Wall clock time and date at job start Tue Mar 31 2020 13:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00681 * 2 1 4 4 H 1.48496 * 109.47397 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46730 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47265 * 59.99429 * 3 2 1 7 7 C 1.38812 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00369 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64863 * 179.97438 * 9 7 2 11 11 C 1.54911 * 104.83388 * 204.10492 * 10 9 7 12 12 H 1.09003 * 111.03314 * 81.07613 * 11 10 9 13 13 C 1.52997 * 111.00612 * 204.91472 * 11 10 9 14 14 N 1.46505 * 109.47212 * 287.19592 * 13 11 10 15 15 C 1.34771 * 119.99622 * 179.97438 * 14 13 11 16 16 O 1.21548 * 120.00715 * 0.02562 * 15 14 13 17 17 C 1.47851 * 119.99564 * 180.02562 * 15 14 13 18 18 C 1.39574 * 120.14597 * 359.72565 * 17 15 14 19 19 C 1.37954 * 119.85452 * 179.75160 * 18 17 15 20 20 C 1.38366 * 120.14271 * 0.52261 * 19 18 17 21 21 C 1.50703 * 119.85270 * 179.72549 * 20 19 18 22 22 F 1.39901 * 109.47174 * 270.02602 * 21 20 19 23 23 C 1.38357 * 120.29331 * 359.75569 * 20 19 18 24 24 C 1.37963 * 120.14265 * 359.96860 * 23 20 19 25 25 C 1.55156 * 101.58009 * 322.99241 * 11 10 9 26 26 H 1.08997 * 110.71758 * 276.95631 * 25 11 10 27 27 O 1.42902 * 110.72143 * 153.86382 * 25 11 10 28 28 C 1.47024 * 125.64841 * 359.97410 * 9 7 2 29 29 H 0.97001 * 119.99345 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.36780 * 85.26678 * 10 9 7 31 31 H 1.09005 * 110.36705 * 322.94521 * 10 9 7 32 32 H 1.09002 * 109.47153 * 167.19584 * 13 11 10 33 33 H 1.09001 * 109.46832 * 47.19775 * 13 11 10 34 34 H 0.96996 * 119.99606 * 0.02562 * 14 13 11 35 35 H 1.08000 * 120.07159 * 0.02562 * 18 17 15 36 36 H 1.08001 * 119.93023 * 180.27587 * 19 18 17 37 37 H 1.09000 * 109.47008 * 30.02703 * 21 20 19 38 38 H 1.08998 * 109.47198 * 150.02745 * 21 20 19 39 39 H 1.07994 * 119.92803 * 179.97438 * 23 20 19 40 40 H 1.08000 * 120.07196 * 180.02562 * 24 23 20 41 41 H 0.96691 * 113.99891 * 179.97438 * 27 25 11 42 42 H 1.08993 * 109.88499 * 59.54475 * 28 9 7 43 43 H 1.09006 * 110.00846 * 298.44912 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3461 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 1.9332 -3.7312 0.0005 11 6 0.8513 -4.6561 -0.6110 12 1 0.8556 -4.5966 -1.6994 13 6 1.0365 -6.1008 -0.1429 14 7 2.2052 -6.6834 -0.8070 15 6 2.5636 -7.9562 -0.5462 16 8 1.9170 -8.6209 0.2396 17 6 3.7434 -8.5439 -1.2160 18 6 4.4847 -7.7853 -2.1232 19 6 5.5874 -8.3381 -2.7409 20 6 5.9527 -9.6450 -2.4709 21 6 7.1550 -10.2443 -3.1540 22 9 6.7579 -10.8480 -4.3520 23 6 5.2188 -10.4044 -1.5770 24 6 4.1172 -9.8618 -0.9482 25 6 -0.4487 -4.0440 -0.0258 26 1 -0.6333 -4.4205 0.9803 27 8 -1.5635 -4.3157 -0.8776 28 6 -0.1377 -2.5327 0.0005 29 1 -0.4849 0.8401 -0.0004 30 1 2.1664 -4.0421 1.0189 31 1 2.8326 -3.7406 -0.6152 32 1 0.1487 -6.6810 -0.3948 33 1 1.1866 -6.1165 0.9366 34 1 2.7214 -6.1529 -1.4338 35 1 4.1982 -6.7664 -2.3378 36 1 6.1645 -7.7507 -3.4397 37 1 7.8812 -9.4596 -3.3658 38 1 7.6076 -10.9922 -2.5029 39 1 5.5090 -11.4240 -1.3709 40 1 3.5454 -10.4554 -0.2503 41 1 -2.4010 -3.9547 -0.5564 42 1 -0.5577 -2.0522 -0.8830 43 1 -0.5569 -2.0838 0.9011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958737166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:01 Heat of formation + Delta-G solvation = -86.411962 kcal Electronic energy + Delta-G solvation = -26252.991955 eV Core-core repulsion = 22212.982863 eV Total energy + Delta-G solvation = -4040.009092 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.02962 -40.39278 -38.84186 -38.09091 -35.22435 -34.73643 -32.94260 -32.16014 -31.35502 -29.76930 -27.80905 -27.13124 -25.47424 -23.74178 -23.08771 -22.41275 -20.72288 -20.27874 -19.89617 -18.19112 -17.03838 -16.80865 -16.68877 -16.44482 -16.23966 -15.79591 -15.44561 -15.17150 -14.86755 -14.64452 -14.29440 -14.09670 -13.88238 -13.70776 -13.37853 -13.12315 -12.73794 -12.68392 -12.47729 -12.05328 -11.75338 -11.54730 -11.46960 -11.31106 -11.26545 -11.00194 -10.87018 -10.62596 -10.17847 -10.05476 -9.86952 -9.81219 -9.39026 -9.34940 -9.25133 -8.98794 -8.70407 -6.94645 -5.80033 -3.14696 0.43088 0.99730 2.64094 3.08951 3.34695 3.40079 3.42728 3.55536 3.99335 4.21393 4.39560 4.44737 4.53130 4.59198 4.67239 4.72492 4.95213 5.00397 5.13136 5.17691 5.18678 5.38621 5.40825 5.46580 5.59813 5.63444 5.81331 5.86203 5.94622 5.99694 6.02211 6.03864 6.17011 6.28945 6.36320 6.45453 6.51216 6.77142 7.35190 7.44883 7.45734 7.70813 8.13150 8.14615 8.16368 9.11509 9.72069 10.36101 11.31637 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.002535 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.523435 B =11044.512171 C =12364.879575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.230 4.230 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.141 3.859 11 C -0.108 4.108 12 H 0.090 0.910 13 C 0.133 3.867 14 N -0.717 5.717 15 C 0.554 3.446 16 O -0.539 6.539 17 C -0.119 4.119 18 C -0.087 4.087 19 C -0.104 4.104 20 C -0.117 4.117 21 C 0.104 3.896 22 F -0.210 7.210 23 C -0.106 4.106 24 C -0.063 4.063 25 C 0.083 3.917 26 H 0.057 0.943 27 O -0.567 6.567 28 C 0.152 3.848 29 H 0.253 0.747 30 H 0.024 0.976 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.401 0.599 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.376 0.624 42 H 0.058 0.942 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.108 -18.872 -4.257 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.358 4.358 8 H 0.098 0.902 9 N -0.330 5.330 10 C 0.015 3.985 11 C -0.128 4.128 12 H 0.108 0.892 13 C 0.009 3.991 14 N -0.368 5.368 15 C 0.341 3.659 16 O -0.417 6.417 17 C -0.122 4.122 18 C -0.105 4.105 19 C -0.122 4.122 20 C -0.118 4.118 21 C 0.050 3.950 22 F -0.191 7.191 23 C -0.124 4.124 24 C -0.082 4.082 25 C 0.023 3.977 26 H 0.075 0.925 27 O -0.372 6.372 28 C 0.027 3.973 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.237 0.763 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.150 0.850 40 H 0.158 0.842 41 H 0.223 0.777 42 H 0.076 0.924 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.027 -19.399 -4.062 22.211 hybrid contribution 0.186 1.576 0.009 1.587 sum 10.212 -17.823 -4.053 20.937 Atomic orbital electron populations 1.69953 1.04947 1.25084 1.56941 1.24828 0.95768 0.97819 1.02017 0.86016 0.78702 0.83564 0.77287 1.20448 1.21681 1.21695 1.19109 0.90481 0.82212 1.44046 0.90196 1.44317 1.01335 0.99950 1.87365 1.21626 0.94019 0.85794 0.97059 1.22620 0.96257 0.92267 1.01670 0.89203 1.21428 0.87362 0.93083 0.97200 1.45973 1.31333 1.13040 1.46458 1.18231 0.84095 0.81770 0.81810 1.90770 1.54391 1.60889 1.35694 1.20116 0.96953 0.95610 0.99537 1.21389 0.94439 0.99799 0.94912 1.21013 0.97023 0.94617 0.99516 1.20444 0.97972 0.95049 0.98351 1.20848 0.94079 0.97768 0.82340 1.92827 1.92662 1.85331 1.48296 1.21039 0.95081 0.99899 0.96414 1.21294 0.95419 0.93783 0.97678 1.23121 0.85081 0.97899 0.91625 0.92494 1.86418 1.18866 1.80135 1.51734 1.21820 0.85182 0.88488 1.01853 0.93695 0.95856 0.93969 0.90965 0.91120 0.76319 0.84939 0.84957 0.89567 0.89638 0.85047 0.84225 0.77677 0.92390 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.49 10.31 55.49 0.57 -25.92 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.23 -6.24 10.28 -15.06 -0.15 -6.39 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -14.85 3.39 -170.07 -0.58 -15.42 16 10 C 0.14 2.73 6.65 -2.53 -0.02 2.72 16 11 C -0.11 -1.83 2.77 -88.47 -0.25 -2.07 16 12 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 13 C 0.13 1.96 5.13 -4.04 -0.02 1.94 16 14 N -0.72 -9.32 5.45 -61.25 -0.33 -9.66 16 15 C 0.55 7.73 7.77 -12.33 -0.10 7.64 16 16 O -0.54 -9.28 16.35 5.32 0.09 -9.19 16 17 C -0.12 -1.35 5.87 -104.97 -0.62 -1.97 16 18 C -0.09 -0.80 9.54 -39.19 -0.37 -1.18 16 19 C -0.10 -0.84 9.68 -39.64 -0.38 -1.22 16 20 C -0.12 -0.93 5.60 -104.53 -0.59 -1.51 16 21 C 0.10 0.61 7.67 36.01 0.28 0.89 16 22 F -0.21 -1.89 17.34 2.25 0.04 -1.85 16 23 C -0.11 -0.88 9.68 -39.64 -0.38 -1.26 16 24 C -0.06 -0.65 9.60 -39.18 -0.38 -1.02 16 25 C 0.08 1.52 3.80 -24.90 -0.09 1.42 16 26 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 27 O -0.57 -9.70 13.39 -35.23 -0.47 -10.17 16 28 C 0.15 3.56 5.15 -3.06 -0.02 3.54 16 29 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.02 0.46 7.91 -51.93 -0.41 0.05 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16 34 H 0.40 4.40 6.51 -40.82 -0.27 4.13 16 35 H 0.13 1.01 6.41 -52.49 -0.34 0.68 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.09 0.34 8.08 -51.93 -0.42 -0.08 16 38 H 0.09 0.33 8.08 -51.93 -0.42 -0.09 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.14 1.43 7.65 -52.49 -0.40 1.02 16 41 H 0.38 4.99 9.12 45.56 0.42 5.40 16 42 H 0.06 1.53 7.30 -51.93 -0.38 1.15 16 43 H 0.05 1.17 7.50 -51.93 -0.39 0.78 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -33.90 363.02 -8.52 -42.41 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.10 Total: 6.51 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -3.18 Total: 1.20 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.34 Total: -51.00 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.38 Total: -19.37 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.90 -8.52 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958737166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.998 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds