Wall clock time and date at job start Tue Mar 31 2020 13:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00236 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00432 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00540 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.08002 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.47428 * 125.64853 * 359.69311 * 9 7 2 11 11 C 1.55124 * 104.72476 * 155.81740 * 10 9 7 12 12 H 1.08996 * 110.94068 * 155.29349 * 11 10 9 13 13 O 1.42901 * 111.19070 * 279.19309 * 11 10 9 14 14 C 1.55157 * 101.48449 * 37.29477 * 11 10 9 15 15 H 1.09000 * 110.72108 * 82.70100 * 14 11 10 16 16 C 1.53004 * 110.72063 * 205.96700 * 14 11 10 17 17 N 1.46496 * 109.47316 * 179.97438 * 16 14 11 18 18 C 1.34775 * 120.00289 * 180.02562 * 17 16 14 19 19 O 1.21557 * 119.99613 * 0.02562 * 18 17 16 20 20 C 1.47845 * 120.00399 * 180.02562 * 18 17 16 21 21 C 1.39573 * 120.13959 * 359.72831 * 20 18 17 22 22 C 1.37960 * 119.85223 * 179.74998 * 21 20 18 23 23 C 1.38363 * 120.14292 * 0.52216 * 22 21 20 24 24 C 1.50700 * 119.85584 * 179.72660 * 23 22 21 25 25 F 1.39902 * 109.46959 * 270.02352 * 24 23 22 26 26 C 1.38359 * 120.29222 * 359.74807 * 23 22 21 27 27 C 1.37962 * 120.14492 * 359.97438 * 26 23 22 28 28 C 1.47021 * 125.64976 * 179.97438 * 9 7 2 29 29 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 30 30 H 1.08997 * 110.36565 * 274.74986 * 10 9 7 31 31 H 1.09000 * 110.36274 * 37.06957 * 10 9 7 32 32 H 0.96698 * 114.00326 * 292.18245 * 13 11 10 33 33 H 1.09004 * 109.47302 * 299.98228 * 16 14 11 34 34 H 1.09006 * 109.46962 * 59.97841 * 16 14 11 35 35 H 0.97002 * 119.99703 * 0.02562 * 17 16 14 36 36 H 1.08000 * 120.08027 * 359.97438 * 21 20 18 37 37 H 1.08001 * 119.93371 * 180.27668 * 22 21 20 38 38 H 1.09003 * 109.46949 * 30.01881 * 24 23 22 39 39 H 1.08999 * 109.47174 * 150.02126 * 24 23 22 40 40 H 1.07995 * 119.92977 * 179.97438 * 26 23 22 41 41 H 1.07995 * 120.07377 * 179.97438 * 27 26 23 42 42 H 1.08998 * 109.88679 * 300.43948 * 28 9 7 43 43 H 1.09005 * 109.88137 * 61.45396 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4478 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0064 9 7 1.3255 -2.3880 -0.0113 10 6 -0.1416 -2.5332 -0.0050 11 6 -0.4023 -3.9294 -0.6286 12 1 -1.3594 -4.3317 -0.2966 13 8 -0.3386 -3.8780 -2.0552 14 6 0.7783 -4.7522 -0.0485 15 1 0.5467 -5.1025 0.9574 16 6 1.1221 -5.9270 -0.9665 17 7 2.2384 -6.6835 -0.3942 18 6 2.7160 -7.7687 -1.0352 19 8 2.2207 -8.1193 -2.0885 20 6 3.8422 -8.5325 -0.4574 21 6 4.4168 -8.1292 0.7489 22 6 5.4642 -8.8494 1.2853 23 6 5.9521 -9.9630 0.6247 24 6 7.1004 -10.7413 1.2135 25 9 8.3089 -10.2190 0.7404 26 6 5.3906 -10.3648 -0.5743 27 6 4.3391 -9.6568 -1.1187 28 6 1.9317 -3.7274 -0.0183 29 1 -0.4850 0.8401 0.0041 30 1 -0.5222 -2.4938 1.0156 31 1 -0.6023 -1.7546 -0.6129 32 1 -1.0562 -3.3742 -2.4631 33 1 0.2535 -6.5784 -1.0638 34 1 1.4049 -5.5494 -1.9492 35 1 2.6339 -6.4035 0.4461 36 1 4.0401 -7.2575 1.2632 37 1 5.9068 -8.5411 2.2210 38 1 7.0720 -10.6644 2.3004 39 1 7.0176 -11.7881 0.9210 40 1 5.7763 -11.2346 -1.0852 41 1 3.9020 -9.9712 -2.0549 42 1 2.5570 -3.8468 -0.9031 43 1 2.5315 -3.8676 0.8810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958737165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:57 Heat of formation + Delta-G solvation = -106.823681 kcal Electronic energy + Delta-G solvation = -26431.484128 eV Core-core repulsion = 22390.589918 eV Total energy + Delta-G solvation = -4040.894210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.58749 -41.35370 -40.04554 -39.28344 -36.35035 -36.17412 -34.13073 -33.38983 -32.10096 -31.29326 -29.48568 -28.05009 -27.05262 -25.23088 -23.76857 -23.35370 -22.22928 -21.40066 -21.03502 -19.23168 -19.02630 -18.02113 -17.49990 -17.14343 -16.84555 -16.77475 -16.61415 -16.42754 -15.91355 -15.83545 -15.61002 -15.32406 -15.03879 -14.73602 -14.47215 -14.43278 -14.03519 -13.88878 -13.70759 -13.47485 -13.18204 -13.02583 -12.66010 -12.35305 -12.28871 -12.11986 -12.02966 -11.87304 -11.83674 -11.82139 -11.66692 -11.05874 -10.81138 -10.65986 -10.28883 -10.03519 -9.93437 -8.86159 -7.79171 -5.21574 -0.32396 0.33144 1.45886 1.47302 1.55909 1.72905 2.06421 2.48442 2.75826 3.27404 3.34642 3.43052 3.59345 3.68891 3.72718 3.89104 3.90875 3.97031 3.99470 4.13309 4.14556 4.36111 4.42214 4.52984 4.59430 4.63375 4.66302 4.80746 4.82844 4.90054 4.97789 5.00256 5.18391 5.27675 5.30092 5.35750 5.39261 5.39820 5.50698 5.77411 5.80401 6.28948 6.44399 6.96017 7.09989 7.11362 7.77653 8.40231 9.22750 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.002596 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.209725 B =10782.820365 C =12098.091437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.065 4.065 3 Si 0.978 3.022 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.293 1.293 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.621 5.621 10 C 0.126 3.874 11 C 0.092 3.908 12 H 0.091 0.909 13 O -0.570 6.570 14 C -0.091 4.091 15 H 0.117 0.883 16 C 0.154 3.846 17 N -0.711 5.711 18 C 0.551 3.449 19 O -0.581 6.581 20 C -0.141 4.141 21 C -0.088 4.088 22 C -0.105 4.105 23 C -0.116 4.116 24 C 0.100 3.900 25 F -0.229 7.229 26 C -0.106 4.106 27 C -0.078 4.078 28 C 0.142 3.858 29 H 0.247 0.753 30 H 0.004 0.996 31 H 0.080 0.920 32 H 0.388 0.612 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.412 0.588 36 H 0.147 0.853 37 H 0.159 0.841 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.155 0.845 41 H 0.130 0.870 42 H 0.012 0.988 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.233 -22.809 5.485 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.212 1.212 5 H -0.199 1.199 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.346 5.346 10 C 0.001 3.999 11 C 0.032 3.968 12 H 0.108 0.892 13 O -0.377 6.377 14 C -0.110 4.110 15 H 0.135 0.865 16 C 0.030 3.970 17 N -0.362 5.362 18 C 0.340 3.660 19 O -0.463 6.463 20 C -0.144 4.144 21 C -0.107 4.107 22 C -0.123 4.123 23 C -0.117 4.117 24 C 0.046 3.954 25 F -0.210 7.210 26 C -0.124 4.124 27 C -0.097 4.097 28 C 0.016 3.984 29 H 0.057 0.943 30 H 0.021 0.979 31 H 0.098 0.902 32 H 0.237 0.763 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.250 0.750 36 H 0.165 0.835 37 H 0.176 0.824 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.172 0.828 41 H 0.148 0.852 42 H 0.030 0.970 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 8.408 -23.161 4.835 25.110 hybrid contribution -0.174 1.914 0.008 1.922 sum 8.234 -21.247 4.844 23.296 Atomic orbital electron populations 1.69986 1.05996 1.24982 1.58805 1.25555 0.96688 1.00732 1.02814 0.85082 0.77533 0.79259 0.77483 1.21150 1.19911 1.21956 1.19411 0.90901 0.83913 1.42314 0.90583 1.44644 1.02637 1.00723 1.86640 1.22507 0.84720 0.95352 0.97355 1.23147 0.97314 0.95246 0.81123 0.89185 1.86381 1.55483 1.76719 1.19144 1.22464 0.95282 0.93385 0.99882 0.86541 1.20956 0.88697 0.91148 0.96163 1.45905 1.35691 1.28063 1.26566 1.18708 0.83028 0.80446 0.83811 1.90747 1.61502 1.69758 1.24281 1.20008 0.98066 0.98433 0.97925 1.21570 0.95721 0.99715 0.93664 1.21370 0.95716 0.94083 1.01131 1.20799 0.97959 0.97082 0.95832 1.21132 0.75980 0.97680 1.00611 1.92795 1.47928 1.89325 1.90980 1.21307 0.95220 1.00637 0.95234 1.21366 0.95588 0.93269 0.99475 1.21440 0.94600 0.84731 0.97585 0.94303 0.97860 0.90224 0.76286 0.90893 0.93066 0.75037 0.83501 0.82360 0.87052 0.87245 0.82766 0.85248 0.97035 0.94771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.22 10.08 21.65 0.22 -55.00 16 2 C -0.07 -3.68 5.49 84.86 0.47 -3.21 16 3 Si 0.98 45.55 29.55 68.60 2.03 47.58 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 6 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.24 -13.23 10.27 84.03 0.86 -12.37 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.62 -31.42 3.39 -691.56 -2.35 -33.77 16 10 C 0.13 5.89 5.65 86.93 0.49 6.38 16 11 C 0.09 3.24 4.17 32.06 0.13 3.38 16 12 H 0.09 2.58 8.14 -2.39 -0.02 2.57 16 13 O -0.57 -20.74 12.23 -148.98 -1.82 -22.56 16 14 C -0.09 -2.88 2.94 -9.60 -0.03 -2.91 16 15 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 16 C 0.15 4.71 4.59 86.38 0.40 5.11 16 17 N -0.71 -18.56 5.35 -465.96 -2.49 -21.05 16 18 C 0.55 16.06 7.77 86.79 0.67 16.73 16 19 O -0.58 -21.55 16.35 -3.90 -0.06 -21.62 16 20 C -0.14 -3.22 5.87 -20.09 -0.12 -3.34 16 21 C -0.09 -1.50 9.54 22.53 0.21 -1.28 16 22 C -0.11 -1.42 9.68 22.23 0.22 -1.20 16 23 C -0.12 -1.54 5.60 -19.81 -0.11 -1.65 16 24 C 0.10 0.85 7.67 71.24 0.55 1.39 16 25 F -0.23 -3.68 17.34 44.97 0.78 -2.90 16 26 C -0.11 -1.61 9.68 22.23 0.22 -1.39 16 27 C -0.08 -1.63 9.60 22.53 0.22 -1.42 16 28 C 0.14 5.67 6.52 86.73 0.57 6.24 16 29 H 0.25 14.01 8.31 -92.70 -0.77 13.24 16 30 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.08 4.27 5.85 -2.39 -0.01 4.25 16 32 H 0.39 11.56 9.12 -74.06 -0.68 10.89 16 33 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.05 1.92 7.44 -2.38 -0.02 1.90 16 35 H 0.41 8.47 6.36 -92.71 -0.59 7.88 16 36 H 0.15 1.92 6.41 -2.91 -0.02 1.90 16 37 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.11 0.40 8.08 -2.39 -0.02 0.38 16 39 H 0.11 0.42 8.08 -2.39 -0.02 0.40 16 40 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 41 H 0.13 2.87 7.65 -2.91 -0.02 2.85 16 42 H 0.01 0.50 7.76 -2.39 -0.02 0.48 16 43 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -76.38 360.39 0.83 -75.55 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -0.21 Total: 23.32 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 4.74 Total: 10.44 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -4.62 Total: -109.82 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -1.89 Total: -44.18 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.78 Total: -2.90 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -76.38 0.83 -75.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958737165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.270 kcal (2) G-P(sol) polarization free energy of solvation -76.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds