Wall clock time and date at job start Tue Mar 31 2020 13:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86811 * 119.99711 * 2 1 4 4 H 1.48502 * 109.46770 * 264.53356 * 3 2 1 5 5 H 1.48497 * 109.46874 * 24.53454 * 3 2 1 6 6 H 1.48493 * 109.46983 * 144.53806 * 3 2 1 7 7 C 1.38804 * 120.00434 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99810 * 337.61324 * 7 2 1 9 9 N 1.36936 * 120.00239 * 157.62141 * 7 2 1 10 10 C 1.47416 * 125.65046 * 341.46816 * 9 7 2 11 11 C 1.54904 * 104.83687 * 204.16694 * 10 9 7 12 12 H 1.08997 * 111.00728 * 204.91226 * 11 10 9 13 13 O 1.42902 * 111.00604 * 81.06563 * 11 10 9 14 14 C 1.55157 * 101.58337 * 322.99288 * 11 10 9 15 15 H 1.09006 * 110.86978 * 277.06732 * 14 11 10 16 16 C 1.52994 * 110.72480 * 153.86376 * 14 11 10 17 17 N 1.46504 * 109.47139 * 180.02562 * 16 14 11 18 18 C 1.34776 * 119.99978 * 180.02562 * 17 16 14 19 19 O 1.21556 * 119.99848 * 359.97438 * 18 17 16 20 20 C 1.47843 * 120.00307 * 180.02562 * 18 17 16 21 21 C 1.39574 * 120.14550 * 180.02562 * 20 18 17 22 22 C 1.37963 * 119.84868 * 180.02562 * 21 20 18 23 23 C 1.38358 * 120.14976 * 359.97438 * 22 21 20 24 24 C 1.50696 * 119.85730 * 180.02562 * 23 22 21 25 25 F 1.39895 * 109.47136 * 89.99697 * 24 23 22 26 26 C 1.38361 * 120.29031 * 359.97438 * 23 22 21 27 27 C 1.37961 * 120.14678 * 0.02562 * 26 23 22 28 28 C 1.47025 * 125.64640 * 161.51344 * 9 7 2 29 29 H 0.96998 * 120.00233 * 0.02562 * 1 2 3 30 30 H 1.09001 * 110.36963 * 323.00573 * 10 9 7 31 31 H 1.09003 * 110.36720 * 85.21429 * 10 9 7 32 32 H 0.96699 * 113.99800 * 67.80126 * 13 11 10 33 33 H 1.08997 * 109.47097 * 60.02060 * 16 14 11 34 34 H 1.09004 * 109.47108 * 300.02283 * 16 14 11 35 35 H 0.97000 * 120.00233 * 359.97438 * 17 16 14 36 36 H 1.07993 * 120.07532 * 0.27327 * 21 20 18 37 37 H 1.08004 * 119.92389 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.47138 * 210.00057 * 24 23 22 39 39 H 1.09007 * 109.46688 * 330.00042 * 24 23 22 40 40 H 1.07998 * 119.92821 * 180.02562 * 26 23 22 41 41 H 1.07996 * 120.07936 * 179.97438 * 27 26 23 42 42 H 1.08998 * 109.88330 * 59.49067 * 28 9 7 43 43 H 1.08991 * 109.88426 * 298.31785 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.6131 1.9798 -1.3938 5 1 1.3946 2.6833 0.5814 6 1 3.4852 1.4764 0.8122 7 6 2.0103 -1.2020 -0.0005 8 1 1.5313 -2.1024 0.3553 9 7 3.3023 -1.2464 -0.4520 10 6 3.9504 -0.2322 -1.3032 11 6 5.0950 -0.9896 -2.0213 12 1 5.8894 -0.3054 -2.3195 13 8 4.6001 -1.7181 -3.1466 14 6 5.5799 -1.9522 -0.9052 15 1 6.2744 -1.4486 -0.2327 16 6 6.2243 -3.2011 -1.5097 17 7 6.6709 -4.0897 -0.4339 18 6 7.2724 -5.2585 -0.7312 19 8 7.4441 -5.5756 -1.8921 20 6 7.7226 -6.1555 0.3544 21 6 8.3464 -7.3664 0.0498 22 6 8.7635 -8.1990 1.0677 23 6 8.5651 -7.8358 2.3880 24 6 9.0239 -8.7500 3.4946 25 9 10.3394 -8.4311 3.8478 26 6 7.9484 -6.6363 2.6967 27 6 7.5264 -5.7945 1.6884 28 6 4.2727 -2.3141 -0.1690 29 1 -0.4850 0.8400 -0.0004 30 1 3.2410 0.1617 -2.0310 31 1 4.3528 0.5754 -0.6915 32 1 4.2856 -1.1586 -3.8699 33 1 7.0799 -2.9098 -2.1190 34 1 5.4957 -3.7213 -2.1316 35 1 6.5342 -3.8365 0.4925 36 1 8.5057 -7.6490 -0.9802 37 1 9.2459 -9.1364 0.8335 38 1 8.3747 -8.6256 4.3613 39 1 8.9799 -9.7843 3.1531 40 1 7.7969 -6.3585 3.7293 41 1 7.0448 -4.8588 1.9306 42 1 3.8924 -3.2674 -0.5360 43 1 4.4557 -2.3738 0.9038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958737164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:55 Heat of formation + Delta-G solvation = -79.601197 kcal Electronic energy + Delta-G solvation = -26478.238877 eV Core-core repulsion = 22438.525123 eV Total energy + Delta-G solvation = -4039.713755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.04008 -40.41688 -39.03163 -38.30641 -35.16930 -34.78641 -32.94139 -32.19401 -31.39753 -30.29651 -28.22547 -27.36648 -25.74530 -23.63307 -23.09809 -22.40059 -21.19784 -20.35280 -19.82843 -18.21545 -17.56998 -16.76954 -16.65937 -16.34860 -16.23045 -15.80489 -15.60470 -15.25095 -15.07972 -14.69112 -14.48056 -14.17870 -13.95835 -13.83019 -13.58801 -13.21316 -12.97752 -12.85675 -12.64426 -12.20742 -11.94217 -11.74775 -11.51112 -11.39608 -11.31671 -11.13917 -10.87676 -10.69115 -10.47627 -10.26420 -9.98689 -9.56993 -9.44554 -9.39820 -9.35678 -9.00351 -8.71390 -7.08697 -5.98700 -3.28773 0.42284 0.98846 2.63373 3.06846 3.26159 3.40804 3.43338 3.54837 3.98474 4.20726 4.38130 4.44157 4.48598 4.52949 4.58337 4.68791 4.77044 4.94898 5.03427 5.06079 5.11038 5.15997 5.18043 5.37438 5.40742 5.54933 5.59060 5.67261 5.75756 5.86119 5.98273 6.01653 6.08939 6.11435 6.33534 6.37844 6.39772 6.46282 6.55163 6.70211 7.42413 7.63783 7.96820 8.12590 8.27126 8.78553 9.63899 10.11816 11.17562 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018990 B = 0.002580 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.141582 B =10850.679271 C =11740.219873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.021 3.979 3 Si 0.883 3.117 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.277 1.277 7 C -0.240 4.240 8 H 0.092 0.908 9 N -0.601 5.601 10 C 0.082 3.918 11 C 0.099 3.901 12 H 0.064 0.936 13 O -0.551 6.551 14 C -0.109 4.109 15 H 0.090 0.910 16 C 0.140 3.860 17 N -0.721 5.721 18 C 0.554 3.446 19 O -0.537 6.537 20 C -0.119 4.119 21 C -0.063 4.063 22 C -0.106 4.106 23 C -0.117 4.117 24 C 0.104 3.896 25 F -0.210 7.210 26 C -0.104 4.104 27 C -0.087 4.087 28 C 0.144 3.856 29 H 0.263 0.737 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.377 0.623 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.400 0.600 36 H 0.140 0.860 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.039 0.961 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.250 -12.983 3.857 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.178 4.178 3 Si 0.714 3.286 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.203 1.203 7 C -0.367 4.367 8 H 0.109 0.891 9 N -0.328 5.328 10 C -0.043 4.043 11 C 0.039 3.961 12 H 0.081 0.919 13 O -0.356 6.356 14 C -0.129 4.129 15 H 0.109 0.891 16 C 0.017 3.983 17 N -0.372 5.372 18 C 0.341 3.659 19 O -0.415 6.415 20 C -0.122 4.122 21 C -0.082 4.082 22 C -0.124 4.124 23 C -0.118 4.118 24 C 0.049 3.951 25 F -0.191 7.191 26 C -0.122 4.122 27 C -0.106 4.106 28 C 0.018 3.982 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.224 0.776 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.235 0.765 36 H 0.158 0.842 37 H 0.150 0.850 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.057 0.943 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 19.289 -13.604 3.447 23.854 hybrid contribution 0.133 1.829 0.277 1.855 sum 19.422 -11.775 3.724 23.016 Atomic orbital electron populations 1.69847 1.05526 1.26572 1.53190 1.24995 0.95157 0.97341 1.00278 0.86973 0.79187 0.84880 0.77571 1.21414 1.22968 1.20330 1.18634 0.84415 0.95438 1.38182 0.89068 1.44598 1.09936 1.21842 1.56416 1.22664 0.94555 0.92881 0.94222 1.22822 0.94814 0.92285 0.86216 0.91862 1.86462 1.84282 1.36976 1.27856 1.22562 0.97968 0.95468 0.96880 0.89141 1.21243 0.98983 0.89314 0.88792 1.46010 1.60158 1.20117 1.10917 1.18219 0.77954 0.81255 0.88459 1.90781 1.56141 1.74180 1.20376 1.20119 1.02296 0.96456 0.93350 1.21297 0.94393 0.92073 1.00402 1.21045 0.99603 1.00138 0.91620 1.20441 0.99899 0.96424 0.95033 1.20851 0.79320 0.98319 0.96563 1.92823 1.38415 1.94646 1.93260 1.21011 0.97976 0.93390 0.99798 1.21379 0.97906 0.99612 0.91673 1.21386 0.87352 0.93211 0.96227 0.92681 0.91829 0.95056 0.77589 0.91451 0.89677 0.76471 0.84214 0.85037 0.89543 0.89613 0.84965 0.84990 0.94297 0.95308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.81 13.97 55.49 0.78 -27.04 16 2 C 0.02 0.60 5.43 -17.43 -0.09 0.50 16 3 Si 0.88 22.02 24.27 -169.99 -4.13 17.89 16 4 H -0.29 -6.81 6.49 56.52 0.37 -6.44 16 5 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 6 H -0.28 -6.75 6.66 56.52 0.38 -6.37 16 7 C -0.24 -6.74 10.57 -15.06 -0.16 -6.90 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 9 N -0.60 -14.19 3.21 -170.08 -0.55 -14.74 16 10 C 0.08 1.70 4.43 -2.54 -0.01 1.69 16 11 C 0.10 1.58 4.17 -24.59 -0.10 1.48 16 12 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 13 O -0.55 -8.85 12.22 -35.23 -0.43 -9.28 16 14 C -0.11 -1.64 2.95 -88.79 -0.26 -1.90 16 15 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 16 C 0.14 1.99 4.59 -4.04 -0.02 1.98 16 17 N -0.72 -9.02 5.35 -61.25 -0.33 -9.35 16 18 C 0.55 7.64 7.77 -12.33 -0.10 7.55 16 19 O -0.54 -9.25 16.35 5.32 0.09 -9.16 16 20 C -0.12 -1.33 5.87 -104.97 -0.62 -1.95 16 21 C -0.06 -0.64 9.60 -39.18 -0.38 -1.02 16 22 C -0.11 -0.87 9.68 -39.64 -0.38 -1.25 16 23 C -0.12 -0.92 5.60 -104.53 -0.59 -1.50 16 24 C 0.10 0.61 7.67 36.00 0.28 0.88 16 25 F -0.21 -1.86 17.34 2.25 0.04 -1.82 16 26 C -0.10 -0.82 9.68 -39.64 -0.38 -1.21 16 27 C -0.09 -0.79 9.54 -39.18 -0.37 -1.16 16 28 C 0.14 2.72 6.52 -3.06 -0.02 2.70 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.06 1.40 6.63 -51.93 -0.34 1.06 16 31 H 0.03 0.66 5.57 -51.93 -0.29 0.38 16 32 H 0.38 4.63 9.12 45.56 0.42 5.04 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.44 7.44 -51.93 -0.39 1.06 16 35 H 0.40 4.09 6.36 -40.82 -0.26 3.83 16 36 H 0.14 1.43 7.65 -52.49 -0.40 1.02 16 37 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 38 H 0.09 0.34 8.08 -51.93 -0.42 -0.08 16 39 H 0.09 0.33 8.08 -51.93 -0.42 -0.09 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.13 0.96 6.40 -52.49 -0.34 0.62 16 42 H 0.04 0.78 7.76 -51.93 -0.40 0.38 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 355.18 15.07 5.35 5.35 Total: -1.00 -35.66 355.18 -7.38 -43.04 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.00 Total: 5.22 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -3.21 Total: -0.12 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.10 Total: -51.13 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.34 Total: -18.44 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.13 Total: 17.89 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.66 -7.38 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958737164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.556 kcal (2) G-P(sol) polarization free energy of solvation -35.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds