Wall clock time and date at job start Tue Mar 31 2020 13:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86811 * 119.99711 * 2 1 4 4 H 1.48502 * 109.46770 * 264.53356 * 3 2 1 5 5 H 1.48497 * 109.46874 * 24.53454 * 3 2 1 6 6 H 1.48493 * 109.46983 * 144.53806 * 3 2 1 7 7 C 1.38804 * 120.00434 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99810 * 337.61324 * 7 2 1 9 9 N 1.36936 * 120.00239 * 157.62141 * 7 2 1 10 10 C 1.47416 * 125.65046 * 341.46816 * 9 7 2 11 11 C 1.54904 * 104.83687 * 204.16694 * 10 9 7 12 12 H 1.08997 * 111.00728 * 204.91226 * 11 10 9 13 13 O 1.42902 * 111.00604 * 81.06563 * 11 10 9 14 14 C 1.55157 * 101.58337 * 322.99288 * 11 10 9 15 15 H 1.09006 * 110.86978 * 277.06732 * 14 11 10 16 16 C 1.52994 * 110.72480 * 153.86376 * 14 11 10 17 17 N 1.46504 * 109.47139 * 180.02562 * 16 14 11 18 18 C 1.34776 * 119.99978 * 180.02562 * 17 16 14 19 19 O 1.21556 * 119.99848 * 359.97438 * 18 17 16 20 20 C 1.47843 * 120.00307 * 180.02562 * 18 17 16 21 21 C 1.39574 * 120.14550 * 180.02562 * 20 18 17 22 22 C 1.37963 * 119.84868 * 180.02562 * 21 20 18 23 23 C 1.38358 * 120.14976 * 359.97438 * 22 21 20 24 24 C 1.50696 * 119.85730 * 180.02562 * 23 22 21 25 25 F 1.39895 * 109.47136 * 89.99697 * 24 23 22 26 26 C 1.38361 * 120.29031 * 359.97438 * 23 22 21 27 27 C 1.37961 * 120.14678 * 0.02562 * 26 23 22 28 28 C 1.47025 * 125.64640 * 161.51344 * 9 7 2 29 29 H 0.96998 * 120.00233 * 0.02562 * 1 2 3 30 30 H 1.09001 * 110.36963 * 323.00573 * 10 9 7 31 31 H 1.09003 * 110.36720 * 85.21429 * 10 9 7 32 32 H 0.96699 * 113.99800 * 67.80126 * 13 11 10 33 33 H 1.08997 * 109.47097 * 60.02060 * 16 14 11 34 34 H 1.09004 * 109.47108 * 300.02283 * 16 14 11 35 35 H 0.97000 * 120.00233 * 359.97438 * 17 16 14 36 36 H 1.07993 * 120.07532 * 0.27327 * 21 20 18 37 37 H 1.08004 * 119.92389 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.47138 * 210.00057 * 24 23 22 39 39 H 1.09007 * 109.46688 * 330.00042 * 24 23 22 40 40 H 1.07998 * 119.92821 * 180.02562 * 26 23 22 41 41 H 1.07996 * 120.07936 * 179.97438 * 27 26 23 42 42 H 1.08998 * 109.88330 * 59.49067 * 28 9 7 43 43 H 1.08991 * 109.88426 * 298.31785 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.6131 1.9798 -1.3938 5 1 1.3946 2.6833 0.5814 6 1 3.4852 1.4764 0.8122 7 6 2.0103 -1.2020 -0.0005 8 1 1.5313 -2.1024 0.3553 9 7 3.3023 -1.2464 -0.4520 10 6 3.9504 -0.2322 -1.3032 11 6 5.0950 -0.9896 -2.0213 12 1 5.8894 -0.3054 -2.3195 13 8 4.6001 -1.7181 -3.1466 14 6 5.5799 -1.9522 -0.9052 15 1 6.2744 -1.4486 -0.2327 16 6 6.2243 -3.2011 -1.5097 17 7 6.6709 -4.0897 -0.4339 18 6 7.2724 -5.2585 -0.7312 19 8 7.4441 -5.5756 -1.8921 20 6 7.7226 -6.1555 0.3544 21 6 8.3464 -7.3664 0.0498 22 6 8.7635 -8.1990 1.0677 23 6 8.5651 -7.8358 2.3880 24 6 9.0239 -8.7500 3.4946 25 9 10.3394 -8.4311 3.8478 26 6 7.9484 -6.6363 2.6967 27 6 7.5264 -5.7945 1.6884 28 6 4.2727 -2.3141 -0.1690 29 1 -0.4850 0.8400 -0.0004 30 1 3.2410 0.1617 -2.0310 31 1 4.3528 0.5754 -0.6915 32 1 4.2856 -1.1586 -3.8699 33 1 7.0799 -2.9098 -2.1190 34 1 5.4957 -3.7213 -2.1316 35 1 6.5342 -3.8365 0.4925 36 1 8.5057 -7.6490 -0.9802 37 1 9.2459 -9.1364 0.8335 38 1 8.3747 -8.6256 4.3613 39 1 8.9799 -9.7843 3.1531 40 1 7.7969 -6.3585 3.7293 41 1 7.0448 -4.8588 1.9306 42 1 3.8924 -3.2674 -0.5360 43 1 4.4557 -2.3738 0.9038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958737164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:54 Heat of formation + Delta-G solvation = -107.163492 kcal Electronic energy + Delta-G solvation = -26479.434068 eV Core-core repulsion = 22438.525123 eV Total energy + Delta-G solvation = -4040.908945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.59180 -41.36689 -40.23111 -39.33030 -36.47593 -36.21389 -34.24768 -33.50559 -32.20656 -31.68024 -29.71080 -28.27447 -27.14714 -25.05032 -23.77124 -23.33126 -22.72849 -21.41056 -21.11379 -19.29215 -19.09660 -18.04991 -17.51037 -17.37684 -17.12534 -16.78128 -16.64217 -16.43345 -16.04374 -15.90020 -15.62284 -15.32658 -15.12013 -15.06288 -14.64806 -14.41474 -14.28320 -13.95544 -13.87268 -13.52544 -13.42050 -13.19995 -12.81561 -12.34146 -12.32416 -12.21141 -12.13762 -12.07600 -11.85609 -11.82761 -11.50581 -11.07532 -10.98881 -10.68393 -10.28669 -10.03511 -9.93224 -9.04670 -8.18597 -5.45323 -0.32319 0.33165 1.28877 1.39030 1.48506 1.73118 2.05955 2.40782 2.76086 3.00444 3.15753 3.35205 3.41814 3.66906 3.69673 3.70986 3.80010 3.87118 3.92882 4.12098 4.13729 4.31483 4.35263 4.36357 4.53032 4.54872 4.65771 4.67148 4.76169 4.81392 4.86998 4.96197 4.97774 5.02577 5.18250 5.26764 5.28373 5.36121 5.39483 5.65139 5.80300 6.08540 6.43941 6.73600 6.91295 7.10622 7.52494 8.08125 9.01612 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018990 B = 0.002580 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.141582 B =10850.679271 C =11740.219873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.041 4.041 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.311 1.311 6 H -0.261 1.261 7 C -0.236 4.236 8 H 0.051 0.949 9 N -0.622 5.622 10 C 0.072 3.928 11 C 0.108 3.892 12 H 0.110 0.890 13 O -0.568 6.568 14 C -0.094 4.094 15 H 0.126 0.874 16 C 0.152 3.848 17 N -0.712 5.712 18 C 0.552 3.448 19 O -0.580 6.580 20 C -0.142 4.142 21 C -0.078 4.078 22 C -0.107 4.107 23 C -0.116 4.116 24 C 0.100 3.900 25 F -0.227 7.227 26 C -0.106 4.106 27 C -0.088 4.088 28 C 0.140 3.860 29 H 0.262 0.738 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.392 0.608 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.412 0.588 36 H 0.130 0.870 37 H 0.154 0.846 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.158 0.842 41 H 0.148 0.852 42 H 0.017 0.983 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.252 -12.505 5.002 26.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.235 4.235 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.240 1.240 6 H -0.186 1.186 7 C -0.364 4.364 8 H 0.069 0.931 9 N -0.349 5.349 10 C -0.053 4.053 11 C 0.048 3.952 12 H 0.128 0.872 13 O -0.375 6.375 14 C -0.113 4.113 15 H 0.144 0.856 16 C 0.028 3.972 17 N -0.364 5.364 18 C 0.341 3.659 19 O -0.462 6.462 20 C -0.145 4.145 21 C -0.097 4.097 22 C -0.125 4.125 23 C -0.117 4.117 24 C 0.046 3.954 25 F -0.209 7.209 26 C -0.124 4.124 27 C -0.106 4.106 28 C 0.015 3.985 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.242 0.758 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.250 0.750 36 H 0.148 0.852 37 H 0.172 0.828 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.175 0.825 41 H 0.166 0.834 42 H 0.036 0.964 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 22.336 -13.127 4.596 26.312 hybrid contribution -0.843 1.512 -0.060 1.732 sum 21.493 -11.615 4.536 24.848 Atomic orbital electron populations 1.69996 1.07479 1.27363 1.55832 1.25708 0.95840 1.01131 1.00861 0.85847 0.77907 0.79431 0.78679 1.19222 1.23953 1.18621 1.18531 0.86580 0.94142 1.37189 0.93149 1.44694 1.09318 1.23688 1.57154 1.22879 0.95595 0.92964 0.93830 1.22899 0.93890 0.92492 0.85948 0.87212 1.86454 1.84478 1.38130 1.28478 1.22550 0.96270 0.95775 0.96740 0.85595 1.20981 0.98397 0.88889 0.88930 1.45896 1.59523 1.19672 1.11261 1.18662 0.77214 0.81470 0.88547 1.90749 1.58049 1.75129 1.22248 1.20019 1.04249 0.96709 0.93484 1.21368 0.95152 0.92490 1.00689 1.21306 0.99100 1.00590 0.91457 1.20787 0.98817 0.96633 0.95450 1.21110 0.78552 0.98937 0.96794 1.92790 1.39863 1.94839 1.93376 1.21370 0.97173 0.93098 1.00753 1.21576 0.97688 1.00500 0.90880 1.21514 0.88383 0.91068 0.97545 0.92875 0.93735 0.94182 0.75788 0.90467 0.92852 0.74996 0.85205 0.82824 0.87231 0.87380 0.82452 0.83399 0.96437 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.88 13.97 21.65 0.30 -60.58 16 2 C -0.04 -2.42 5.43 84.86 0.46 -1.96 16 3 Si 0.95 45.35 24.27 68.60 1.66 47.02 16 4 H -0.27 -11.68 6.49 99.48 0.65 -11.04 16 5 H -0.31 -15.14 7.11 99.48 0.71 -14.43 16 6 H -0.26 -11.63 6.66 99.48 0.66 -10.96 16 7 C -0.24 -13.61 10.57 84.03 0.89 -12.73 16 8 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 9 N -0.62 -29.04 3.21 -692.01 -2.22 -31.26 16 10 C 0.07 2.80 4.43 86.85 0.38 3.18 16 11 C 0.11 3.08 4.17 31.98 0.13 3.22 16 12 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 13 O -0.57 -17.23 12.22 -148.98 -1.82 -19.05 16 14 C -0.09 -2.55 2.95 -9.61 -0.03 -2.57 16 15 H 0.13 2.60 8.14 -2.38 -0.02 2.58 16 16 C 0.15 4.09 4.59 86.38 0.40 4.49 16 17 N -0.71 -16.93 5.35 -465.97 -2.49 -19.43 16 18 C 0.55 15.17 7.77 86.79 0.67 15.85 16 19 O -0.58 -20.50 16.35 -3.89 -0.06 -20.56 16 20 C -0.14 -3.09 5.87 -20.09 -0.12 -3.21 16 21 C -0.08 -1.58 9.60 22.53 0.22 -1.36 16 22 C -0.11 -1.58 9.68 22.23 0.22 -1.36 16 23 C -0.12 -1.52 5.60 -19.81 -0.11 -1.63 16 24 C 0.10 0.85 7.67 71.23 0.55 1.39 16 25 F -0.23 -3.45 17.34 44.97 0.78 -2.67 16 26 C -0.11 -1.40 9.68 22.23 0.22 -1.18 16 27 C -0.09 -1.43 9.54 22.53 0.21 -1.21 16 28 C 0.14 5.14 6.52 86.73 0.57 5.70 16 29 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.04 1.88 6.63 -2.39 -0.02 1.87 16 31 H 0.04 1.52 5.57 -2.39 -0.01 1.51 16 32 H 0.39 8.90 9.12 -74.06 -0.68 8.22 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 1.81 7.44 -2.38 -0.02 1.79 16 35 H 0.41 7.58 6.36 -92.71 -0.59 6.99 16 36 H 0.13 2.78 7.65 -2.91 -0.02 2.76 16 37 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.11 0.45 8.08 -2.39 -0.02 0.43 16 39 H 0.11 0.45 8.08 -2.38 -0.02 0.43 16 40 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 41 H 0.15 1.78 6.40 -2.91 -0.02 1.77 16 42 H 0.02 0.71 7.76 -2.39 -0.02 0.70 16 43 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -81.35 355.18 0.49 -80.86 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -0.31 Total: 19.06 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 4.65 Total: 6.62 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -4.41 Total: -111.26 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -1.88 Total: -39.62 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.66 Total: 47.02 kcal Total: -81.35 0.49 -80.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958737164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.307 kcal (2) G-P(sol) polarization free energy of solvation -81.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds