Wall clock time and date at job start Tue Mar 31 2020 13:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99871 * 2 1 4 4 H 1.48492 * 109.47603 * 240.00109 * 3 2 1 5 5 H 1.48501 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46839 * 120.00296 * 3 2 1 7 7 C 1.37876 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00476 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99718 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47375 * 300.00294 * 9 7 2 11 11 O 1.42907 * 109.47323 * 60.00217 * 9 7 2 12 12 C 1.53001 * 109.47208 * 179.97438 * 9 7 2 13 13 N 1.46895 * 109.47286 * 179.97438 * 12 9 7 14 14 C 1.46847 * 111.00100 * 170.00266 * 13 12 9 15 15 C 1.53038 * 109.52407 * 185.84143 * 14 13 12 16 16 C 1.53121 * 109.27633 * 300.82065 * 15 14 13 17 17 C 1.50706 * 109.52239 * 177.56142 * 16 15 14 18 18 N 1.28337 * 124.89817 * 299.69335 * 17 16 15 19 19 C 1.33493 * 117.83559 * 180.28077 * 18 17 16 20 20 C 1.33872 * 113.17676 * 359.95764 * 19 18 17 21 21 S 1.70748 * 124.90732 * 120.00026 * 17 16 15 22 22 C 1.51714 * 110.88804 * 180.02562 * 20 19 18 23 23 C 1.54307 * 104.80676 * 17.23542 * 22 20 19 24 24 C 1.52612 * 137.15543 * 179.91026 * 19 18 17 25 25 C 1.53118 * 109.16410 * 57.65844 * 16 15 14 26 26 C 1.46848 * 111.00155 * 294.21472 * 13 12 9 27 27 H 0.97002 * 120.00768 * 359.97438 * 1 2 3 28 28 H 0.96706 * 113.99477 * 59.99523 * 11 9 7 29 29 H 1.09000 * 109.46417 * 60.00503 * 12 9 7 30 30 H 1.08996 * 109.47377 * 300.00518 * 12 9 7 31 31 H 1.08999 * 109.46031 * 65.82855 * 14 13 12 32 32 H 1.08999 * 109.45583 * 305.85142 * 14 13 12 33 33 H 1.09000 * 109.50416 * 180.88525 * 15 14 13 34 34 H 1.08994 * 109.50632 * 60.76201 * 15 14 13 35 35 H 1.08994 * 109.52681 * 297.68245 * 16 15 14 36 36 H 1.08997 * 110.36853 * 136.06698 * 22 20 19 37 37 H 1.08996 * 110.37780 * 258.29126 * 22 20 19 38 38 H 1.09002 * 110.96947 * 91.91892 * 23 22 20 39 39 H 1.09004 * 110.97112 * 215.64412 * 23 22 20 40 40 H 1.09003 * 110.32038 * 43.74249 * 24 19 18 41 41 H 1.09005 * 110.31704 * 281.54815 * 24 19 18 42 42 H 1.09002 * 109.50188 * 62.27991 * 25 16 15 43 43 H 1.08995 * 109.50855 * 182.40161 * 25 16 15 44 44 H 1.09003 * 109.46289 * 294.17400 * 26 13 12 45 45 H 1.09000 * 109.46179 * 54.15363 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1671 12 6 2.2454 -3.6620 -0.0018 13 7 1.5109 -4.9342 -0.0012 14 6 2.4168 -6.0649 -0.2404 15 6 1.6018 -7.3530 -0.3779 16 6 0.7976 -7.5816 0.9049 17 6 -0.0529 -8.8164 0.7527 18 7 -0.9615 -8.9769 -0.1393 19 6 -1.6359 -10.1289 -0.1419 20 6 -1.2445 -10.9708 0.8225 21 16 0.0482 -10.2011 1.7468 22 6 -2.0423 -12.2602 0.7716 23 6 -2.6819 -12.2730 -0.6326 24 6 -2.7564 -10.7677 -0.9577 25 6 -0.1022 -6.3686 1.1570 26 6 0.7622 -5.1091 1.2499 27 1 -0.4851 0.8400 0.0004 28 1 0.9210 -2.5290 -1.9984 29 1 2.8726 -3.6046 0.8878 30 1 2.8714 -3.6039 -0.8922 31 1 3.1078 -6.1601 0.5972 32 1 2.9795 -5.8916 -1.1577 33 1 2.2756 -8.1944 -0.5397 34 1 0.9202 -7.2638 -1.2237 35 1 1.4802 -7.7108 1.7447 36 1 -1.3832 -13.1193 0.8962 37 1 -2.8137 -12.2599 1.5417 38 1 -2.0449 -12.7950 -1.3466 39 1 -3.6773 -12.7165 -0.6039 40 1 -2.5916 -10.6014 -2.0223 41 1 -3.7225 -10.3631 -0.6557 42 1 -0.8106 -6.2639 0.3352 43 1 -0.6459 -6.5066 2.0915 44 1 1.4611 -5.2087 2.0805 45 1 0.1232 -4.2416 1.4150 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932620236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:24 Heat of formation + Delta-G solvation = -7.170242 kcal Electronic energy + Delta-G solvation = -24749.557662 eV Core-core repulsion = 21279.197925 eV Total energy + Delta-G solvation = -3470.359737 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.53019 -38.82699 -36.57427 -35.39156 -33.06327 -32.01585 -30.61985 -28.93726 -28.69605 -27.54409 -25.61837 -23.91159 -22.98087 -22.28868 -21.28183 -20.31947 -19.80304 -18.31172 -18.11311 -16.98088 -16.19584 -15.37851 -14.83026 -14.65536 -14.59943 -14.32964 -14.28950 -14.20154 -13.70970 -13.53452 -13.35962 -13.16927 -12.96672 -12.71843 -12.45320 -12.17628 -11.82133 -11.56695 -11.39860 -11.33850 -11.21276 -10.94302 -10.88586 -10.88287 -10.79376 -10.60376 -10.43254 -10.19478 -9.97989 -9.43765 -9.30610 -8.91518 -8.63195 -8.51634 -8.03714 -7.56426 -5.96114 -4.14549 0.64296 1.09830 1.68749 2.67391 3.31026 3.36469 3.37916 3.58059 4.22173 4.33885 4.40442 4.52562 4.60240 4.74975 4.93028 4.97715 5.11543 5.25043 5.31091 5.32027 5.33122 5.44011 5.47335 5.53377 5.62418 5.70824 5.73036 5.77239 5.82745 5.88103 5.95988 6.09374 6.11016 6.20198 6.33483 6.40004 6.50480 6.56113 6.69401 6.87142 7.61700 7.69207 7.71024 7.83026 7.93889 8.25355 8.89332 9.51628 9.68585 11.07866 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.030540 B = 0.002405 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.624584 B =11640.384890 C =12007.088232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.575 4.575 8 H 0.053 0.947 9 C 0.237 3.763 10 H 0.054 0.946 11 O -0.553 6.553 12 C 0.031 3.969 13 N -0.525 5.525 14 C 0.056 3.944 15 C -0.099 4.099 16 C -0.009 4.009 17 C 0.082 3.918 18 N -0.458 5.458 19 C 0.050 3.950 20 C -0.262 4.262 21 S 0.115 5.885 22 C -0.036 4.036 23 C -0.115 4.115 24 C -0.041 4.041 25 C -0.099 4.099 26 C 0.058 3.942 27 H 0.260 0.740 28 H 0.342 0.658 29 H 0.025 0.975 30 H 0.063 0.937 31 H 0.024 0.976 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.024 0.976 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 -25.629 2.237 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.613 4.613 8 H 0.072 0.928 9 C 0.179 3.821 10 H 0.072 0.928 11 O -0.355 6.355 12 C -0.096 4.096 13 N -0.250 5.250 14 C -0.072 4.072 15 C -0.138 4.138 16 C -0.032 4.032 17 C -0.198 4.198 18 N -0.170 5.170 19 C -0.080 4.080 20 C -0.382 4.382 21 S 0.374 5.626 22 C -0.076 4.076 23 C -0.155 4.155 24 C -0.081 4.081 25 C -0.139 4.139 26 C -0.070 4.070 27 H 0.070 0.930 28 H 0.185 0.815 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.080 0.920 44 H 0.042 0.958 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.228 -25.413 2.843 25.669 hybrid contribution 1.071 0.857 -0.144 1.379 sum -1.158 -24.556 2.699 24.731 Atomic orbital electron populations 1.70067 1.05883 1.26459 1.46965 1.25017 0.94673 0.99012 0.93924 0.86751 0.79720 0.83326 0.78626 1.20163 1.21222 1.20264 1.21628 0.93076 0.91693 1.54925 0.92846 1.19318 0.87782 0.88473 0.86548 0.92831 1.86567 1.37655 1.96294 1.14938 1.23068 0.97236 0.89821 0.99461 1.61915 1.26941 1.01745 1.34377 1.22061 0.93870 0.90959 1.00348 1.21583 0.98537 0.96744 0.96981 1.20029 0.94747 0.88710 0.99706 1.26930 0.98621 0.99927 0.94322 1.65314 1.06929 1.21643 1.23102 1.21670 0.99337 0.88776 0.98227 1.26942 1.03958 1.04626 1.02696 1.83718 1.33108 1.11563 1.34243 1.20618 0.96938 0.91846 0.98157 1.22351 1.01671 0.95512 0.95939 1.20855 0.94513 0.93359 0.99391 1.21605 0.97855 0.91945 1.02485 1.22078 0.96739 0.98133 0.90040 0.92966 0.81487 0.95679 0.91850 0.95740 0.90785 0.92127 0.89794 0.89817 0.90631 0.89947 0.90420 0.89557 0.89910 0.89523 0.89648 0.91983 0.95784 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.61 12.84 55.43 0.71 -24.89 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.57 -15.83 8.76 -34.44 -0.30 -16.13 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.24 6.03 2.70 -27.88 -0.08 5.95 16 10 H 0.05 1.49 6.43 -51.93 -0.33 1.16 16 11 O -0.55 -14.64 12.59 -35.23 -0.44 -15.09 16 12 C 0.03 0.65 4.56 -3.83 -0.02 0.64 16 13 N -0.53 -9.62 4.52 -234.67 -1.06 -10.68 16 14 C 0.06 0.84 5.46 -3.83 -0.02 0.82 16 15 C -0.10 -1.34 5.36 -26.65 -0.14 -1.49 16 16 C -0.01 -0.12 2.69 -91.64 -0.25 -0.37 16 17 C 0.08 1.09 5.90 -13.74 -0.08 1.01 16 18 N -0.46 -6.74 10.52 -7.23 -0.08 -6.82 16 19 C 0.05 0.63 7.70 -82.45 -0.63 -0.01 16 20 C -0.26 -2.85 7.42 -35.34 -0.26 -3.11 16 21 S 0.11 1.26 23.17 -107.50 -2.49 -1.23 16 22 C -0.04 -0.26 6.80 -26.70 -0.18 -0.44 16 23 C -0.12 -0.70 7.12 -25.43 -0.18 -0.89 16 24 C -0.04 -0.36 6.80 -26.31 -0.18 -0.54 16 25 C -0.10 -1.50 5.35 -26.65 -0.14 -1.64 16 26 C 0.06 1.01 5.29 -3.83 -0.02 0.99 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.34 8.20 9.04 45.56 0.41 8.61 16 29 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 30 H 0.06 1.28 7.99 -51.93 -0.41 0.87 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 1.07 8.02 -51.93 -0.42 0.65 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 1.78 6.21 -51.93 -0.32 1.46 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -32.02 369.50 -11.93 -43.95 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.53 Total: 5.99 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -2.58 Total: -13.06 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: -0.43 Total: -42.39 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.44 Total: -15.09 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.49 Total: -1.23 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.02 -11.93 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932620236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.779 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds