Wall clock time and date at job start Tue Mar 31 2020 13:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48500 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47381 * 300.00052 * 3 2 1 6 6 H 1.48497 * 109.47148 * 60.00312 * 3 2 1 7 7 C 1.38819 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99830 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99868 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64836 * 359.97162 * 9 7 2 11 11 C 1.54908 * 104.82918 * 155.91458 * 10 9 7 12 12 H 1.09004 * 111.03016 * 278.91743 * 11 10 9 13 13 O 1.42895 * 111.00323 * 155.08792 * 11 10 9 14 14 C 1.55147 * 101.58511 * 37.00297 * 11 10 9 15 15 H 1.09005 * 110.71855 * 83.04237 * 14 11 10 16 16 C 1.52997 * 110.72384 * 206.13397 * 14 11 10 17 17 N 1.46499 * 109.47551 * 185.00614 * 16 14 11 18 18 C 1.34777 * 120.00199 * 180.02562 * 17 16 14 19 19 O 1.21553 * 119.99924 * 359.97438 * 18 17 16 20 20 C 1.47850 * 119.99831 * 180.27510 * 18 17 16 21 21 C 1.39575 * 120.14449 * 359.43991 * 20 18 17 22 22 C 1.37959 * 119.85210 * 179.79029 * 21 20 18 23 23 C 1.38362 * 120.14127 * 0.49494 * 22 21 20 24 24 C 1.50702 * 119.85104 * 179.76578 * 23 22 21 25 25 F 1.39902 * 109.46899 * 269.97524 * 24 23 22 26 26 C 1.38361 * 120.29615 * 359.73603 * 23 22 21 27 27 C 1.37950 * 120.14138 * 0.03052 * 26 23 22 28 28 C 1.47020 * 125.64611 * 180.02562 * 9 7 2 29 29 H 0.96993 * 120.00379 * 359.97438 * 1 2 3 30 30 H 1.08997 * 110.36615 * 37.06797 * 10 9 7 31 31 H 1.09004 * 110.36209 * 274.74512 * 10 9 7 32 32 H 0.96698 * 114.00592 * 67.79466 * 13 11 10 33 33 H 1.08998 * 109.47059 * 65.00375 * 16 14 11 34 34 H 1.08997 * 109.47280 * 305.00445 * 16 14 11 35 35 H 0.97001 * 120.00074 * 359.97438 * 17 16 14 36 36 H 1.07998 * 120.07254 * 0.02562 * 21 20 18 37 37 H 1.07998 * 119.93004 * 180.23392 * 22 21 20 38 38 H 1.08997 * 109.47076 * 29.97227 * 24 23 22 39 39 H 1.08998 * 109.47101 * 149.97555 * 24 23 22 40 40 H 1.08001 * 119.92818 * 179.97438 * 26 23 22 41 41 H 1.08007 * 120.07407 * 179.97438 * 27 26 23 42 42 H 1.09008 * 109.88127 * 61.60321 * 28 9 7 43 43 H 1.08997 * 109.88172 * 300.44091 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1415 -2.5332 -0.0017 11 6 -0.4015 -3.9322 -0.6141 12 1 -0.3522 -3.8980 -1.7025 13 8 -1.6566 -4.4573 -0.1772 14 6 0.7785 -4.7524 -0.0295 15 1 0.5448 -5.1011 0.9765 16 6 1.1233 -5.9309 -0.9422 17 7 2.1569 -6.7533 -0.3085 18 6 2.6206 -7.8533 -0.9343 19 8 2.1808 -8.1632 -2.0243 20 6 3.6594 -8.6866 -0.2921 21 6 4.1704 -8.3305 0.9570 22 6 5.1364 -9.1148 1.5527 23 6 5.6061 -10.2465 0.9100 24 6 6.6652 -11.0957 1.5644 25 9 7.9311 -10.6381 1.1831 26 6 5.1072 -10.6025 -0.3304 27 6 4.1376 -9.8295 -0.9349 28 6 1.9319 -3.7275 -0.0017 29 1 -0.4850 0.8400 0.0004 30 1 -0.5993 -1.7586 -0.6169 31 1 -0.5272 -2.4874 1.0168 32 1 -2.4239 -3.9769 -0.5172 33 1 1.4922 -5.5555 -1.8966 34 1 0.2310 -6.5341 -1.1094 35 1 2.5082 -6.5058 0.5611 36 1 3.8076 -7.4451 1.4577 37 1 5.5299 -8.8425 2.5209 38 1 6.5661 -11.0292 2.6478 39 1 6.5442 -12.1327 1.2514 40 1 5.4783 -11.4869 -0.8269 41 1 3.7492 -10.1082 -1.9035 42 1 2.5282 -3.8645 0.9004 43 1 2.5585 -3.8506 -0.8850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958737163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:51 Heat of formation + Delta-G solvation = -108.970719 kcal Electronic energy + Delta-G solvation = -26259.685813 eV Core-core repulsion = 22218.698500 eV Total energy + Delta-G solvation = -4040.987313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.58704 -41.36603 -40.03923 -39.29219 -36.67286 -36.21097 -34.21266 -33.40563 -32.10669 -31.32390 -29.37750 -28.06940 -27.05557 -25.20402 -23.77123 -23.34329 -22.30528 -21.54511 -21.12193 -19.25311 -18.85444 -18.27063 -17.50115 -17.22667 -17.00791 -16.77156 -16.65045 -16.46687 -15.96968 -15.72503 -15.53407 -15.31450 -14.95177 -14.77061 -14.47934 -14.43923 -14.10849 -13.92363 -13.67040 -13.53851 -13.25300 -13.11158 -12.79731 -12.44253 -12.31527 -12.28061 -12.10600 -11.92053 -11.86078 -11.82132 -11.44579 -11.12440 -10.81911 -10.75443 -10.31620 -10.03496 -9.94751 -8.93946 -7.81280 -5.26475 -0.32730 0.33268 1.47144 1.47540 1.57912 1.71992 2.01956 2.46490 2.75547 3.17973 3.29541 3.41542 3.57090 3.65077 3.71013 3.77213 3.89997 3.92343 4.08527 4.12888 4.14404 4.36038 4.40552 4.44174 4.53146 4.58539 4.65722 4.71901 4.82160 4.85927 4.94049 4.97793 5.17484 5.21523 5.27961 5.32946 5.39354 5.41798 5.47348 5.72571 5.80322 6.23487 6.41906 6.87255 7.06354 7.07584 7.72384 8.34816 9.20872 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015590 B = 0.002529 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.624823 B =11068.114226 C =12361.057163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.084 0.916 9 N -0.624 5.624 10 C 0.134 3.866 11 C 0.096 3.904 12 H 0.067 0.933 13 O -0.568 6.568 14 C -0.087 4.087 15 H 0.095 0.905 16 C 0.146 3.854 17 N -0.709 5.709 18 C 0.553 3.447 19 O -0.580 6.580 20 C -0.141 4.141 21 C -0.088 4.088 22 C -0.106 4.106 23 C -0.116 4.116 24 C 0.100 3.900 25 F -0.229 7.229 26 C -0.106 4.106 27 C -0.077 4.077 28 C 0.139 3.861 29 H 0.248 0.752 30 H 0.079 0.921 31 H -0.006 1.006 32 H 0.394 0.606 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.413 0.587 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.155 0.845 41 H 0.131 0.869 42 H 0.038 0.962 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.945 -22.775 4.229 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.809 3.191 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.102 0.898 9 N -0.351 5.351 10 C 0.008 3.992 11 C 0.035 3.965 12 H 0.085 0.915 13 O -0.375 6.375 14 C -0.107 4.107 15 H 0.114 0.886 16 C 0.022 3.978 17 N -0.361 5.361 18 C 0.342 3.658 19 O -0.461 6.461 20 C -0.144 4.144 21 C -0.107 4.107 22 C -0.123 4.123 23 C -0.116 4.116 24 C 0.046 3.954 25 F -0.210 7.210 26 C -0.124 4.124 27 C -0.096 4.096 28 C 0.014 3.986 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.012 0.988 32 H 0.244 0.756 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.250 0.750 36 H 0.165 0.835 37 H 0.176 0.824 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.172 0.828 41 H 0.148 0.852 42 H 0.056 0.944 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.013 -23.175 3.769 25.150 hybrid contribution -0.182 1.920 -0.076 1.930 sum 8.831 -21.255 3.694 23.311 Atomic orbital electron populations 1.70004 1.06208 1.25106 1.58561 1.25638 0.96668 1.01036 1.02566 0.84971 0.78157 0.79262 0.76705 1.19037 1.21862 1.21943 1.19501 0.91115 0.83474 1.42580 0.89783 1.44611 1.02373 1.01084 1.87034 1.22319 0.84828 0.94761 0.97315 1.22983 0.83566 0.92967 0.96947 0.91525 1.86337 1.15782 1.58875 1.76541 1.22234 0.94366 0.93723 1.00333 0.88648 1.21191 0.90796 0.90488 0.95348 1.45844 1.40900 1.25910 1.23449 1.18685 0.81836 0.80692 0.84586 1.90745 1.60827 1.72203 1.22350 1.19995 0.99417 0.97853 0.97177 1.21572 0.95977 0.99905 0.93216 1.21366 0.96032 0.93667 1.01275 1.20798 0.98177 0.97025 0.95645 1.21129 0.75073 0.97907 1.01308 1.92794 1.43290 1.91378 1.93533 1.21307 0.95870 1.00532 0.94709 1.21368 0.95493 0.92909 0.99841 1.21534 0.94247 0.83955 0.98843 0.94215 0.90319 0.98844 0.75608 0.92067 0.91016 0.74950 0.83515 0.82413 0.87111 0.87264 0.82763 0.85154 0.94391 0.95072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.27 10.09 21.65 0.22 -55.05 16 2 C -0.07 -3.70 5.49 84.86 0.47 -3.23 16 3 Si 0.98 44.79 29.55 68.60 2.03 46.82 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.24 -13.00 10.27 84.04 0.86 -12.13 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.62 -31.14 3.39 -691.98 -2.35 -33.49 16 10 C 0.13 6.39 5.62 86.85 0.49 6.88 16 11 C 0.10 3.54 3.88 31.98 0.12 3.66 16 12 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16 13 O -0.57 -18.58 13.47 -148.98 -2.01 -20.59 16 14 C -0.09 -2.86 2.70 -9.61 -0.03 -2.88 16 15 H 0.10 2.99 8.14 -2.38 -0.02 2.98 16 16 C 0.15 4.28 5.02 86.38 0.43 4.72 16 17 N -0.71 -17.91 5.42 -465.98 -2.53 -20.44 16 18 C 0.55 15.50 7.77 86.79 0.67 16.18 16 19 O -0.58 -20.62 16.35 -3.88 -0.06 -20.69 16 20 C -0.14 -3.12 5.87 -20.09 -0.12 -3.24 16 21 C -0.09 -1.45 9.54 22.53 0.21 -1.24 16 22 C -0.11 -1.39 9.68 22.23 0.22 -1.17 16 23 C -0.12 -1.49 5.60 -19.80 -0.11 -1.60 16 24 C 0.10 0.82 7.67 71.24 0.55 1.37 16 25 F -0.23 -3.58 17.34 44.97 0.78 -2.80 16 26 C -0.11 -1.56 9.68 22.23 0.22 -1.34 16 27 C -0.08 -1.56 9.60 22.52 0.22 -1.34 16 28 C 0.14 5.37 6.75 86.73 0.59 5.96 16 29 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 30 H 0.08 4.26 5.87 -2.39 -0.01 4.25 16 31 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.39 9.95 9.12 -74.06 -0.68 9.27 16 33 H 0.06 1.96 7.93 -2.39 -0.02 1.94 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.41 8.29 6.50 -92.71 -0.60 7.68 16 36 H 0.15 1.85 6.41 -2.91 -0.02 1.83 16 37 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 38 H 0.11 0.39 8.08 -2.39 -0.02 0.37 16 39 H 0.11 0.40 8.08 -2.39 -0.02 0.38 16 40 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.13 2.78 7.65 -2.91 -0.02 2.76 16 42 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.03 1.21 7.68 -2.39 -0.02 1.19 16 Total: -1.00 -73.90 362.28 0.64 -73.26 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -0.23 Total: 22.40 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 4.79 Total: 10.58 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -4.66 Total: -108.98 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -2.07 Total: -41.28 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.80 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -73.90 0.64 -73.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958737163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.709 kcal (2) G-P(sol) polarization free energy of solvation -73.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds