Wall clock time and date at job start Tue Mar 31 2020 13:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99871 * 2 1 4 4 H 1.48492 * 109.47603 * 240.00109 * 3 2 1 5 5 H 1.48501 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46839 * 120.00296 * 3 2 1 7 7 C 1.37876 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00476 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99718 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47375 * 300.00294 * 9 7 2 11 11 O 1.42907 * 109.47323 * 60.00217 * 9 7 2 12 12 C 1.53001 * 109.47208 * 179.97438 * 9 7 2 13 13 N 1.46895 * 109.47286 * 179.97438 * 12 9 7 14 14 C 1.46847 * 111.00100 * 170.00266 * 13 12 9 15 15 C 1.53038 * 109.52407 * 185.84143 * 14 13 12 16 16 C 1.53121 * 109.27633 * 300.82065 * 15 14 13 17 17 C 1.50706 * 109.52239 * 177.56142 * 16 15 14 18 18 N 1.28337 * 124.89817 * 299.69335 * 17 16 15 19 19 C 1.33493 * 117.83559 * 180.28077 * 18 17 16 20 20 C 1.33872 * 113.17676 * 359.95764 * 19 18 17 21 21 S 1.70748 * 124.90732 * 120.00026 * 17 16 15 22 22 C 1.51714 * 110.88804 * 180.02562 * 20 19 18 23 23 C 1.54307 * 104.80676 * 17.23542 * 22 20 19 24 24 C 1.52612 * 137.15543 * 179.91026 * 19 18 17 25 25 C 1.53118 * 109.16410 * 57.65844 * 16 15 14 26 26 C 1.46848 * 111.00155 * 294.21472 * 13 12 9 27 27 H 0.97002 * 120.00768 * 359.97438 * 1 2 3 28 28 H 0.96706 * 113.99477 * 59.99523 * 11 9 7 29 29 H 1.09000 * 109.46417 * 60.00503 * 12 9 7 30 30 H 1.08996 * 109.47377 * 300.00518 * 12 9 7 31 31 H 1.08999 * 109.46031 * 65.82855 * 14 13 12 32 32 H 1.08999 * 109.45583 * 305.85142 * 14 13 12 33 33 H 1.09000 * 109.50416 * 180.88525 * 15 14 13 34 34 H 1.08994 * 109.50632 * 60.76201 * 15 14 13 35 35 H 1.08994 * 109.52681 * 297.68245 * 16 15 14 36 36 H 1.08997 * 110.36853 * 136.06698 * 22 20 19 37 37 H 1.08996 * 110.37780 * 258.29126 * 22 20 19 38 38 H 1.09002 * 110.96947 * 91.91892 * 23 22 20 39 39 H 1.09004 * 110.97112 * 215.64412 * 23 22 20 40 40 H 1.09003 * 110.32038 * 43.74249 * 24 19 18 41 41 H 1.09005 * 110.31704 * 281.54815 * 24 19 18 42 42 H 1.09002 * 109.50188 * 62.27991 * 25 16 15 43 43 H 1.08995 * 109.50855 * 182.40161 * 25 16 15 44 44 H 1.09003 * 109.46289 * 294.17400 * 26 13 12 45 45 H 1.09000 * 109.46179 * 54.15363 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1671 12 6 2.2454 -3.6620 -0.0018 13 7 1.5109 -4.9342 -0.0012 14 6 2.4168 -6.0649 -0.2404 15 6 1.6018 -7.3530 -0.3779 16 6 0.7976 -7.5816 0.9049 17 6 -0.0529 -8.8164 0.7527 18 7 -0.9615 -8.9769 -0.1393 19 6 -1.6359 -10.1289 -0.1419 20 6 -1.2445 -10.9708 0.8225 21 16 0.0482 -10.2011 1.7468 22 6 -2.0423 -12.2602 0.7716 23 6 -2.6819 -12.2730 -0.6326 24 6 -2.7564 -10.7677 -0.9577 25 6 -0.1022 -6.3686 1.1570 26 6 0.7622 -5.1091 1.2499 27 1 -0.4851 0.8400 0.0004 28 1 0.9210 -2.5290 -1.9984 29 1 2.8726 -3.6046 0.8878 30 1 2.8714 -3.6039 -0.8922 31 1 3.1078 -6.1601 0.5972 32 1 2.9795 -5.8916 -1.1577 33 1 2.2756 -8.1944 -0.5397 34 1 0.9202 -7.2638 -1.2237 35 1 1.4802 -7.7108 1.7447 36 1 -1.3832 -13.1193 0.8962 37 1 -2.8137 -12.2599 1.5417 38 1 -2.0449 -12.7950 -1.3466 39 1 -3.6773 -12.7165 -0.6039 40 1 -2.5916 -10.6014 -2.0223 41 1 -3.7225 -10.3631 -0.6557 42 1 -0.8106 -6.2639 0.3352 43 1 -0.6459 -6.5066 2.0915 44 1 1.4611 -5.2087 2.0805 45 1 0.1232 -4.2416 1.4150 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932620236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:24 Heat of formation + Delta-G solvation = -29.141116 kcal Electronic energy + Delta-G solvation = -24750.510390 eV Core-core repulsion = 21279.197925 eV Total energy + Delta-G solvation = -3471.312465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40716 -40.10172 -37.85394 -36.85281 -34.45583 -34.15155 -31.88262 -30.43810 -29.38965 -28.79017 -27.03633 -25.43522 -24.28473 -23.40318 -22.14092 -21.77288 -21.09552 -19.32636 -19.04160 -18.92162 -16.91329 -16.69322 -16.65241 -16.42505 -16.03004 -15.77270 -15.36955 -15.23536 -14.98928 -14.86576 -14.56610 -14.34232 -14.03154 -13.85480 -13.70118 -13.15409 -13.12645 -12.99718 -12.81319 -12.71195 -12.48118 -12.18936 -12.16037 -12.11242 -12.06459 -11.95349 -11.92414 -11.59151 -11.47982 -10.91973 -10.66247 -10.38978 -10.17480 -10.06003 -9.47376 -9.04565 -8.11247 -6.37543 -0.24541 0.25329 0.79542 1.40944 1.42942 1.51019 1.75711 2.39354 2.76842 3.05036 3.14957 3.54159 3.60074 3.80518 3.81666 3.97688 4.12958 4.19388 4.27647 4.34964 4.35533 4.47325 4.51873 4.53017 4.57046 4.66765 4.71777 4.75281 4.76531 4.87544 4.87648 4.97252 4.98830 5.03306 5.10446 5.11770 5.18152 5.25514 5.28846 5.42850 5.62148 5.78340 6.04347 6.25336 6.37284 6.76425 6.81415 7.36670 7.65176 8.92993 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.030540 B = 0.002405 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.624584 B =11640.384890 C =12007.088232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.588 4.588 8 H 0.060 0.940 9 C 0.235 3.765 10 H 0.020 0.980 11 O -0.571 6.571 12 C 0.050 3.950 13 N -0.542 5.542 14 C 0.058 3.942 15 C -0.090 4.090 16 C -0.004 4.004 17 C 0.057 3.943 18 N -0.493 5.493 19 C 0.014 3.986 20 C -0.259 4.259 21 S 0.151 5.849 22 C -0.037 4.037 23 C -0.104 4.104 24 C -0.045 4.045 25 C -0.089 4.089 26 C 0.062 3.938 27 H 0.260 0.740 28 H 0.351 0.649 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.040 0.960 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.517 -27.869 2.769 28.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.626 4.626 8 H 0.079 0.921 9 C 0.178 3.822 10 H 0.038 0.962 11 O -0.374 6.374 12 C -0.078 4.078 13 N -0.267 5.267 14 C -0.070 4.070 15 C -0.129 4.129 16 C -0.026 4.026 17 C -0.222 4.222 18 N -0.207 5.207 19 C -0.116 4.116 20 C -0.379 4.379 21 S 0.410 5.590 22 C -0.077 4.077 23 C -0.143 4.143 24 C -0.085 4.085 25 C -0.128 4.128 26 C -0.066 4.066 27 H 0.069 0.931 28 H 0.195 0.805 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.935 -27.669 3.373 27.889 hybrid contribution 0.617 1.469 -0.299 1.621 sum -0.318 -26.199 3.074 26.381 Atomic orbital electron populations 1.70225 1.07736 1.27347 1.48453 1.25921 0.95468 1.02975 0.93452 0.85602 0.78322 0.78429 0.79138 1.19131 1.21155 1.19261 1.22039 0.93556 0.92785 1.54217 0.92149 1.19210 0.87848 0.90171 0.85010 0.96241 1.86517 1.38695 1.96472 1.15719 1.22655 0.95790 0.89477 0.99850 1.61815 1.27832 1.01967 1.35097 1.22131 0.93687 0.89944 1.01259 1.21482 0.98286 0.96827 0.96331 1.19947 0.94543 0.87936 1.00193 1.26808 0.99099 1.00965 0.95377 1.65305 1.07799 1.23326 1.24250 1.22258 1.00715 0.88659 0.99961 1.27571 1.03188 1.05712 1.01471 1.83470 1.32744 1.09874 1.32948 1.20834 0.97120 0.90452 0.99246 1.22381 1.03250 0.93439 0.95225 1.21030 0.93535 0.95129 0.98765 1.21435 0.97380 0.92172 1.01822 1.21984 0.96669 0.97674 0.90292 0.93072 0.80480 0.95424 0.91118 0.93984 0.90183 0.89702 0.92345 0.87642 0.88945 0.88536 0.89769 0.86917 0.90331 0.89263 0.92716 0.90867 0.94198 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.21 12.84 21.45 0.28 -54.94 16 2 C 0.02 1.37 5.40 84.66 0.46 1.83 16 3 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.59 -32.76 8.76 25.60 0.22 -32.53 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.24 12.39 2.70 29.85 0.08 12.47 16 10 H 0.02 1.17 6.43 -2.39 -0.02 1.15 16 11 O -0.57 -31.41 12.59 -148.98 -1.88 -33.29 16 12 C 0.05 2.09 4.56 86.30 0.39 2.49 16 13 N -0.54 -20.07 4.52 -896.36 -4.05 -24.13 16 14 C 0.06 1.64 5.46 86.33 0.47 2.12 16 15 C -0.09 -2.36 5.36 30.65 0.16 -2.20 16 16 C 0.00 -0.10 2.69 -11.46 -0.03 -0.13 16 17 C 0.06 1.48 5.90 88.62 0.52 2.00 16 18 N -0.49 -14.70 10.52 -176.79 -1.86 -16.56 16 19 C 0.01 0.34 7.70 41.93 0.32 0.66 16 20 C -0.26 -5.17 7.42 25.02 0.19 -4.99 16 21 S 0.15 3.05 23.17 -56.49 -1.31 1.74 16 22 C -0.04 -0.43 6.80 30.61 0.21 -0.22 16 23 C -0.10 -0.98 7.12 31.44 0.22 -0.76 16 24 C -0.04 -0.75 6.80 30.87 0.21 -0.54 16 25 C -0.09 -2.75 5.35 30.65 0.16 -2.58 16 26 C 0.06 2.20 5.29 86.33 0.46 2.66 16 27 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 28 H 0.35 17.35 9.04 -74.05 -0.67 16.68 16 29 H 0.03 1.13 8.12 -2.39 -0.02 1.11 16 30 H 0.07 2.82 7.99 -2.39 -0.02 2.80 16 31 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 2.19 8.02 -2.39 -0.02 2.17 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.11 2.23 8.12 -2.39 -0.02 2.21 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 2.26 6.21 -2.39 -0.01 2.24 16 Total: -1.00 -71.39 369.50 -2.43 -73.81 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.32 Total: 27.17 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 4.05 Total: -19.72 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -5.64 Total: -95.63 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -1.88 Total: -33.29 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.31 Total: 1.74 kcal Total: -71.39 -2.43 -73.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932620236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.671 kcal (2) G-P(sol) polarization free energy of solvation -71.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds