Wall clock time and date at job start Tue Mar 31 2020 13:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00166 * 2 1 4 4 H 1.48500 * 109.46797 * 239.99889 * 3 2 1 5 5 H 1.48496 * 109.47289 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47306 * 120.00357 * 3 2 1 7 7 C 1.38820 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99425 * 189.09771 * 7 2 1 9 9 N 1.36929 * 119.99794 * 9.09839 * 7 2 1 10 10 C 1.48150 * 127.84339 * 15.57345 * 9 7 2 11 11 C 1.54386 * 104.61683 * 140.41283 * 10 9 7 12 12 H 1.09007 * 117.61627 * 242.76353 * 11 10 9 13 13 C 1.54282 * 104.96358 * 23.86831 * 11 10 9 14 14 H 1.08999 * 121.81547 * 222.17366 * 13 11 10 15 15 C 1.48150 * 127.83534 * 195.56884 * 9 7 2 16 16 C 1.52999 * 118.12278 * 87.19591 * 11 10 9 17 17 H 1.08998 * 117.44547 * 16.05502 * 16 11 10 18 18 N 1.46502 * 117.44483 * 160.80606 * 16 11 10 19 19 C 1.34768 * 120.00205 * 204.99793 * 18 16 11 20 20 O 1.21562 * 120.00132 * 359.97438 * 19 18 16 21 21 C 1.47771 * 120.00192 * 179.97438 * 19 18 16 22 22 C 1.40659 * 119.74904 * 0.22387 * 21 19 18 23 23 C 1.35722 * 120.84880 * 180.28274 * 22 21 19 24 24 C 1.40707 * 120.02051 * 359.74940 * 23 22 21 25 25 C 1.40482 * 121.04680 * 179.97438 * 24 23 22 26 26 C 1.36146 * 119.72090 * 180.02562 * 25 24 23 27 27 C 1.39369 * 121.00842 * 359.97438 * 26 25 24 28 28 C 1.36089 * 120.95488 * 359.97438 * 27 26 25 29 29 C 1.40657 * 119.66119 * 0.02562 * 28 27 26 30 30 C 1.38489 * 119.74940 * 180.02562 * 21 19 18 31 31 H 0.97009 * 119.99715 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.40489 * 21.62691 * 10 9 7 33 33 H 1.08996 * 110.40636 * 259.19860 * 10 9 7 34 34 H 1.08999 * 110.40772 * 338.37189 * 15 9 7 35 35 H 1.09002 * 110.40520 * 100.68369 * 15 9 7 36 36 H 0.97005 * 119.99598 * 24.99815 * 18 16 11 37 37 H 1.07999 * 119.57493 * 0.03889 * 22 21 19 38 38 H 1.08001 * 119.99164 * 179.73306 * 23 22 21 39 39 H 1.07999 * 120.14255 * 0.04484 * 25 24 23 40 40 H 1.07998 * 119.49287 * 180.02562 * 26 25 24 41 41 H 1.08003 * 119.52078 * 180.02562 * 27 26 25 42 42 H 1.07999 * 120.16827 * 179.97438 * 28 27 26 43 43 H 1.07995 * 120.27848 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0800 -1.2080 0.1484 9 7 1.3384 -2.3807 -0.1865 10 6 -0.0344 -2.5711 -0.7101 11 6 0.0636 -3.8173 -1.6160 12 1 -0.1486 -3.6884 -2.6774 13 6 1.2858 -4.5977 -1.0892 14 1 2.0093 -5.0559 -1.7635 15 6 1.8194 -3.7546 0.0889 16 6 -0.1187 -5.1932 -0.9720 17 1 -0.5677 -5.2278 0.0205 18 7 -0.4530 -6.3132 -1.8553 19 6 -1.1035 -7.3869 -1.3652 20 8 -1.4125 -7.4263 -0.1902 21 6 -1.4413 -8.5163 -2.2563 22 6 -1.0771 -8.4673 -3.6140 23 6 -1.3810 -9.4895 -4.4534 24 6 -2.0645 -10.6196 -3.9680 25 6 -2.3904 -11.6897 -4.8178 26 6 -3.0526 -12.7698 -4.3196 27 6 -3.4140 -12.8330 -2.9750 28 6 -3.1146 -11.8165 -2.1212 29 6 -2.4311 -10.6841 -2.5997 30 6 -2.1103 -9.6169 -1.7473 31 1 -0.4850 0.8401 0.0004 32 1 -0.3434 -1.7021 -1.2911 33 1 -0.7318 -2.7499 0.1082 34 1 2.9089 -3.7786 0.1107 35 1 1.4131 -4.1174 1.0330 36 1 -0.2061 -6.2819 -2.7928 37 1 -0.5522 -7.6034 -3.9942 38 1 -1.0985 -9.4355 -5.4944 39 1 -2.1165 -11.6558 -5.8620 40 1 -3.3010 -13.5906 -4.9761 41 1 -3.9386 -13.7017 -2.6052 42 1 -3.4011 -11.8786 -1.0818 43 1 -2.3850 -9.6523 -0.7035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962369206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:38 Heat of formation + Delta-G solvation = 53.308099 kcal Electronic energy + Delta-G solvation = -25046.650695 eV Core-core repulsion = 21443.469545 eV Total energy + Delta-G solvation = -3603.181150 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.69038 -40.84190 -39.77414 -37.17017 -36.15945 -34.42593 -33.69798 -32.36502 -31.16246 -30.19713 -28.94961 -27.69645 -25.54117 -24.16789 -23.46361 -22.85365 -22.00323 -21.79173 -20.92168 -19.15024 -18.84303 -18.25915 -17.94818 -17.09360 -16.75683 -16.54819 -16.06300 -15.71502 -15.57103 -15.32473 -14.89488 -14.66717 -14.60163 -14.50234 -14.33989 -14.05528 -13.76206 -13.35554 -13.27795 -12.93077 -12.90050 -12.68526 -12.27699 -12.19696 -12.16155 -12.06786 -11.89258 -11.78946 -11.69272 -11.19032 -10.98895 -10.85411 -10.71243 -9.85623 -9.59241 -8.93859 -8.89178 -7.92277 -5.29494 -0.64622 -0.15789 0.96585 1.46845 1.47561 1.50289 1.57106 1.85266 2.25100 2.48402 2.83119 3.14461 3.27332 3.48812 3.59847 3.63808 3.80186 3.83483 3.90566 3.99843 4.10893 4.11138 4.20184 4.31658 4.35766 4.41915 4.47995 4.51001 4.76454 4.82080 4.86535 4.92973 4.97267 5.09540 5.14636 5.24381 5.25325 5.29850 5.39122 5.42923 5.50172 5.57518 5.59132 5.62890 5.79808 6.02122 6.15382 6.42551 6.99050 7.08611 7.66044 8.44603 9.21525 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.042010 B = 0.002013 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.345257 B =13906.052623 C =14139.626277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.984 3.016 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.084 0.916 9 N -0.616 5.616 10 C 0.188 3.812 11 C -0.176 4.176 12 H 0.130 0.870 13 C -0.163 4.163 14 H 0.138 0.862 15 C 0.148 3.852 16 C 0.113 3.887 17 H 0.105 0.895 18 N -0.676 5.676 19 C 0.558 3.442 20 O -0.581 6.581 21 C -0.145 4.145 22 C -0.098 4.098 23 C -0.102 4.102 24 C -0.050 4.050 25 C -0.116 4.116 26 C -0.108 4.108 27 C -0.119 4.119 28 C -0.114 4.114 29 C -0.081 4.081 30 C -0.047 4.047 31 H 0.250 0.750 32 H 0.061 0.939 33 H -0.005 1.005 34 H 0.065 0.935 35 H 0.017 0.983 36 H 0.417 0.583 37 H 0.150 0.850 38 H 0.166 0.834 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.137 0.863 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.811 -27.604 -14.604 31.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.258 4.258 3 Si 0.811 3.189 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.371 4.371 8 H 0.101 0.899 9 N -0.340 5.340 10 C 0.062 3.938 11 C -0.197 4.197 12 H 0.148 0.852 13 C -0.184 4.184 14 H 0.155 0.845 15 C 0.022 3.978 16 C 0.006 3.994 17 H 0.122 0.878 18 N -0.326 5.326 19 C 0.348 3.652 20 O -0.462 6.462 21 C -0.148 4.148 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.051 4.051 25 C -0.134 4.134 26 C -0.126 4.126 27 C -0.137 4.137 28 C -0.132 4.132 29 C -0.081 4.081 30 C -0.067 4.067 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.012 0.988 34 H 0.083 0.917 35 H 0.035 0.965 36 H 0.256 0.744 37 H 0.167 0.833 38 H 0.183 0.817 39 H 0.174 0.826 40 H 0.171 0.829 41 H 0.166 0.834 42 H 0.155 0.845 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.027 -27.351 -13.752 31.024 hybrid contribution 0.236 1.356 0.308 1.410 sum -4.791 -25.995 -13.445 29.655 Atomic orbital electron populations 1.70099 1.06613 1.25907 1.56995 1.25802 0.96529 1.01465 1.01963 0.85082 0.77143 0.78251 0.78402 1.19978 1.22032 1.20142 1.19367 0.91427 0.83413 1.42875 0.89868 1.45472 1.13741 1.01116 1.73704 1.20805 0.86060 0.93754 0.93169 1.24351 1.03666 0.90887 1.00793 0.85197 1.24282 0.90902 1.01531 1.01681 0.84460 1.21252 0.98085 0.84445 0.93986 1.21404 0.97942 0.85023 0.95042 0.87754 1.45051 1.57738 1.16496 1.13272 1.18714 0.76714 0.82587 0.87222 1.90758 1.55421 1.81152 1.18905 1.19746 1.05157 0.94955 0.94984 1.21093 0.99195 1.00285 0.91037 1.21293 0.97462 0.91913 1.01305 1.18572 0.97693 0.96066 0.92721 1.21411 0.98730 0.92688 1.00554 1.21359 0.96665 0.98744 0.95799 1.21257 0.99454 0.99073 0.93886 1.21341 0.97856 0.92917 1.01105 1.18246 1.00789 0.95385 0.93667 1.21550 0.93795 0.91433 0.99885 0.94056 0.92063 0.98754 0.91653 0.96486 0.74405 0.83277 0.81668 0.82650 0.82938 0.83385 0.84494 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.68 10.86 21.65 0.24 -57.44 16 2 C -0.06 -3.66 5.40 84.86 0.46 -3.20 16 3 Si 0.98 45.60 29.56 68.60 2.03 47.63 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.24 -13.69 10.35 84.04 0.87 -12.82 16 8 H 0.08 4.46 7.84 -2.91 -0.02 4.43 16 9 N -0.62 -32.43 3.38 -688.14 -2.33 -34.76 16 10 C 0.19 9.46 5.70 86.53 0.49 9.95 16 11 C -0.18 -6.55 7.05 -9.89 -0.07 -6.62 16 12 H 0.13 4.17 8.14 -2.38 -0.02 4.15 16 13 C -0.16 -5.61 7.06 -9.89 -0.07 -5.68 16 14 H 0.14 3.86 8.14 -2.39 -0.02 3.84 16 15 C 0.15 6.33 7.04 86.53 0.61 6.94 16 16 C 0.11 3.85 5.98 44.99 0.27 4.12 16 17 H 0.10 4.25 7.40 -2.39 -0.02 4.23 16 18 N -0.68 -18.05 5.51 -445.49 -2.46 -20.50 16 19 C 0.56 16.81 7.76 86.77 0.67 17.48 16 20 O -0.58 -22.65 15.87 -3.91 -0.06 -22.71 16 21 C -0.15 -3.44 5.87 -20.11 -0.12 -3.56 16 22 C -0.10 -1.62 9.44 22.28 0.21 -1.41 16 23 C -0.10 -1.39 9.73 22.29 0.22 -1.18 16 24 C -0.05 -0.81 5.75 -21.25 -0.12 -0.93 16 25 C -0.12 -1.27 9.76 22.33 0.22 -1.06 16 26 C -0.11 -1.03 9.95 22.06 0.22 -0.81 16 27 C -0.12 -1.33 9.95 22.04 0.22 -1.11 16 28 C -0.11 -1.78 9.77 22.36 0.22 -1.56 16 29 C -0.08 -1.57 5.74 -21.31 -0.12 -1.70 16 30 C -0.05 -1.11 9.34 22.83 0.21 -0.90 16 31 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 32 H 0.06 3.43 6.51 -2.39 -0.02 3.41 16 33 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.42 7.95 6.81 -92.70 -0.63 7.32 16 37 H 0.15 1.67 6.34 -2.91 -0.02 1.65 16 38 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.16 0.81 8.06 -2.91 -0.02 0.78 16 40 H 0.15 0.56 8.06 -2.91 -0.02 0.53 16 41 H 0.15 0.90 8.06 -2.91 -0.02 0.87 16 42 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 43 H 0.13 3.22 7.61 -2.91 -0.02 3.20 16 Total: -1.00 -75.85 359.96 2.22 -73.64 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.41 Total: 18.20 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 4.39 Total: -4.05 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -4.55 Total: -112.71 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.06 Total: -22.71 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -75.85 2.22 -73.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962369206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.944 kcal (2) G-P(sol) polarization free energy of solvation -75.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds