299.23528 * 15 14 13 35 35 H 1.08995 * 109.53645 * 179.14195 * 15 14 13 36 36 H 1.08994 * 109.52247 * 182.44050 * 16 15 14 37 37 H 1.09001 * 109.57116 * 62.28804 * 16 15 14 38 38 H 1.09002 * 110.36881 * 101.60803 * 24 22 21 39 39 H 1.08996 * 110.37013 * 223.94649 * 24 22 21 40 40 H 1.09000 * 110.96630 * 268.07114 * 25 24 22 41 41 H 1.09006 * 111.00218 * 144.32392 * 25 24 22 42 42 H 1.09001 * 110.32054 * 316.64358 * 26 21 20 43 43 H 1.08997 * 110.31999 * 78.74876 * 26 21 20 44 44 H 1.08996 * 109.46418 * 305.85486 * 27 13 12 45 45 H 1.09003 * 109.46193 * 65.83407 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8904 11 8 0.4299 -2.5752 -1.1664 12 6 2.2454 -3.6621 0.0005 13 7 1.5109 -4.9342 0.0012 14 6 0.7614 -5.1086 1.2518 15 6 -0.1029 -6.3681 1.1588 16 6 0.7970 -7.5813 0.9078 17 6 1.6021 -7.3532 -0.3745 18 1 0.9216 -7.2646 -1.2213 19 6 2.5338 -8.5165 -0.5973 20 7 3.4571 -8.8839 0.2149 21 6 4.1996 -9.9407 -0.1224 22 6 3.8607 -10.4668 -1.3057 23 16 2.5182 -9.5318 -1.9700 24 6 4.7406 -11.6564 -1.6409 25 6 5.9576 -11.5239 -0.7014 26 6 5.3592 -10.7308 0.4779 27 6 2.4170 -6.0651 -0.2370 28 1 -0.4850 -0.8401 -0.0004 29 1 0.9223 -2.5299 -1.9974 30 1 2.8720 -3.6043 -0.8895 31 1 2.8721 -3.6042 0.8905 32 1 1.4596 -5.2079 2.0828 33 1 0.1224 -4.2410 1.4162 34 1 -0.8107 -6.2637 0.3365 35 1 -0.6477 -6.5061 2.0926 36 1 0.1820 -8.4744 0.7977 37 1 1.4791 -7.7101 1.7482 38 1 4.2098 -12.5881 -1.4450 39 1 5.0586 -11.6116 -2.6824 40 1 6.7609 -10.9641 -1.1804 41 1 6.3079 -12.5033 -0.3753 42 1 6.1039 -10.0526 0.8945 43 1 4.9951 -11.4114 1.2476 44 1 2.9804 -5.8922 -1.1539 45 1 3.1074 -6.1600 0.6012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932190888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:29 Heat of formation + Delta-G solvation = -36.311679 kcal Electronic energy + Delta-G solvation = -24918.238888 eV Core-core repulsion = 21446.615484 eV Total energy + Delta-G solvation = -3471.623404 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47135 -40.23569 -38.08707 -36.97106 -34.52684 -34.18808 -32.49932 -30.07488 -29.41761 -28.52703 -26.63276 -25.86629 -24.31874 -23.58309 -22.43940 -21.77709 -21.13716 -19.44712 -19.31949 -18.96880 -17.28134 -16.88070 -16.58198 -16.32970 -15.86209 -15.78988 -15.53250 -15.32241 -14.97789 -14.95140 -14.54159 -14.48890 -14.19345 -14.01832 -13.73715 -13.58278 -13.48631 -12.90511 -12.74411 -12.56553 -12.42357 -12.17319 -12.15385 -12.13807 -11.94014 -11.93958 -11.82183 -11.74270 -11.46507 -11.12074 -10.62245 -10.48977 -10.22237 -10.07356 -9.52593 -9.28424 -8.61457 -6.46213 -0.30217 0.20645 0.76878 1.52668 1.60277 1.69160 1.80039 2.53876 2.65450 2.92606 3.17524 3.54377 3.57917 3.68693 3.79620 3.91938 4.05528 4.05881 4.11007 4.15880 4.26098 4.32544 4.43638 4.44214 4.48939 4.60466 4.63124 4.71414 4.72780 4.79174 4.83056 4.84826 4.87761 4.95060 5.01591 5.08398 5.08518 5.24209 5.26749 5.35522 5.45192 5.80361 6.00729 6.13278 6.17543 6.57001 6.73040 7.25098 7.51465 8.76469 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022735 B = 0.002618 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.291306 B =10693.573333 C =11150.446915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.016 4.016 3 Si 1.115 2.885 4 H -0.284 1.284 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.663 4.663 8 H 0.048 0.952 9 C 0.224 3.776 10 H 0.022 0.978 11 O -0.579 6.579 12 C 0.056 3.944 13 N -0.530 5.530 14 C 0.053 3.947 15 C -0.105 4.105 16 C -0.095 4.095 17 C 0.001 3.999 18 H 0.104 0.896 19 C 0.053 3.947 20 N -0.491 5.491 21 C 0.013 3.987 22 C -0.257 4.257 23 S 0.154 5.846 24 C -0.037 4.037 25 C -0.105 4.105 26 C -0.042 4.042 27 C 0.078 3.922 28 H 0.268 0.732 29 H 0.360 0.640 30 H 0.067 0.933 31 H 0.019 0.981 32 H 0.023 0.977 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.177 -27.241 -2.541 28.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.218 4.218 3 Si 0.937 3.063 4 H -0.210 1.210 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.701 4.701 8 H 0.066 0.934 9 C 0.166 3.834 10 H 0.039 0.961 11 O -0.383 6.383 12 C -0.072 4.072 13 N -0.254 5.254 14 C -0.075 4.075 15 C -0.143 4.143 16 C -0.134 4.134 17 C -0.021 4.021 18 H 0.122 0.878 19 C -0.227 4.227 20 N -0.205 5.205 21 C -0.117 4.117 22 C -0.378 4.378 23 S 0.413 5.587 24 C -0.077 4.077 25 C -0.145 4.145 26 C -0.082 4.082 27 C -0.051 4.051 28 H 0.079 0.921 29 H 0.205 0.795 30 H 0.086 0.914 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.133 0.867 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.086 0.914 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.595 -25.400 -2.923 26.672 hybrid contribution 1.650 -1.364 1.034 2.377 sum 9.245 -26.764 -1.889 28.378 Atomic orbital electron populations 1.70771 1.07951 1.31278 1.45436 1.27280 0.96518 1.06356 0.91674 0.82978 0.74133 0.71340 0.77878 1.20959 1.19393 1.19753 1.22833 0.94579 0.94012 1.58658 0.93409 1.19320 0.88210 0.91039 0.84832 0.96053 1.86411 1.39146 1.96575 1.16216 1.22537 0.95746 0.89461 0.99456 1.61876 1.27005 1.01197 1.35359 1.22120 0.96635 0.99187 0.89541 1.21534 0.97429 0.92135 1.03175 1.21497 0.97785 0.98541 0.95581 1.19815 0.93599 0.87748 1.00957 0.87801 1.26659 0.99090 1.02412 0.94495 1.65311 1.06353 1.15132 1.33664 1.22277 1.00857 0.93119 0.95400 1.27602 1.03185 1.06427 1.00553 1.83639 1.29760 1.23277 1.22013 1.20850 0.93085 0.92243 1.01530 1.22397 0.96382 1.01933 0.93739 1.21026 0.91676 0.96486 0.98993 1.21905 0.93397 0.89588 1.00228 0.92126 0.79452 0.91409 0.96299 0.95839 0.92529 0.90895 0.89413 0.89947 0.92272 0.88167 0.89192 0.90119 0.86680 0.90469 0.88709 0.91414 0.95680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.49 13.53 21.45 0.29 -57.20 16 2 C -0.02 -0.93 5.40 84.65 0.46 -0.47 16 3 Si 1.12 50.40 29.90 68.60 2.05 52.46 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.66 -37.64 8.76 25.60 0.22 -37.41 16 8 H 0.05 2.66 7.74 -2.91 -0.02 2.63 16 9 C 0.22 11.66 2.30 29.85 0.07 11.73 16 10 H 0.02 1.24 6.29 -2.39 -0.02 1.23 16 11 O -0.58 -30.23 11.88 -148.98 -1.77 -32.00 16 12 C 0.06 2.44 4.56 86.31 0.39 2.83 16 13 N -0.53 -19.85 4.52 -896.35 -4.05 -23.91 16 14 C 0.05 1.88 5.29 86.32 0.46 2.34 16 15 C -0.10 -2.87 6.09 30.65 0.19 -2.68 16 16 C -0.09 -2.39 5.26 30.67 0.16 -2.23 16 17 C 0.00 0.03 2.79 -11.49 -0.03 0.00 16 18 H 0.10 2.67 8.12 -2.39 -0.02 2.65 16 19 C 0.05 1.38 5.89 88.62 0.52 1.90 16 20 N -0.49 -13.93 10.52 -176.80 -1.86 -15.79 16 21 C 0.01 0.31 7.70 41.93 0.32 0.63 16 22 C -0.26 -5.04 7.42 25.02 0.19 -4.85 16 23 S 0.15 3.25 23.17 -56.49 -1.31 1.94 16 24 C -0.04 -0.42 6.80 30.61 0.21 -0.21 16 25 C -0.11 -0.93 7.12 31.44 0.22 -0.70 16 26 C -0.04 -0.63 6.81 30.88 0.21 -0.42 16 27 C 0.08 2.54 4.72 86.33 0.41 2.95 16 28 H 0.27 17.32 6.47 -92.71 -0.60 16.72 16 29 H 0.36 17.03 9.04 -74.06 -0.67 16.36 16 30 H 0.07 2.87 7.99 -2.39 -0.02 2.85 16 31 H 0.02 0.84 8.12 -2.39 -0.02 0.82 16 32 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 2.31 6.21 -2.39 -0.01 2.29 16 34 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.07 2.19 8.02 -2.39 -0.02 2.17 16 45 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -70.66 367.47 -2.17 -72.82 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.49 Total: 28.28 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: 4.00 Total: -26.60 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -5.62 Total: -96.90 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.77 Total: -32.00 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.05 Total: 52.46 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.31 Total: 1.94 kcal Total: -70.66 -2.17 -72.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932190888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.510 kcal (2) G-P(sol) polarization free energy of solvation -70.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds