Wall clock time and date at job start Tue Mar 31 2020 13:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00344 * 2 1 4 4 H 1.48503 * 109.46796 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47212 * 119.99777 * 3 2 1 6 6 H 1.48498 * 109.47212 * 240.00180 * 3 2 1 7 7 C 1.37879 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00134 * 187.13091 * 7 2 1 9 9 C 1.50696 * 119.99802 * 7.13436 * 7 2 1 10 10 C 1.53002 * 115.55193 * 275.21021 * 9 7 2 11 11 N 1.46505 * 109.47002 * 297.93943 * 10 9 7 12 12 C 1.34775 * 119.99989 * 184.66830 * 11 10 9 13 13 O 1.21515 * 120.00188 * 359.97438 * 12 11 10 14 14 C 1.48177 * 119.99960 * 180.02562 * 12 11 10 15 15 C 1.39096 * 119.66914 * 180.02562 * 14 12 11 16 16 C 1.39724 * 118.92021 * 179.97438 * 15 14 12 17 17 C 1.48369 * 120.87451 * 179.97438 * 16 15 14 18 18 C 1.39348 * 120.12249 * 359.72556 * 17 16 15 19 19 C 1.38014 * 119.87831 * 179.79152 * 18 17 16 20 20 C 1.38331 * 120.12062 * 0.48512 * 19 18 17 21 21 C 1.38331 * 120.24489 * 359.74204 * 20 19 18 22 22 C 1.38015 * 120.11796 * 0.02711 * 21 20 19 23 23 C 1.39736 * 118.25264 * 359.97438 * 16 15 14 24 24 C 1.38318 * 119.21473 * 0.02562 * 23 16 15 25 25 N 1.31578 * 121.02732 * 359.73683 * 24 23 16 26 26 C 1.53008 * 117.49853 * 129.54157 * 9 7 2 27 27 C 1.53000 * 117.50221 * 60.88313 * 9 7 2 28 28 H 0.97004 * 120.00131 * 175.40177 * 1 2 3 29 29 H 1.08996 * 109.47248 * 57.93926 * 10 9 7 30 30 H 1.08998 * 109.47484 * 177.94245 * 10 9 7 31 31 H 0.97003 * 120.00045 * 4.67435 * 11 10 9 32 32 H 1.08005 * 120.54271 * 359.97438 * 15 14 12 33 33 H 1.08009 * 120.06301 * 359.97438 * 18 17 16 34 34 H 1.08000 * 119.94382 * 180.25115 * 19 18 17 35 35 H 1.07999 * 119.87744 * 179.76733 * 20 19 18 36 36 H 1.07991 * 119.93632 * 180.02562 * 21 20 19 37 37 H 1.08002 * 120.05643 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.38942 * 179.97438 * 23 16 15 39 39 H 1.08001 * 119.48594 * 180.02562 * 24 23 16 40 40 H 1.08998 * 117.49575 * 0.02562 * 26 9 7 41 41 H 1.08997 * 117.50012 * 145.01699 * 26 9 7 42 42 H 1.09003 * 117.50343 * 214.97736 * 27 9 7 43 43 H 1.08997 * 117.49643 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0783 -1.1977 0.1166 9 6 1.2597 -2.4941 -0.1610 10 6 0.6775 -3.0853 1.1246 11 7 1.7650 -3.3915 2.0574 12 6 1.4975 -4.0104 3.2244 13 8 0.3544 -4.3140 3.5031 14 6 2.5972 -4.3195 4.1681 15 6 2.3135 -4.9589 5.3704 16 6 3.3625 -5.2434 6.2484 17 6 3.1090 -5.9234 7.5425 18 6 1.8114 -6.2832 7.9011 19 6 1.5819 -6.9194 9.1041 20 6 2.6358 -7.1911 9.9579 21 6 3.9254 -6.8320 9.6091 22 6 4.1669 -6.1996 8.4063 23 6 4.6566 -4.8707 5.8757 24 6 4.8536 -4.2380 4.6616 25 7 3.8443 -3.9885 3.8551 26 6 1.7685 -3.4728 -1.2214 27 6 0.4684 -2.6991 -1.4543 28 1 -0.4850 -0.8374 -0.0673 29 1 -0.0008 -2.3646 1.5812 30 1 0.1322 -3.9993 0.8898 31 1 2.6774 -3.1487 1.8351 32 1 1.2988 -5.2310 5.6212 33 1 0.9870 -6.0671 7.2374 34 1 0.5771 -7.2023 9.3813 35 1 2.4513 -7.6857 10.9000 36 1 4.7446 -7.0469 10.2792 37 1 5.1742 -5.9201 8.1349 38 1 5.4929 -5.0735 6.5283 39 1 5.8521 -3.9484 4.3689 40 1 2.6422 -3.1764 -1.8019 41 1 1.6882 -4.5377 -1.0033 42 1 -0.4668 -3.2553 -1.3895 43 1 0.4862 -1.8934 -2.1882 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935782628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:17 Heat of formation + Delta-G solvation = 41.575907 kcal Electronic energy + Delta-G solvation = -25337.387828 eV Core-core repulsion = 21733.697931 eV Total energy + Delta-G solvation = -3603.689896 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73118 -39.34222 -38.47314 -36.92545 -34.09844 -33.26425 -31.91625 -31.85598 -30.99685 -29.85216 -26.77748 -24.97543 -24.51007 -24.08699 -22.33165 -21.89215 -21.33462 -19.94989 -19.63458 -18.14412 -17.19522 -16.74237 -16.38843 -15.93244 -15.46143 -15.17888 -14.99969 -14.66540 -14.44756 -14.14941 -13.87145 -13.74458 -13.63420 -13.43993 -13.18024 -12.96668 -12.74668 -12.34408 -12.22278 -11.73008 -11.61654 -11.19679 -10.94033 -10.79852 -10.62029 -10.48282 -10.13135 -10.06160 -9.71272 -9.39821 -9.31119 -9.28710 -8.69365 -8.66399 -8.47480 -8.39543 -8.20274 -6.38033 -4.13543 0.27322 0.74261 1.05394 1.60513 2.98428 3.42797 3.43451 3.51682 3.54846 3.62446 4.01622 4.11032 4.28787 4.42784 4.49530 4.61093 4.68654 4.82468 4.84493 4.90973 5.05280 5.12403 5.23303 5.29958 5.42119 5.43256 5.57453 5.72189 5.76111 5.80687 5.84909 6.10769 6.15032 6.15984 6.24481 6.29216 6.36635 6.45095 6.55137 6.60245 6.64784 6.85789 7.09833 7.18769 7.24822 7.70815 8.18737 8.23227 8.37008 8.71932 8.83498 9.62323 11.01362 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019349 B = 0.002626 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.771560 B =10661.202366 C =11074.298867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.029 3.971 3 Si 1.066 2.934 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.576 4.576 8 H 0.055 0.945 9 C 0.005 3.995 10 C 0.155 3.845 11 N -0.674 5.674 12 C 0.556 3.444 13 O -0.552 6.552 14 C 0.098 3.902 15 C -0.109 4.109 16 C -0.010 4.010 17 C -0.051 4.051 18 C -0.101 4.101 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.103 4.103 23 C -0.152 4.152 24 C 0.104 3.896 25 N -0.454 5.454 26 C -0.193 4.193 27 C -0.172 4.172 28 H 0.275 0.725 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.414 0.586 32 H 0.149 0.851 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.140 0.860 39 H 0.165 0.835 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.398 -13.591 17.178 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.894 3.106 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.613 4.613 8 H 0.073 0.927 9 C 0.004 3.996 10 C 0.032 3.968 11 N -0.321 5.321 12 C 0.339 3.661 13 O -0.431 6.431 14 C -0.041 4.041 15 C -0.130 4.130 16 C -0.018 4.018 17 C -0.051 4.051 18 C -0.120 4.120 19 C -0.136 4.136 20 C -0.133 4.133 21 C -0.139 4.139 22 C -0.122 4.122 23 C -0.172 4.172 24 C -0.055 4.055 25 N -0.166 5.166 26 C -0.230 4.230 27 C -0.210 4.210 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.251 0.749 32 H 0.167 0.833 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.158 0.842 39 H 0.182 0.818 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.483 -11.701 16.555 21.976 hybrid contribution 0.538 -1.967 0.623 2.132 sum 9.021 -13.667 17.178 23.733 Atomic orbital electron populations 1.70740 1.06820 1.31660 1.44232 1.25774 0.96510 1.02316 0.93132 0.83581 0.74962 0.75455 0.76554 1.20830 1.21419 1.21423 1.21196 0.94278 0.89589 1.56242 0.92724 1.19306 0.99089 0.95610 0.85586 1.21138 0.88140 0.97584 0.89972 1.45786 1.13271 1.55860 1.17222 1.17863 0.86959 0.79323 0.81924 1.90738 1.20859 1.55157 1.76308 1.21303 0.91649 0.97030 0.94074 1.22170 1.00671 0.97085 0.93065 1.19087 0.93246 0.96261 0.93215 1.18667 0.93958 0.99428 0.93035 1.21384 0.96235 0.97385 0.96951 1.21149 0.99463 0.98823 0.94152 1.21287 0.92893 0.99497 0.99589 1.21102 0.97143 0.99007 0.96641 1.21235 0.98587 0.98407 0.93938 1.22371 0.96907 0.99577 0.98386 1.22754 0.98176 0.94615 0.89935 1.67616 0.99158 1.16155 1.33667 1.22898 0.97905 0.95554 1.06643 1.22755 0.93350 1.02189 1.02676 0.91324 0.91526 0.93793 0.74885 0.83318 0.85165 0.85526 0.85854 0.85674 0.85506 0.84235 0.81826 0.89966 0.91406 0.91271 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.57 55.43 0.75 -25.48 16 2 C 0.03 0.80 5.39 -17.82 -0.10 0.71 16 3 Si 1.07 24.62 29.91 -169.99 -5.08 19.53 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.58 -15.28 8.44 -34.44 -0.29 -15.57 16 8 H 0.05 1.45 7.82 -52.49 -0.41 1.04 16 9 C 0.00 0.12 0.99 -155.66 -0.15 -0.04 16 10 C 0.15 3.58 5.43 -4.04 -0.02 3.56 16 11 N -0.67 -14.28 5.45 -61.14 -0.33 -14.62 16 12 C 0.56 11.30 7.81 -12.18 -0.10 11.20 16 13 O -0.55 -12.36 16.32 5.35 0.09 -12.27 16 14 C 0.10 1.65 6.75 -83.06 -0.56 1.09 16 15 C -0.11 -1.57 9.02 -38.71 -0.35 -1.92 16 16 C -0.01 -0.12 5.91 -104.61 -0.62 -0.74 16 17 C -0.05 -0.53 5.88 -104.90 -0.62 -1.14 16 18 C -0.10 -1.01 9.45 -39.25 -0.37 -1.38 16 19 C -0.12 -0.98 10.03 -39.63 -0.40 -1.37 16 20 C -0.11 -0.84 10.04 -39.51 -0.40 -1.24 16 21 C -0.12 -0.88 10.03 -39.63 -0.40 -1.28 16 22 C -0.10 -0.87 9.45 -39.25 -0.37 -1.24 16 23 C -0.15 -1.55 9.51 -38.99 -0.37 -1.92 16 24 C 0.10 1.22 11.17 -17.63 -0.20 1.02 16 25 N -0.45 -7.10 9.53 -9.88 -0.09 -7.20 16 26 C -0.19 -4.08 9.96 -26.69 -0.27 -4.35 16 27 C -0.17 -3.87 8.74 -26.69 -0.23 -4.10 16 28 H 0.28 7.96 6.19 -40.82 -0.25 7.71 16 29 H 0.07 1.72 7.82 -51.93 -0.41 1.31 16 30 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 31 H 0.41 8.63 7.55 -40.82 -0.31 8.33 16 32 H 0.15 2.07 5.92 -52.48 -0.31 1.76 16 33 H 0.13 1.26 6.30 -52.48 -0.33 0.93 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.13 0.80 6.29 -52.49 -0.33 0.47 16 38 H 0.14 0.93 6.33 -52.49 -0.33 0.60 16 39 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 40 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 43 H 0.09 2.08 8.14 -51.93 -0.42 1.65 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -31.89 367.19 -10.22 -42.11 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -5.28 Total: 11.10 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -5.80 Total: -18.72 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.33 Total: -47.29 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.08 Total: 19.53 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.89 -10.22 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935782628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.688 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds