Wall clock time and date at job start Tue Mar 31 2020 13:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00681 * 2 1 4 4 H 1.48496 * 109.47397 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46730 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47265 * 59.99429 * 3 2 1 7 7 C 1.38812 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00369 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64863 * 179.97438 * 9 7 2 11 11 C 1.54911 * 104.83388 * 204.10492 * 10 9 7 12 12 H 1.09003 * 111.03314 * 81.07613 * 11 10 9 13 13 C 1.52997 * 111.00612 * 204.91472 * 11 10 9 14 14 N 1.46505 * 109.47212 * 287.19592 * 13 11 10 15 15 C 1.34771 * 119.99622 * 179.97438 * 14 13 11 16 16 O 1.21548 * 120.00715 * 0.02562 * 15 14 13 17 17 C 1.47851 * 119.99564 * 180.02562 * 15 14 13 18 18 C 1.39574 * 120.14597 * 359.72565 * 17 15 14 19 19 C 1.37954 * 119.85452 * 179.75160 * 18 17 15 20 20 C 1.38366 * 120.14271 * 0.52261 * 19 18 17 21 21 C 1.50703 * 119.85270 * 179.72549 * 20 19 18 22 22 F 1.39901 * 109.47174 * 270.02602 * 21 20 19 23 23 C 1.38357 * 120.29331 * 359.75569 * 20 19 18 24 24 C 1.37963 * 120.14265 * 359.96860 * 23 20 19 25 25 C 1.55156 * 101.58009 * 322.99241 * 11 10 9 26 26 H 1.08997 * 110.71758 * 276.95631 * 25 11 10 27 27 O 1.42902 * 110.72143 * 153.86382 * 25 11 10 28 28 C 1.47024 * 125.64841 * 359.97410 * 9 7 2 29 29 H 0.97001 * 119.99345 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.36780 * 85.26678 * 10 9 7 31 31 H 1.09005 * 110.36705 * 322.94521 * 10 9 7 32 32 H 1.09002 * 109.47153 * 167.19584 * 13 11 10 33 33 H 1.09001 * 109.46832 * 47.19775 * 13 11 10 34 34 H 0.96996 * 119.99606 * 0.02562 * 14 13 11 35 35 H 1.08000 * 120.07159 * 0.02562 * 18 17 15 36 36 H 1.08001 * 119.93023 * 180.27587 * 19 18 17 37 37 H 1.09000 * 109.47008 * 30.02703 * 21 20 19 38 38 H 1.08998 * 109.47198 * 150.02745 * 21 20 19 39 39 H 1.07994 * 119.92803 * 179.97438 * 23 20 19 40 40 H 1.08000 * 120.07196 * 180.02562 * 24 23 20 41 41 H 0.96691 * 113.99891 * 179.97438 * 27 25 11 42 42 H 1.08993 * 109.88499 * 59.54475 * 28 9 7 43 43 H 1.09006 * 110.00846 * 298.44912 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3461 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 1.9332 -3.7312 0.0005 11 6 0.8513 -4.6561 -0.6110 12 1 0.8556 -4.5966 -1.6994 13 6 1.0365 -6.1008 -0.1429 14 7 2.2052 -6.6834 -0.8070 15 6 2.5636 -7.9562 -0.5462 16 8 1.9170 -8.6209 0.2396 17 6 3.7434 -8.5439 -1.2160 18 6 4.4847 -7.7853 -2.1232 19 6 5.5874 -8.3381 -2.7409 20 6 5.9527 -9.6450 -2.4709 21 6 7.1550 -10.2443 -3.1540 22 9 6.7579 -10.8480 -4.3520 23 6 5.2188 -10.4044 -1.5770 24 6 4.1172 -9.8618 -0.9482 25 6 -0.4487 -4.0440 -0.0258 26 1 -0.6333 -4.4205 0.9803 27 8 -1.5635 -4.3157 -0.8776 28 6 -0.1377 -2.5327 0.0005 29 1 -0.4849 0.8401 -0.0004 30 1 2.1664 -4.0421 1.0189 31 1 2.8326 -3.7406 -0.6152 32 1 0.1487 -6.6810 -0.3948 33 1 1.1866 -6.1165 0.9366 34 1 2.7214 -6.1529 -1.4338 35 1 4.1982 -6.7664 -2.3378 36 1 6.1645 -7.7507 -3.4397 37 1 7.8812 -9.4596 -3.3658 38 1 7.6076 -10.9922 -2.5029 39 1 5.5090 -11.4240 -1.3709 40 1 3.5454 -10.4554 -0.2503 41 1 -2.4010 -3.9547 -0.5564 42 1 -0.5577 -2.0522 -0.8830 43 1 -0.5569 -2.0838 0.9011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958737166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:00 Heat of formation + Delta-G solvation = -110.549728 kcal Electronic energy + Delta-G solvation = -26254.038647 eV Core-core repulsion = 22212.982863 eV Total energy + Delta-G solvation = -4041.055784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.58559 -41.34929 -40.03493 -39.29096 -36.66382 -36.18503 -34.18772 -33.39913 -32.09921 -31.31336 -29.38961 -28.06871 -27.02569 -25.20525 -23.76387 -23.32657 -22.23706 -21.64987 -21.13057 -19.25641 -18.77923 -18.20296 -17.49517 -17.24992 -16.95873 -16.77963 -16.62281 -16.43880 -16.02453 -15.77252 -15.55590 -15.30654 -14.90649 -14.77507 -14.46385 -14.40080 -14.07190 -13.91555 -13.79524 -13.42797 -13.22040 -13.11224 -12.76253 -12.46930 -12.30042 -12.25259 -12.10135 -11.92673 -11.82426 -11.78910 -11.52671 -11.11154 -10.81985 -10.74845 -10.29743 -10.02822 -9.93586 -8.94658 -7.87271 -5.23822 -0.31886 0.33899 1.46787 1.47222 1.57623 1.73163 2.03543 2.47434 2.76437 3.22042 3.33308 3.42259 3.55003 3.63298 3.70362 3.78549 3.87815 3.92837 4.12987 4.13444 4.14631 4.36415 4.38568 4.44095 4.53741 4.59776 4.66743 4.73297 4.82486 4.86086 4.92945 4.98423 5.18308 5.22708 5.28848 5.35466 5.39981 5.41883 5.47781 5.70471 5.80968 6.15520 6.43139 6.87455 7.06254 7.08699 7.72985 8.36289 9.23144 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.002535 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.523435 B =11044.512171 C =12364.879575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.240 4.240 8 H 0.088 0.912 9 N -0.625 5.625 10 C 0.139 3.861 11 C -0.090 4.090 12 H 0.088 0.912 13 C 0.146 3.854 14 N -0.710 5.710 15 C 0.554 3.446 16 O -0.579 6.579 17 C -0.141 4.141 18 C -0.088 4.088 19 C -0.106 4.106 20 C -0.116 4.116 21 C 0.100 3.900 22 F -0.228 7.228 23 C -0.106 4.106 24 C -0.077 4.077 25 C 0.096 3.904 26 H 0.075 0.925 27 O -0.570 6.570 28 C 0.161 3.839 29 H 0.247 0.753 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.412 0.588 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.155 0.845 40 H 0.131 0.869 41 H 0.393 0.607 42 H 0.020 0.980 43 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.498 -20.007 -5.115 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.369 4.369 8 H 0.106 0.894 9 N -0.352 5.352 10 C 0.014 3.986 11 C -0.109 4.109 12 H 0.106 0.894 13 C 0.022 3.978 14 N -0.361 5.361 15 C 0.343 3.657 16 O -0.460 6.460 17 C -0.144 4.144 18 C -0.107 4.107 19 C -0.124 4.124 20 C -0.117 4.117 21 C 0.046 3.954 22 F -0.209 7.209 23 C -0.124 4.124 24 C -0.096 4.096 25 C 0.036 3.964 26 H 0.093 0.907 27 O -0.377 6.377 28 C 0.035 3.965 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.250 0.750 35 H 0.164 0.836 36 H 0.175 0.825 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.172 0.828 40 H 0.149 0.851 41 H 0.243 0.757 42 H 0.038 0.962 43 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 12.443 -20.552 -4.936 24.527 hybrid contribution -0.518 1.879 0.259 1.966 sum 11.925 -18.672 -4.678 22.644 Atomic orbital electron populations 1.70172 1.06364 1.25250 1.58360 1.25682 0.96647 1.01171 1.02599 0.84993 0.78353 0.79322 0.76563 1.18646 1.22053 1.22127 1.19533 0.91171 0.83399 1.42805 0.89378 1.44622 1.02067 1.01322 1.87195 1.21799 0.95135 0.83795 0.97841 1.22415 0.94395 0.92863 1.01251 0.89364 1.21152 0.88089 0.91478 0.97089 1.45850 1.30839 1.13047 1.46399 1.18649 0.84390 0.81495 0.81189 1.90742 1.55901 1.61805 1.37593 1.20001 0.96889 0.96420 1.01113 1.21569 0.94528 1.00301 0.94305 1.21362 0.96610 0.95042 0.99391 1.20790 0.98255 0.94996 0.97615 1.21120 0.93439 0.99119 0.81735 1.92792 1.92873 1.85744 1.49532 1.21309 0.94185 1.01011 0.95917 1.21370 0.96355 0.93620 0.98214 1.22896 0.86245 0.94273 0.93028 0.90690 1.86388 1.19501 1.79945 1.51855 1.21581 0.84733 0.91700 0.98452 0.94412 0.95226 0.92330 0.91212 0.91359 0.75006 0.83586 0.82525 0.87217 0.87286 0.82756 0.85069 0.75730 0.96200 0.96918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.42 10.31 21.65 0.22 -56.20 16 2 C -0.07 -3.80 5.49 84.86 0.47 -3.34 16 3 Si 0.98 44.79 29.55 68.60 2.03 46.82 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 7 C -0.24 -13.03 10.28 84.03 0.86 -12.17 16 8 H 0.09 4.50 7.83 -2.91 -0.02 4.48 16 9 N -0.62 -30.92 3.39 -691.98 -2.35 -33.27 16 10 C 0.14 5.22 6.65 86.86 0.58 5.80 16 11 C -0.09 -2.91 2.77 -9.40 -0.03 -2.93 16 12 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 13 C 0.15 4.13 5.13 86.38 0.44 4.57 16 14 N -0.71 -17.53 5.45 -465.97 -2.54 -20.07 16 15 C 0.55 15.17 7.77 86.79 0.67 15.85 16 16 O -0.58 -20.07 16.35 -3.87 -0.06 -20.13 16 17 C -0.14 -3.07 5.87 -20.09 -0.12 -3.19 16 18 C -0.09 -1.46 9.54 22.52 0.21 -1.25 16 19 C -0.11 -1.41 9.68 22.23 0.22 -1.20 16 20 C -0.12 -1.50 5.60 -19.80 -0.11 -1.61 16 21 C 0.10 0.83 7.67 71.24 0.55 1.38 16 22 F -0.23 -3.52 17.34 44.97 0.78 -2.74 16 23 C -0.11 -1.54 9.68 22.23 0.22 -1.32 16 24 C -0.08 -1.52 9.60 22.53 0.22 -1.31 16 25 C 0.10 3.46 3.80 31.78 0.12 3.58 16 26 H 0.08 2.47 8.04 -2.39 -0.02 2.45 16 27 O -0.57 -19.01 13.39 -148.98 -1.99 -21.01 16 28 C 0.16 7.74 5.15 86.73 0.45 8.18 16 29 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.03 1.10 7.91 -2.39 -0.02 1.09 16 31 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.07 2.00 7.96 -2.39 -0.02 1.98 16 34 H 0.41 8.26 6.51 -92.71 -0.60 7.65 16 35 H 0.15 1.88 6.41 -2.91 -0.02 1.86 16 36 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 37 H 0.11 0.42 8.08 -2.39 -0.02 0.41 16 38 H 0.11 0.41 8.08 -2.39 -0.02 0.40 16 39 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 40 H 0.13 2.73 7.65 -2.91 -0.02 2.71 16 41 H 0.39 10.15 9.12 -74.06 -0.68 9.47 16 42 H 0.02 1.09 7.30 -2.39 -0.02 1.07 16 43 H 0.01 0.68 7.50 -2.38 -0.02 0.66 16 Total: -1.00 -74.89 363.02 0.60 -74.29 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -0.23 Total: 21.26 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 4.74 Total: 11.05 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -4.67 Total: -109.54 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -2.06 Total: -41.14 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.78 Total: -2.74 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -74.89 0.60 -74.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958737166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.258 kcal (2) G-P(sol) polarization free energy of solvation -74.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds