Wall clock time and date at job start Tue Mar 31 2020 13:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 120.00200 * 2 1 4 4 H 1.48499 * 109.47263 * 240.00261 * 3 2 1 5 5 H 1.48501 * 109.46700 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47333 * 119.99743 * 3 2 1 7 7 C 1.38815 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00238 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99819 * 359.97438 * 7 2 1 10 10 C 1.48149 * 127.83967 * 179.97438 * 9 7 2 11 11 C 1.54385 * 104.61755 * 140.41382 * 10 9 7 12 12 H 1.08995 * 118.18473 * 244.20195 * 11 10 9 13 13 C 1.54282 * 104.95985 * 23.87021 * 11 10 9 14 14 H 1.09003 * 121.81428 * 222.17448 * 13 11 10 15 15 C 1.51830 * 127.61180 * 0.33605 * 9 7 2 16 16 C 1.53001 * 59.72279 * 114.13807 * 13 11 10 17 17 H 1.09001 * 117.44260 * 252.34916 * 16 13 11 18 18 N 1.46497 * 117.44370 * 107.60289 * 16 13 11 19 19 C 1.34779 * 120.00044 * 154.99823 * 18 16 13 20 20 O 1.21602 * 119.99734 * 0.02562 * 19 18 16 21 21 C 1.47455 * 120.00055 * 180.02562 * 19 18 16 22 22 C 1.38720 * 120.37858 * 354.03039 * 21 19 18 23 23 C 1.38905 * 120.64705 * 179.83791 * 22 21 19 24 24 C 1.36282 * 121.18134 * 0.39175 * 23 22 21 25 25 C 1.40563 * 120.12561 * 359.84249 * 24 23 22 26 26 C 1.40581 * 121.16782 * 179.91436 * 25 24 23 27 27 C 1.36130 * 119.65072 * 180.02562 * 26 25 24 28 28 C 1.39296 * 120.95298 * 0.03869 * 27 26 25 29 29 C 1.36253 * 120.93263 * 359.97438 * 28 27 26 30 30 C 1.40142 * 119.69180 * 0.02562 * 29 28 27 31 31 H 0.97001 * 119.99937 * 0.02562 * 1 2 3 32 32 H 1.09007 * 110.40410 * 21.63245 * 10 9 7 33 33 H 1.09004 * 110.40741 * 259.20240 * 10 9 7 34 34 H 1.08999 * 110.21934 * 101.72375 * 15 9 7 35 35 H 1.08994 * 112.26061 * 338.13810 * 15 9 7 36 36 H 0.96996 * 120.00562 * 335.00407 * 18 16 13 37 37 H 1.07995 * 119.67246 * 359.97438 * 22 21 19 38 38 H 1.08006 * 119.40589 * 180.22872 * 23 22 21 39 39 H 1.07998 * 119.94004 * 179.81773 * 24 23 22 40 40 H 1.07995 * 120.17227 * 0.06979 * 26 25 24 41 41 H 1.08007 * 119.52259 * 180.02562 * 27 26 25 42 42 H 1.08005 * 119.53325 * 179.97438 * 28 27 26 43 43 H 1.08005 * 120.15589 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 1.8844 -3.7601 -0.0016 11 6 0.9659 -4.5556 0.9507 12 1 1.3985 -4.9573 1.8670 13 6 -0.3702 -3.7842 0.9520 14 1 -0.9330 -3.6112 1.8694 15 6 -0.1793 -2.5892 -0.0071 16 6 -0.2954 -5.1964 0.3680 17 1 -0.3537 -5.2955 -0.7159 18 7 -0.9181 -6.2781 1.1350 19 6 -1.3380 -7.3943 0.5070 20 8 -1.1995 -7.5036 -0.6961 21 6 -1.9654 -8.4828 1.2789 22 6 -2.0163 -8.4217 2.6638 23 6 -2.6089 -9.4424 3.3963 24 6 -3.1478 -10.5319 2.7801 25 6 -3.1145 -10.6384 1.3789 26 6 -3.6623 -11.7533 0.7207 27 6 -3.6126 -11.8249 -0.6378 28 6 -3.0254 -10.8085 -1.3878 29 6 -2.4849 -9.7141 -0.7823 30 6 -2.5178 -9.6065 0.6146 31 1 -0.4850 0.8401 -0.0004 32 1 2.9076 -3.7540 0.3743 33 1 1.8498 -4.1838 -1.0053 34 1 -0.5205 -2.8478 -1.0095 35 1 -0.7143 -1.7149 0.3637 36 1 -1.0284 -6.1911 2.0947 37 1 -1.5930 -7.5712 3.1773 38 1 -2.6407 -9.3725 4.4736 39 1 -3.6011 -11.3153 3.3695 40 1 -4.1206 -12.5485 1.2898 41 1 -4.0345 -12.6822 -1.1414 42 1 -2.9983 -10.8891 -2.4645 43 1 -2.0323 -8.9337 -1.3761 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962447773.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:03 Heat of formation + Delta-G solvation = 67.254468 kcal Electronic energy + Delta-G solvation = -25510.177114 eV Core-core repulsion = 21907.600723 eV Total energy + Delta-G solvation = -3602.576390 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84923 -40.66069 -39.49777 -37.40513 -36.04573 -34.43377 -33.58740 -32.11465 -31.23140 -30.14909 -28.83945 -27.64181 -25.40676 -24.09293 -23.77731 -23.07227 -22.02515 -21.53318 -20.81954 -18.93224 -18.71752 -18.41105 -17.72337 -17.31414 -16.71630 -16.67113 -16.12376 -16.01344 -15.53719 -15.23212 -14.97808 -14.61781 -14.41388 -14.36262 -14.21159 -13.77412 -13.69618 -13.26158 -13.08200 -13.01999 -12.93875 -12.69991 -12.38970 -12.28828 -12.13988 -12.01662 -11.90286 -11.74522 -11.66849 -10.98812 -10.92004 -10.73171 -10.61431 -9.79988 -9.61397 -8.97723 -8.87186 -7.76301 -5.23860 -0.73823 0.04479 0.78838 1.48113 1.51452 1.57802 1.71129 1.85411 2.18302 2.49589 2.84394 3.18144 3.32063 3.46974 3.57252 3.75015 3.83475 3.86137 3.89587 3.99174 4.12457 4.14790 4.27110 4.34706 4.39179 4.42612 4.51975 4.58965 4.67160 4.84625 4.89103 4.95899 4.96805 5.14592 5.20079 5.25962 5.29646 5.36226 5.41311 5.44673 5.49670 5.61305 5.67764 5.76442 5.85358 6.06832 6.24823 6.42612 7.01525 7.11822 7.68637 8.43530 9.25161 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.030882 B = 0.002305 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.446131 B =12144.606045 C =12592.651289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.070 4.070 3 Si 0.985 3.015 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.232 4.232 8 H 0.085 0.915 9 N -0.624 5.624 10 C 0.153 3.847 11 C -0.168 4.168 12 H 0.133 0.867 13 C -0.172 4.172 14 H 0.122 0.878 15 C 0.153 3.847 16 C 0.114 3.886 17 H 0.108 0.892 18 N -0.677 5.677 19 C 0.559 3.441 20 O -0.570 6.570 21 C -0.156 4.156 22 C -0.059 4.059 23 C -0.133 4.133 24 C -0.065 4.065 25 C -0.082 4.082 26 C -0.104 4.104 27 C -0.125 4.125 28 C -0.119 4.119 29 C -0.153 4.153 30 C -0.034 4.034 31 H 0.249 0.751 32 H 0.063 0.937 33 H 0.022 0.978 34 H -0.004 1.004 35 H 0.110 0.890 36 H 0.415 0.585 37 H 0.151 0.849 38 H 0.167 0.833 39 H 0.168 0.832 40 H 0.163 0.837 41 H 0.152 0.848 42 H 0.133 0.867 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.804 -25.915 9.356 28.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.813 3.187 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.361 4.361 8 H 0.102 0.898 9 N -0.349 5.349 10 C 0.027 3.973 11 C -0.189 4.189 12 H 0.151 0.849 13 C -0.192 4.192 14 H 0.139 0.861 15 C 0.029 3.971 16 C 0.007 3.993 17 H 0.125 0.875 18 N -0.326 5.326 19 C 0.350 3.650 20 O -0.452 6.452 21 C -0.159 4.159 22 C -0.078 4.078 23 C -0.151 4.151 24 C -0.083 4.083 25 C -0.082 4.082 26 C -0.121 4.121 27 C -0.142 4.142 28 C -0.137 4.137 29 C -0.170 4.170 30 C -0.035 4.035 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.014 0.986 35 H 0.127 0.873 36 H 0.254 0.746 37 H 0.168 0.832 38 H 0.184 0.816 39 H 0.185 0.815 40 H 0.181 0.819 41 H 0.169 0.831 42 H 0.151 0.849 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.683 -25.704 8.515 28.436 hybrid contribution 0.479 1.356 -0.221 1.455 sum -8.204 -24.348 8.294 26.999 Atomic orbital electron populations 1.69732 1.06248 1.25140 1.58819 1.25622 0.96633 1.00947 1.03007 0.85047 0.77029 0.78469 0.78135 1.20686 1.21928 1.20114 1.19459 0.90971 0.83353 1.42280 0.89761 1.46414 1.02071 1.00465 1.85954 1.21208 0.96035 0.84406 0.95632 1.24315 0.90146 1.01929 1.02553 0.84924 1.24329 1.01366 0.90889 1.02664 0.86050 1.22316 0.84895 0.96273 0.93616 1.21472 0.97076 0.85252 0.95524 0.87458 1.45103 1.60028 1.15749 1.11757 1.18578 0.77283 0.82177 0.86963 1.90566 1.58021 1.80342 1.16257 1.19794 1.05787 0.95477 0.94811 1.21742 0.95095 0.99511 0.91445 1.21184 0.98462 0.93330 1.02095 1.21696 0.95747 0.98586 0.92287 1.18437 1.00053 0.94941 0.94746 1.21437 0.98594 0.97055 0.95037 1.21257 0.99108 0.99232 0.94642 1.21298 0.97300 0.93845 1.01208 1.22128 0.99907 1.00130 0.94844 1.18112 0.97755 0.93723 0.93918 0.94101 0.91875 0.96066 0.98590 0.87287 0.74619 0.83161 0.81568 0.81472 0.81917 0.83061 0.84880 0.84206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.39 10.12 21.65 0.22 -56.17 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.99 45.60 29.55 68.60 2.03 47.63 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.23 -13.07 10.42 84.03 0.88 -12.20 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 9 N -0.62 -32.77 3.46 -678.10 -2.35 -35.12 16 10 C 0.15 6.52 7.05 86.53 0.61 7.13 16 11 C -0.17 -5.92 7.06 -9.89 -0.07 -5.99 16 12 H 0.13 3.91 8.14 -2.39 -0.02 3.89 16 13 C -0.17 -6.56 6.96 -9.88 -0.07 -6.63 16 14 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 15 C 0.15 7.69 6.43 85.80 0.55 8.25 16 16 C 0.11 3.91 5.97 44.99 0.27 4.17 16 17 H 0.11 4.31 7.40 -2.39 -0.02 4.29 16 18 N -0.68 -18.43 5.51 -445.77 -2.46 -20.88 16 19 C 0.56 17.15 7.72 86.67 0.67 17.82 16 20 O -0.57 -21.82 12.95 -4.04 -0.05 -21.87 16 21 C -0.16 -3.87 5.90 -19.87 -0.12 -3.99 16 22 C -0.06 -0.97 9.51 22.55 0.21 -0.76 16 23 C -0.13 -1.56 9.92 21.97 0.22 -1.34 16 24 C -0.07 -0.80 9.75 22.38 0.22 -0.58 16 25 C -0.08 -1.53 5.74 -21.31 -0.12 -1.65 16 26 C -0.10 -1.51 9.77 22.35 0.22 -1.29 16 27 C -0.12 -1.99 9.95 22.03 0.22 -1.77 16 28 C -0.12 -2.56 9.95 22.06 0.22 -2.34 16 29 C -0.15 -4.29 9.21 22.27 0.21 -4.08 16 30 C -0.03 -0.88 5.76 -21.12 -0.12 -1.00 16 31 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 33 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 35 H 0.11 6.14 5.34 -2.39 -0.01 6.13 16 36 H 0.42 8.25 6.89 -92.71 -0.64 7.61 16 37 H 0.15 1.66 6.42 -2.91 -0.02 1.64 16 38 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 40 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 41 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 42 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 43 H 0.14 4.72 4.87 -4.67 -0.02 4.70 16 Total: -1.00 -74.71 353.56 2.25 -72.46 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.40 Total: 23.71 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 4.45 Total: -9.76 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -4.59 Total: -112.17 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.05 Total: -21.87 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -74.71 2.25 -72.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962447773.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.717 kcal (2) G-P(sol) polarization free energy of solvation -74.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds