Wall clock time and date at job start Tue Mar 31 2020 13:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00166 * 2 1 4 4 H 1.48500 * 109.46797 * 239.99889 * 3 2 1 5 5 H 1.48496 * 109.47289 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47306 * 120.00357 * 3 2 1 7 7 C 1.38820 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99425 * 189.09771 * 7 2 1 9 9 N 1.36929 * 119.99794 * 9.09839 * 7 2 1 10 10 C 1.48150 * 127.84339 * 15.57345 * 9 7 2 11 11 C 1.54386 * 104.61683 * 140.41283 * 10 9 7 12 12 H 1.09007 * 117.61627 * 242.76353 * 11 10 9 13 13 C 1.54282 * 104.96358 * 23.86831 * 11 10 9 14 14 H 1.08999 * 121.81547 * 222.17366 * 13 11 10 15 15 C 1.48150 * 127.83534 * 195.56884 * 9 7 2 16 16 C 1.52999 * 118.12278 * 87.19591 * 11 10 9 17 17 H 1.08998 * 117.44547 * 16.05502 * 16 11 10 18 18 N 1.46502 * 117.44483 * 160.80606 * 16 11 10 19 19 C 1.34768 * 120.00205 * 204.99793 * 18 16 11 20 20 O 1.21562 * 120.00132 * 359.97438 * 19 18 16 21 21 C 1.47771 * 120.00192 * 179.97438 * 19 18 16 22 22 C 1.40659 * 119.74904 * 0.22387 * 21 19 18 23 23 C 1.35722 * 120.84880 * 180.28274 * 22 21 19 24 24 C 1.40707 * 120.02051 * 359.74940 * 23 22 21 25 25 C 1.40482 * 121.04680 * 179.97438 * 24 23 22 26 26 C 1.36146 * 119.72090 * 180.02562 * 25 24 23 27 27 C 1.39369 * 121.00842 * 359.97438 * 26 25 24 28 28 C 1.36089 * 120.95488 * 359.97438 * 27 26 25 29 29 C 1.40657 * 119.66119 * 0.02562 * 28 27 26 30 30 C 1.38489 * 119.74940 * 180.02562 * 21 19 18 31 31 H 0.97009 * 119.99715 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.40489 * 21.62691 * 10 9 7 33 33 H 1.08996 * 110.40636 * 259.19860 * 10 9 7 34 34 H 1.08999 * 110.40772 * 338.37189 * 15 9 7 35 35 H 1.09002 * 110.40520 * 100.68369 * 15 9 7 36 36 H 0.97005 * 119.99598 * 24.99815 * 18 16 11 37 37 H 1.07999 * 119.57493 * 0.03889 * 22 21 19 38 38 H 1.08001 * 119.99164 * 179.73306 * 23 22 21 39 39 H 1.07999 * 120.14255 * 0.04484 * 25 24 23 40 40 H 1.07998 * 119.49287 * 180.02562 * 26 25 24 41 41 H 1.08003 * 119.52078 * 180.02562 * 27 26 25 42 42 H 1.07999 * 120.16827 * 179.97438 * 28 27 26 43 43 H 1.07995 * 120.27848 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0800 -1.2080 0.1484 9 7 1.3384 -2.3807 -0.1865 10 6 -0.0344 -2.5711 -0.7101 11 6 0.0636 -3.8173 -1.6160 12 1 -0.1486 -3.6884 -2.6774 13 6 1.2858 -4.5977 -1.0892 14 1 2.0093 -5.0559 -1.7635 15 6 1.8194 -3.7546 0.0889 16 6 -0.1187 -5.1932 -0.9720 17 1 -0.5677 -5.2278 0.0205 18 7 -0.4530 -6.3132 -1.8553 19 6 -1.1035 -7.3869 -1.3652 20 8 -1.4125 -7.4263 -0.1902 21 6 -1.4413 -8.5163 -2.2563 22 6 -1.0771 -8.4673 -3.6140 23 6 -1.3810 -9.4895 -4.4534 24 6 -2.0645 -10.6196 -3.9680 25 6 -2.3904 -11.6897 -4.8178 26 6 -3.0526 -12.7698 -4.3196 27 6 -3.4140 -12.8330 -2.9750 28 6 -3.1146 -11.8165 -2.1212 29 6 -2.4311 -10.6841 -2.5997 30 6 -2.1103 -9.6169 -1.7473 31 1 -0.4850 0.8401 0.0004 32 1 -0.3434 -1.7021 -1.2911 33 1 -0.7318 -2.7499 0.1082 34 1 2.9089 -3.7786 0.1107 35 1 1.4131 -4.1174 1.0330 36 1 -0.2061 -6.2819 -2.7928 37 1 -0.5522 -7.6034 -3.9942 38 1 -1.0985 -9.4355 -5.4944 39 1 -2.1165 -11.6558 -5.8620 40 1 -3.3010 -13.5906 -4.9761 41 1 -3.9386 -13.7017 -2.6052 42 1 -3.4011 -11.8786 -1.0818 43 1 -2.3850 -9.6523 -0.7035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962369206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:38 Heat of formation + Delta-G solvation = 72.176799 kcal Electronic energy + Delta-G solvation = -25045.832487 eV Core-core repulsion = 21443.469545 eV Total energy + Delta-G solvation = -3602.362942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.85260 -39.67668 -38.34877 -36.44715 -34.55003 -33.06934 -32.73516 -30.94136 -29.98801 -29.55263 -27.15621 -25.85890 -24.49451 -23.53730 -22.31599 -21.83595 -20.73388 -20.29451 -19.30745 -18.14470 -17.61104 -17.05710 -16.76916 -16.08064 -15.67098 -15.06709 -14.89415 -14.70293 -14.36799 -13.97897 -13.80586 -13.75699 -13.56285 -13.46269 -13.25119 -12.75333 -12.30888 -12.18236 -11.71915 -11.61166 -11.50545 -11.45904 -11.19762 -10.99855 -10.81768 -10.40809 -10.34018 -10.22911 -10.17631 -9.94088 -9.73284 -9.20602 -9.01221 -8.73287 -8.38492 -8.22665 -6.87196 -5.79793 -3.14101 0.06231 0.48937 1.63830 2.27061 3.05321 3.15428 3.39147 3.43379 3.44716 3.80901 4.21703 4.31807 4.41995 4.43341 4.47167 4.58463 4.71491 4.86922 4.91191 4.94355 5.01492 5.15935 5.35925 5.38029 5.43427 5.53266 5.55637 5.68155 5.76704 5.82020 5.83572 5.89994 6.00008 6.11771 6.13205 6.18603 6.23308 6.42717 6.52412 6.57777 6.69782 6.79013 6.89613 7.34361 7.52135 7.54094 7.70837 8.20221 8.21801 9.10612 9.73370 10.50471 11.34548 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.042010 B = 0.002013 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.345257 B =13906.052623 C =14139.626277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.179 4.179 12 H 0.103 0.897 13 C -0.182 4.182 14 H 0.103 0.897 15 C 0.156 3.844 16 C 0.095 3.905 17 H 0.133 0.867 18 N -0.691 5.691 19 C 0.559 3.441 20 O -0.535 6.535 21 C -0.129 4.129 22 C -0.089 4.089 23 C -0.111 4.111 24 C -0.036 4.036 25 C -0.112 4.112 26 C -0.108 4.108 27 C -0.122 4.122 28 C -0.094 4.094 29 C -0.063 4.063 30 C -0.035 4.035 31 H 0.255 0.745 32 H 0.092 0.908 33 H 0.026 0.974 34 H 0.052 0.948 35 H 0.028 0.972 36 H 0.398 0.602 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.734 -25.304 -11.451 28.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.200 4.200 12 H 0.121 0.879 13 C -0.203 4.203 14 H 0.121 0.879 15 C 0.029 3.971 16 C -0.011 4.011 17 H 0.150 0.850 18 N -0.340 5.340 19 C 0.346 3.654 20 O -0.412 6.412 21 C -0.133 4.133 22 C -0.108 4.108 23 C -0.129 4.129 24 C -0.036 4.036 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.140 4.140 28 C -0.112 4.112 29 C -0.063 4.063 30 C -0.054 4.054 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.233 0.767 37 H 0.145 0.855 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.149 0.851 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.973 -25.010 -10.562 27.798 hybrid contribution 0.607 0.836 -0.701 1.248 sum -5.366 -24.175 -11.263 27.204 Atomic orbital electron populations 1.69889 1.05053 1.25575 1.55614 1.24912 0.95660 0.98005 1.01726 0.86176 0.78527 0.82900 0.78003 1.21106 1.21543 1.20958 1.18946 0.90797 0.82283 1.43551 0.90561 1.45167 1.13325 0.99985 1.73147 1.21069 0.86973 0.92385 0.93688 1.24660 1.02272 0.92508 1.00598 0.87881 1.24371 0.90437 1.02400 1.03102 0.87924 1.21117 0.97239 0.85809 0.92954 1.21878 0.98614 0.84828 0.95746 0.84965 1.45295 1.58070 1.17821 1.12790 1.18185 0.77767 0.82026 0.87424 1.90783 1.53565 1.80201 1.16696 1.19916 1.03302 0.95935 0.94106 1.20923 0.98630 0.98892 0.92325 1.20916 0.99004 0.92994 1.00020 1.18222 0.97553 0.94927 0.92880 1.21063 0.99128 0.93328 0.99482 1.20936 0.97871 0.98178 0.95649 1.20885 1.00461 0.99013 0.93689 1.21142 0.97185 0.92697 1.00177 1.18072 0.99959 0.95252 0.93031 1.21528 0.93199 0.90602 1.00033 0.93463 0.89022 0.95575 0.92982 0.95413 0.76683 0.85473 0.84942 0.85350 0.85826 0.85737 0.85113 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.86 55.49 0.60 -26.23 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.91 29.56 -169.99 -5.03 16.89 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.35 10.35 -15.06 -0.16 -6.50 16 8 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 9 N -0.59 -15.26 3.38 -168.86 -0.57 -15.83 16 10 C 0.18 4.46 5.70 -2.41 -0.01 4.45 16 11 C -0.18 -3.37 7.05 -89.22 -0.63 -4.00 16 12 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 13 C -0.18 -3.26 7.06 -89.22 -0.63 -3.89 16 14 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 15 C 0.16 3.32 7.04 -2.41 -0.02 3.30 16 16 C 0.10 1.63 5.98 -67.93 -0.41 1.22 16 17 H 0.13 2.57 7.40 -51.93 -0.38 2.19 16 18 N -0.69 -9.61 5.51 -54.77 -0.30 -9.92 16 19 C 0.56 8.32 7.76 -12.37 -0.10 8.22 16 20 O -0.53 -9.91 15.87 5.31 0.08 -9.83 16 21 C -0.13 -1.54 5.87 -104.99 -0.62 -2.16 16 22 C -0.09 -0.84 9.44 -39.57 -0.37 -1.21 16 23 C -0.11 -0.93 9.73 -39.55 -0.38 -1.31 16 24 C -0.04 -0.33 5.75 -106.76 -0.61 -0.94 16 25 C -0.11 -0.81 9.76 -39.49 -0.39 -1.20 16 26 C -0.11 -0.71 9.95 -39.91 -0.40 -1.10 16 27 C -0.12 -0.84 9.95 -39.93 -0.40 -1.23 16 28 C -0.09 -0.77 9.77 -39.44 -0.39 -1.15 16 29 C -0.06 -0.63 5.74 -106.85 -0.61 -1.24 16 30 C -0.03 -0.39 9.34 -38.72 -0.36 -0.75 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.09 2.45 6.51 -51.93 -0.34 2.11 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.40 4.33 6.81 -40.82 -0.28 4.05 16 37 H 0.13 0.92 6.34 -52.49 -0.33 0.59 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 40 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.12 0.57 8.06 -52.48 -0.42 0.14 16 42 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.14 1.60 7.61 -52.49 -0.40 1.20 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -33.11 359.96 -11.86 -44.97 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.51 Total: 4.30 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -6.57 Total: -9.77 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.27 Total: -51.98 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.11 -11.86 -44.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962369206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.151 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds