Wall clock time and date at job start Tue Mar 31 2020 13:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48500 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47381 * 300.00052 * 3 2 1 6 6 H 1.48497 * 109.47148 * 60.00312 * 3 2 1 7 7 C 1.38819 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99830 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99868 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64836 * 359.97162 * 9 7 2 11 11 C 1.54908 * 104.82918 * 155.91458 * 10 9 7 12 12 H 1.09004 * 111.03016 * 278.91743 * 11 10 9 13 13 O 1.42895 * 111.00323 * 155.08792 * 11 10 9 14 14 C 1.55147 * 101.58511 * 37.00297 * 11 10 9 15 15 H 1.09005 * 110.71855 * 83.04237 * 14 11 10 16 16 C 1.52997 * 110.72384 * 206.13397 * 14 11 10 17 17 N 1.46499 * 109.47551 * 185.00614 * 16 14 11 18 18 C 1.34777 * 120.00199 * 180.02562 * 17 16 14 19 19 O 1.21553 * 119.99924 * 359.97438 * 18 17 16 20 20 C 1.47850 * 119.99831 * 180.27510 * 18 17 16 21 21 C 1.39575 * 120.14449 * 359.43991 * 20 18 17 22 22 C 1.37959 * 119.85210 * 179.79029 * 21 20 18 23 23 C 1.38362 * 120.14127 * 0.49494 * 22 21 20 24 24 C 1.50702 * 119.85104 * 179.76578 * 23 22 21 25 25 F 1.39902 * 109.46899 * 269.97524 * 24 23 22 26 26 C 1.38361 * 120.29615 * 359.73603 * 23 22 21 27 27 C 1.37950 * 120.14138 * 0.03052 * 26 23 22 28 28 C 1.47020 * 125.64611 * 180.02562 * 9 7 2 29 29 H 0.96993 * 120.00379 * 359.97438 * 1 2 3 30 30 H 1.08997 * 110.36615 * 37.06797 * 10 9 7 31 31 H 1.09004 * 110.36209 * 274.74512 * 10 9 7 32 32 H 0.96698 * 114.00592 * 67.79466 * 13 11 10 33 33 H 1.08998 * 109.47059 * 65.00375 * 16 14 11 34 34 H 1.08997 * 109.47280 * 305.00445 * 16 14 11 35 35 H 0.97001 * 120.00074 * 359.97438 * 17 16 14 36 36 H 1.07998 * 120.07254 * 0.02562 * 21 20 18 37 37 H 1.07998 * 119.93004 * 180.23392 * 22 21 20 38 38 H 1.08997 * 109.47076 * 29.97227 * 24 23 22 39 39 H 1.08998 * 109.47101 * 149.97555 * 24 23 22 40 40 H 1.08001 * 119.92818 * 179.97438 * 26 23 22 41 41 H 1.08007 * 120.07407 * 179.97438 * 27 26 23 42 42 H 1.09008 * 109.88127 * 61.60321 * 28 9 7 43 43 H 1.08997 * 109.88172 * 300.44091 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1415 -2.5332 -0.0017 11 6 -0.4015 -3.9322 -0.6141 12 1 -0.3522 -3.8980 -1.7025 13 8 -1.6566 -4.4573 -0.1772 14 6 0.7785 -4.7524 -0.0295 15 1 0.5448 -5.1011 0.9765 16 6 1.1233 -5.9309 -0.9422 17 7 2.1569 -6.7533 -0.3085 18 6 2.6206 -7.8533 -0.9343 19 8 2.1808 -8.1632 -2.0243 20 6 3.6594 -8.6866 -0.2921 21 6 4.1704 -8.3305 0.9570 22 6 5.1364 -9.1148 1.5527 23 6 5.6061 -10.2465 0.9100 24 6 6.6652 -11.0957 1.5644 25 9 7.9311 -10.6381 1.1831 26 6 5.1072 -10.6025 -0.3304 27 6 4.1376 -9.8295 -0.9349 28 6 1.9319 -3.7275 -0.0017 29 1 -0.4850 0.8400 0.0004 30 1 -0.5993 -1.7586 -0.6169 31 1 -0.5272 -2.4874 1.0168 32 1 -2.4239 -3.9769 -0.5172 33 1 1.4922 -5.5555 -1.8966 34 1 0.2310 -6.5341 -1.1094 35 1 2.5082 -6.5058 0.5611 36 1 3.8076 -7.4451 1.4577 37 1 5.5299 -8.8425 2.5209 38 1 6.5661 -11.0292 2.6478 39 1 6.5442 -12.1327 1.2514 40 1 5.4783 -11.4869 -0.8269 41 1 3.7492 -10.1082 -1.9035 42 1 2.5282 -3.8645 0.9004 43 1 2.5585 -3.8506 -0.8850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958737163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:52 Heat of formation + Delta-G solvation = -85.200142 kcal Electronic energy + Delta-G solvation = -26258.655043 eV Core-core repulsion = 22218.698500 eV Total energy + Delta-G solvation = -4039.956543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.02675 -40.39429 -38.84566 -38.07265 -35.22867 -34.74591 -32.95110 -32.17888 -31.35934 -29.77106 -27.80355 -27.11504 -25.49149 -23.73832 -23.09141 -22.41375 -20.78495 -20.20160 -19.83097 -18.18423 -17.10427 -16.82389 -16.71240 -16.45505 -16.23887 -15.77414 -15.42543 -15.15183 -14.93703 -14.63644 -14.26071 -14.08783 -13.87100 -13.72104 -13.23937 -13.08709 -13.00376 -12.62513 -12.43467 -11.99647 -11.74723 -11.60041 -11.50336 -11.32239 -11.28164 -11.00818 -10.86008 -10.65905 -10.14930 -10.07244 -9.90509 -9.70352 -9.39295 -9.35181 -9.19932 -8.98540 -8.74881 -6.95146 -5.75271 -3.17902 0.42870 0.99328 2.64212 3.09156 3.34669 3.40439 3.42824 3.55466 3.99065 4.20773 4.37445 4.44220 4.52877 4.58683 4.65852 4.71729 4.95210 5.01024 5.14669 5.18151 5.19140 5.38190 5.41081 5.46465 5.59365 5.62856 5.85219 5.89875 5.96711 5.99297 6.01920 6.04855 6.16341 6.30628 6.39999 6.46331 6.55255 6.76336 7.31473 7.45252 7.51206 7.70641 8.11994 8.13809 8.25051 9.11011 9.71790 10.34626 11.28888 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015590 B = 0.002529 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.624823 B =11068.114226 C =12361.057163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.917 3.083 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.128 3.872 11 C 0.081 3.919 12 H 0.061 0.939 13 O -0.569 6.569 14 C -0.105 4.105 15 H 0.086 0.914 16 C 0.133 3.867 17 N -0.717 5.717 18 C 0.554 3.446 19 O -0.538 6.538 20 C -0.119 4.119 21 C -0.087 4.087 22 C -0.104 4.104 23 C -0.118 4.118 24 C 0.105 3.895 25 F -0.210 7.210 26 C -0.106 4.106 27 C -0.063 4.063 28 C 0.141 3.859 29 H 0.253 0.747 30 H 0.110 0.890 31 H 0.022 0.978 32 H 0.377 0.623 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.401 0.599 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.132 0.868 41 H 0.140 0.860 42 H 0.024 0.976 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.300 -21.189 3.035 22.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.352 4.352 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.003 3.997 11 C 0.021 3.979 12 H 0.079 0.921 13 O -0.374 6.374 14 C -0.125 4.125 15 H 0.105 0.895 16 C 0.009 3.991 17 N -0.368 5.368 18 C 0.341 3.659 19 O -0.417 6.417 20 C -0.122 4.122 21 C -0.106 4.106 22 C -0.122 4.122 23 C -0.118 4.118 24 C 0.050 3.950 25 F -0.191 7.191 26 C -0.124 4.124 27 C -0.082 4.082 28 C 0.015 3.985 29 H 0.064 0.936 30 H 0.127 0.873 31 H 0.040 0.960 32 H 0.224 0.776 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.236 0.764 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.150 0.850 41 H 0.158 0.842 42 H 0.042 0.958 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 7.355 -21.568 2.551 22.930 hybrid contribution 0.315 1.489 0.256 1.543 sum 7.670 -20.079 2.807 21.677 Atomic orbital electron populations 1.69766 1.04960 1.24864 1.57541 1.24811 0.95773 0.97877 1.02174 0.85964 0.78679 0.83347 0.77301 1.20443 1.21649 1.21675 1.19138 0.90588 0.82226 1.43268 0.90206 1.44330 1.01617 0.99836 1.87059 1.22547 0.85340 0.92547 0.99281 1.23307 0.82138 0.95485 0.97001 0.92081 1.86362 1.15734 1.58947 1.76361 1.22412 0.96288 0.94150 0.99607 0.89544 1.21487 0.90261 0.91089 0.96230 1.45982 1.41461 1.26338 1.23065 1.18237 0.81824 0.80767 0.85115 1.90774 1.59246 1.71155 1.20488 1.20120 0.98902 0.97296 0.95866 1.21382 0.95895 0.99217 0.94068 1.21007 0.96778 0.94055 1.00344 1.20445 0.98310 0.97069 0.96014 1.20844 0.76944 0.97279 0.99943 1.92831 1.41947 1.91054 1.93240 1.21039 0.96750 1.00195 0.94428 1.21297 0.94535 0.92512 0.99817 1.21383 0.93280 0.85515 0.98339 0.93644 0.87286 0.95975 0.77578 0.91009 0.90942 0.76389 0.84975 0.84972 0.89604 0.89654 0.85036 0.84211 0.95778 0.95257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.21 10.09 55.49 0.56 -25.65 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.22 -6.09 10.27 -15.06 -0.15 -6.25 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -14.92 3.39 -170.07 -0.58 -15.50 16 10 C 0.13 3.01 5.62 -2.53 -0.01 3.00 16 11 C 0.08 1.51 3.88 -24.59 -0.10 1.41 16 12 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 13 O -0.57 -9.63 13.47 -35.23 -0.47 -10.11 16 14 C -0.11 -1.78 2.70 -88.79 -0.24 -2.02 16 15 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 16 C 0.13 2.01 5.02 -4.04 -0.02 1.99 16 17 N -0.72 -9.45 5.42 -61.25 -0.33 -9.78 16 18 C 0.55 7.84 7.77 -12.33 -0.10 7.74 16 19 O -0.54 -9.42 16.35 5.32 0.09 -9.33 16 20 C -0.12 -1.36 5.87 -104.97 -0.62 -1.97 16 21 C -0.09 -0.80 9.54 -39.19 -0.37 -1.18 16 22 C -0.10 -0.83 9.68 -39.64 -0.38 -1.22 16 23 C -0.12 -0.93 5.60 -104.53 -0.59 -1.51 16 24 C 0.10 0.61 7.67 36.01 0.28 0.89 16 25 F -0.21 -1.91 17.34 2.25 0.04 -1.88 16 26 C -0.11 -0.88 9.68 -39.64 -0.38 -1.26 16 27 C -0.06 -0.65 9.60 -39.19 -0.38 -1.03 16 28 C 0.14 2.78 6.75 -3.07 -0.02 2.76 16 29 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.11 2.85 5.87 -51.93 -0.31 2.54 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.38 4.95 9.12 45.56 0.42 5.36 16 33 H 0.07 1.17 7.93 -51.93 -0.41 0.75 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.40 4.39 6.50 -40.82 -0.27 4.12 16 36 H 0.13 1.00 6.41 -52.49 -0.34 0.66 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.09 0.33 8.08 -51.93 -0.42 -0.09 16 39 H 0.09 0.32 8.08 -51.93 -0.42 -0.10 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.14 1.45 7.65 -52.48 -0.40 1.04 16 42 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 43 H 0.03 0.58 7.68 -51.93 -0.40 0.18 16 LS Contribution 362.28 15.07 5.46 5.46 Total: -1.00 -33.60 362.28 -8.49 -42.08 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.04 Total: 7.12 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -3.18 Total: 0.95 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.35 Total: -50.93 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.39 Total: -19.44 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.60 -8.49 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958737163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.117 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds